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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GH5 | 0001 | 2023-02-26 | 2018-05-04 | 3.4 | 3.71 | — | 3.4 | 0.033 | 3.30 | 333.0 | 0.22 | 17.29 | 0.02 | 1.847 | 24.49 | 4.29 | 11.0 | 86.7 | 2.3 | -4.34 | 0.89 | 0.88 | 2.50 | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 18.31 | 0.00 | 2.125 | 14.20 | 0.54 | 9.6 | 89.4 | 1.0 | -1.08 | 1.34 | 0.88 | 0.87 | 1.93 | 28316 | 3593 | 8 | 92 | 50 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2023-02-26 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 15.53 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.005 | 0.80 | 0.0 | 0.04 | 15.90 | 0.00 | 1.973 | 12.19 | 0.08 | 9.6 | 89.8 | 0.6 | -0.99 | 1.41 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✔ | 6GiY | 0008 | 2023-02-26 | 2018-05-15 | 4.3 | 4.14 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 10.19 | 0.01 | 2.232 | 6.17 | 0.29 | 12.7 | 87.1 | 0.3 | -5.09 | 0.73 | 0.77 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 12.12 | 0.01 | 2.107 | 11.70 | 0.00 | 10.4 | 89.5 | 0.1 | -2.19 | 0.92 | 0.73 | 0.76 | — | 28969 | 3649 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-02-20 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.88 | 0.0 | 0.05 | 12.54 | 0.01 | 2.080 | 22.51 | 0.00 | 16.1 | 83.8 | 0.1 | -3.64 | 1.21 | 0.85 | 0.77 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ3 | 0010 | 2023-02-22 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 12.36 | 0.01 | 2.209 | 10.26 | 0.00 | 10.8 | 89.2 | 0.0 | -1.74 | 0.76 | 0.71 | 0.78 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJZ | 0012 | 2023-02-19 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 10.30 | 0.01 | 2.008 | 13.98 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 11.94 | 0.00 | 2.003 | 28.55 | 0.00 | 10.8 | 89.2 | 0.0 | -0.73 | 1.52 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GKH | 0023 | 2023-02-19 | 2018-05-21 | 4.06 | 4.18 | 3.92 | 4.1 | 0.006 | 1.49 | 0.0 | 0.05 | 9.62 | 0.00 | 1.641 | 13.64 | 0.00 | 10.0 | 90.0 | 0.0 | -4.26 | 0.61 | 0.79 | — | 4.1 | 0.004 | 1.06 | 0.0 | 0.04 | 12.18 | 0.00 | 1.774 | 25.31 | 0.16 | 10.2 | 89.8 | 0.0 | -1.11 | 1.88 | 0.61 | 0.81 | — | 10587 | 685 | 4 | 30 | 4 | 0 | 4399 | logfile |
✔ | 6GKM | 0024 | 2023-02-19 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 10.31 | 0.00 | 2.134 | 11.37 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.002 | 0.71 | 0.0 | 0.04 | 13.76 | 0.00 | 2.109 | 20.52 | 0.16 | 7.9 | 92.1 | 0.0 | -0.09 | 1.48 | 0.62 | 0.82 | 2.34 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GNi | 0044 | 2023-02-20 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.32 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.69 | 0.01 | 1.878 | 12.42 | 0.00 | 2.9 | 96.9 | 0.2 | 0.82 | 1.64 | 0.48 | 0.73 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6GSA | 0051 | 2023-02-22 | 2018-06-13 | 4.2 | 5.94 | — | 5.0 | 0.011 | 1.24 | 4.0 | 0.09 | 12.00 | 0.01 | 2.189 | 4.69 | 1.75 | 5.1 | 94.7 | 0.2 | -2.92 | 0.67 | 0.44 | — | 5.0 | 0.003 | 0.73 | 0.0 | 0.04 | 12.56 | 0.00 | 2.145 | 18.82 | 0.00 | 5.2 | 94.8 | 0.0 | -0.02 | 1.21 | 0.83 | 0.74 | — | 16272 | 1999 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GTC | 0061 | 2023-02-20 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 15.72 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 18.32 | 0.00 | 2.033 | 13.75 | 0.17 | 7.9 | 92.1 | 0.0 | -2.79 | 1.14 | 0.71 | 0.69 | 1.56 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |
