Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GH5	0001	2023-08-19	2018-05-04	3.4	3.71	—	3.4	0.033	3.30	333.0	0.22	17.29	0.02	1.847	24.49	4.29	11.0	86.7	2.3	-4.34	0.89	0.88	2.50	3.4	0.005	0.84	0.0	0.04	18.31	0.00	2.135	13.17	0.66	9.5	89.5	1.0	-0.99	1.34	0.88	0.86	1.77	28316	3593	8	92	50	0	0	logfile
✔	6GH6	0002	2023-08-19	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	15.53	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.005	0.81	0.0	0.04	15.96	0.00	1.965	12.53	0.11	9.9	89.5	0.6	-1.09	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✘	6GiQ	0004	2023-08-26	2018-05-15	3.23	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44120	5439	42	0	57	0	0	logfile
✔	6GiY	0008	2023-08-20	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.19	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.76	0.0	0.04	11.91	0.01	2.098	11.61	0.10	10.0	89.9	0.1	-2.01	0.93	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6GJ1	0009	2023-08-12	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.57	0.01	2.086	22.39	0.00	16.4	83.4	0.1	-3.83	1.16	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6GJ3	0010	2023-08-15	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.73	0.0	0.04	12.36	0.01	2.209	10.28	0.00	10.8	89.2	0.0	-1.74	0.76	0.71	0.78	—	17405	2194	7	0	0	0	0	logfile
✔	6GJC	0011	2023-08-16	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.47	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.003	0.69	0.0	0.04	13.17	0.00	2.106	10.45	0.30	6.0	94.0	0.0	-0.63	0.66	0.87	0.86	1.70	124992	16620	12	0	6	0	0	logfile
✔	6GJZ	0012	2023-08-11	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	10.30	0.01	2.008	13.98	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.003	0.75	0.0	0.04	11.94	0.00	2.003	28.55	0.00	10.8	89.2	0.0	-0.73	1.52	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6GKH	0023	2023-08-11	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	9.62	0.00	1.641	13.64	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.004	1.06	0.0	0.04	12.18	0.00	1.774	25.31	0.16	10.2	89.8	0.0	-1.11	1.88	0.61	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6GKM	0024	2023-08-11	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.37	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.002	0.71	0.0	0.04	13.76	0.00	2.109	20.52	0.16	7.9	92.1	0.0	-0.09	1.48	0.62	0.82	2.34	10562	689	4	28	2	0	4402	logfile
✔	6GMH	0031	2023-08-27	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.73	0.01	1.921	5.48	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.003	0.66	0.0	0.04	14.76	0.00	2.066	11.03	0.24	5.2	94.7	0.0	0.11	0.71	0.83	0.83	2.29	50239	6397	30	106	525	0	0	logfile
✔	6GoV	0043	2023-08-23	2018-06-04	3.7	4.02	3.65	3.9	0.008	0.93	0.0	0.06	12.68	0.01	1.963	5.69	0.25	7.7	92.2	0.1	-3.76	0.79	0.79	1.97	3.9	0.002	0.60	0.0	0.04	14.81	0.00	2.098	8.94	0.11	4.6	95.4	0.0	-0.10	1.50	0.82	0.80	1.21	35040	4157	14	117	3	0	0	logfile
✔	6GSA	0051	2023-08-14	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.69	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.73	0.0	0.04	12.56	0.00	2.145	18.82	0.00	5.2	94.8	0.0	-0.02	1.21	0.83	0.74	—	16272	1999	5	0	0	0	0	logfile
✔	6GTC	0061	2023-08-12	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.69	0.0	0.04	18.32	0.00	2.033	13.75	0.17	7.9	92.1	0.0	-2.79	1.14	0.71	0.69	1.56	11931	1280	4	65	0	0	0	logfile
✔	6GTD	0062	2023-08-09	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.8	0.008	0.99	0.0	0.07	20.73	0.00	1.909	27.42	0.00	22.2	77.8	0.0	-3.42	0.97	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6GTE	0063	2023-08-12	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	16.15	0.01	2.232	8.08	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.003	0.65	0.0	0.04	16.34	0.00	2.190	13.00	0.00	7.8	92.2	0.0	-2.93	0.83	0.73	0.69	—	10872	1274	4	67	0	0	0	logfile
✔	6GTF	0064	2023-08-12	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	16.19	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.70	0.0	0.04	17.95	0.00	2.170	14.44	0.43	7.1	92.9	0.0	-3.13	1.43	0.74	0.64	1.97	10871	1280	4	66	0	0	0	logfile
✔	6GTG	0065	2023-08-12	2018-06-18	3.27	3.35	—	3.3	0.009	1.07	0.0	0.06	14.80	0.01	2.051	6.65	0.69	14.5	85.5	0.0	-5.96	0.68	0.75	2.90	3.3	0.003	0.64	0.0	0.04	16.96	0.00	2.037	14.30	0.17	10.4	89.6	0.0	-3.36	1.14	0.69	0.76	2.10	12538	1298	8	91	4	3	0	logfile
✔	6GVE	0071	2023-08-22	2018-06-20	3.9	4.13	3.97	4.0	0.010	0.99	0.0	0.06	10.07	0.01	2.133	7.04	0.11	4.2	95.8	0.0	-3.72	0.77	0.75	1.99	4.0	0.003	0.73	0.0	0.05	14.69	0.00	2.116	15.28	0.56	4.3	95.7	0.0	-0.71	1.32	0.81	0.83	1.55	33412	4272	24	0	8	0	0	logfile
✔	6GX5	0077	2023-08-09	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.76	0.0	0.05	17.31	0.00	2.207	9.16	1.65	5.8	94.2	0.0	-2.81	0.66	0.82	0.85	4.84	2133	282	3	0	0	0	0	logfile

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