✔ | 6GTD | 0062 | 2023-02-17 | 2018-06-18 | 4.24 | 4.28 | — | 3.9 | 0.009 | 1.26 | 0.0 | 0.08 | 21.74 | 0.01 | 2.138 | 13.01 | 0.00 | 19.8 | 80.2 | 0.0 | -5.72 | 0.78 | 0.65 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 20.33 | 0.00 | 2.025 | 16.75 | 0.00 | 19.3 | 80.7 | 0.0 | -3.20 | 0.98 | 0.79 | 0.67 | — | 6456 | 1269 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTE | 0063 | 2023-02-19 | 2018-06-18 | 4.07 | 3.99 | — | 3.9 | 0.009 | 1.11 | 0.0 | 0.06 | 16.15 | 0.01 | 2.232 | 8.08 | 0.75 | 15.6 | 84.3 | 0.1 | -5.76 | 0.73 | 0.71 | — | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 16.52 | 0.00 | 2.110 | 14.73 | 0.00 | 9.3 | 90.7 | 0.0 | -2.98 | 0.84 | 0.73 | 0.70 | — | 10872 | 1274 | 4 | 67 | 0 | 0 | 0 | logfile |
✔ | 6GTF | 0064 | 2023-02-19 | 2018-06-18 | 3.63 | 3.94 | — | 3.8 | 0.010 | 1.17 | 0.0 | 0.07 | 16.19 | 0.01 | 2.030 | 10.45 | 0.43 | 15.5 | 84.5 | 0.0 | -5.84 | 0.72 | 0.64 | 1.89 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 17.95 | 0.00 | 2.170 | 14.44 | 0.43 | 7.1 | 92.9 | 0.0 | -3.13 | 1.43 | 0.74 | 0.64 | 1.97 | 10871 | 1280 | 4 | 66 | 0 | 0 | 0 | logfile |
✔ | 6GTG | 0065 | 2023-02-20 | 2018-06-18 | 3.27 | 3.35 | — | 3.3 | 0.009 | 1.07 | 0.0 | 0.06 | 14.80 | 0.01 | 2.051 | 6.61 | 0.69 | 14.5 | 85.5 | 0.0 | -5.96 | 0.68 | 0.75 | 2.90 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 16.96 | 0.00 | 2.037 | 14.30 | 0.17 | 10.4 | 89.6 | 0.0 | -3.36 | 1.14 | 0.69 | 0.76 | 2.10 | 12538 | 1298 | 8 | 91 | 4 | 3 | 0 | logfile |
✔ | 6GX5 | 0077 | 2023-02-16 | 2018-06-26 | 3.2 | 2.51 | 2.94 | 3.2 | 0.017 | 1.20 | 0.0 | 0.11 | 16.09 | 0.01 | 2.596 | 5.96 | 4.94 | 4.3 | 95.7 | 0.0 | -3.50 | 0.85 | 0.88 | 5.60 | 3.2 | 0.004 | 0.76 | 0.0 | 0.05 | 17.31 | 0.00 | 2.207 | 9.16 | 1.65 | 5.8 | 94.2 | 0.0 | -2.81 | 0.66 | 0.82 | 0.85 | 4.84 | 2133 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYB | 0089 | 2023-02-23 | 2018-06-28 | 3.28 | 3.42 | — | 3.4 | 0.008 | 0.92 | 0.0 | 0.06 | 9.51 | 0.01 | 2.304 | 4.03 | 0.22 | 6.6 | 93.4 | 0.0 | -4.49 | 0.81 | 0.87 | 4.60 | 3.4 | 0.005 | 0.65 | 0.0 | 0.05 | 14.20 | 0.00 | 2.142 | 7.18 | 0.40 | 6.3 | 93.7 | 0.0 | -1.08 | 0.55 | 0.81 | 0.89 | 3.74 | 59318 | 7546 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYN | 0093 | 2023-02-22 | 2018-06-30 | 3.4 | 3.66 | 3.52 | 3.6 | 0.008 | 0.85 | 0.0 | 0.05 | 9.32 | 0.01 | 2.273 | 3.08 | 0.00 | 4.7 | 95.3 | 0.0 | -2.56 | 0.66 | 0.83 | 3.51 | 3.6 | 0.002 | 0.53 | 0.0 | 0.04 | 13.13 | 0.00 | 2.273 | 7.35 | 0.17 | 2.5 | 97.5 | 0.0 | 2.44 | 0.48 | 0.65 | 0.83 | 1.93 | 16932 | 1980 | 8 | 0 | 36 | 0 | 0 | logfile |
✔ | 6GYP | 0095 | 2023-02-22 | 2018-07-01 | 3.6 | 3.70 | — | 3.7 | 0.006 | 0.95 | 0.0 | 0.05 | 10.75 | 0.01 | 2.259 | 4.86 | 0.50 | 7.1 | 92.8 | 0.1 | -4.51 | 0.57 | 0.68 | 2.48 | 3.7 | 0.004 | 0.71 | 0.0 | 0.04 | 15.05 | 0.00 | 2.161 | 11.83 | 0.45 | 6.0 | 93.9 | 0.0 | -0.60 | 0.79 | 0.74 | 0.82 | 1.53 | 17811 | 2148 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GYU | 0097 | 2023-02-22 | 2018-07-02 | 3.0 | 3.35 | — | 3.3 | 0.005 | 0.94 | 0.0 | 0.05 | 10.80 | 0.01 | 1.349 | 6.02 | 0.74 | 6.4 | 93.4 | 0.3 | -4.30 | 0.70 | 0.73 | 3.36 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 15.36 | 0.00 | 2.139 | 11.10 | 2.06 | 5.9 | 94.1 | 0.0 | 0.03 | 1.71 | 0.79 | 0.84 | 2.51 | 18159 | 2193 | 6 | 0 | 2 | 0 | 0 | logfile |