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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GH5 | 0001 | 2022-04-07 | 2018-05-04 | 3.4 | 3.71 | — | 3.4 | 0.033 | 3.30 | 333.0 | 0.22 | 17.29 | 0.02 | 1.847 | 24.53 | 4.29 | 11.0 | 86.7 | 2.3 | -4.34 | 0.89 | 0.88 | 2.50 | 3.4 | 0.004 | 0.82 | 0.0 | 0.04 | 18.22 | 0.00 | 2.153 | 12.33 | 0.35 | 9.0 | 90.0 | 1.0 | -0.92 | 1.34 | 0.88 | 0.86 | 1.70 | 28316 | 3593 | 8 | 92 | 50 | 0 | 0 | logfile |
✔ | 6GH6 | 0002 | 2022-04-07 | 2018-05-04 | 4.1 | 4.20 | — | 3.9 | 0.004 | 0.91 | 0.0 | 0.05 | 14.40 | 0.00 | 1.934 | 16.36 | 0.38 | 9.7 | 89.3 | 0.9 | -3.61 | 0.85 | 0.74 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 16.02 | 0.00 | 1.988 | 11.92 | 0.08 | 9.3 | 90.0 | 0.6 | -0.97 | 1.78 | 0.87 | 0.81 | — | 28051 | 3482 | 8 | 96 | 51 | 0 | 0 | logfile |
✘ | 6GiQ | 0004 | 2022-04-09 | 2018-05-15 | 3.23 | 3.67 | 3.34 | 3.6 | 0.010 | 1.26 | 2.0 | 0.07 | 12.12 | 0.01 | 1.203 | 5.88 | 0.45 | 5.9 | 93.9 | 0.2 | -3.41 | 0.74 | 0.82 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✔ | 6GiY | 0008 | 2022-04-07 | 2018-05-15 | 4.3 | 4.14 | — | 4.0 | 0.007 | 1.18 | 0.0 | 0.06 | 10.19 | 0.01 | 2.232 | 6.17 | 0.29 | 12.7 | 87.1 | 0.3 | -5.09 | 0.73 | 0.77 | — | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 12.04 | 0.01 | 2.100 | 13.03 | 0.03 | 10.8 | 89.2 | 0.1 | -2.20 | 0.91 | 0.73 | 0.76 | — | 28969 | 3649 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2022-04-05 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.86 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.05 | 12.43 | 0.01 | 2.086 | 22.66 | 0.00 | 17.1 | 82.8 | 0.1 | -3.73 | 1.19 | 0.85 | 0.76 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ3 | 0010 | 2022-04-06 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 12.07 | 0.01 | 2.261 | 8.68 | 0.00 | 9.6 | 90.4 | 0.0 | -1.53 | 0.76 | 0.71 | 0.77 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJC | 0011 | 2022-04-06 | 2018-05-16 | 3.3 | 3.78 | 3.65 | 3.6 | 0.008 | 1.07 | 6.0 | 0.06 | 10.27 | 0.01 | 2.247 | 5.45 | 1.03 | 7.5 | 92.5 | 0.0 | -4.03 | 0.86 | 0.84 | 2.14 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 13.15 | 0.00 | 2.071 | 10.47 | 0.30 | 6.0 | 94.0 | 0.0 | -0.58 | 0.66 | 0.87 | 0.86 | 1.71 | 124992 | 16620 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6GJZ | 0012 | 2022-04-05 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 10.30 | 0.01 | 2.008 | 13.98 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 11.90 | 0.00 | 2.023 | 28.55 | 0.00 | 11.3 | 88.7 | 0.0 | -0.73 | 1.51 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GKH | 0023 | 2022-04-05 | 2018-05-21 | 4.06 | 4.18 | 3.92 | 4.1 | 0.006 | 1.49 | 0.0 | 0.05 | 9.62 | 0.00 | 1.641 | 13.64 | 0.00 | 10.0 | 90.0 | 0.0 | -4.26 | 0.61 | 0.79 | — | 4.1 | 0.004 | 1.07 | 0.0 | 0.04 | 11.94 | 0.00 | 1.776 | 24.57 | 0.00 | 9.4 | 90.6 | 0.0 | -1.10 | 1.53 | 0.61 | 0.81 | — | 10587 | 685 | 4 | 30 | 4 | 0 | 4399 | logfile |
✔ | 6GKM | 0024 | 2022-04-05 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 10.31 | 0.00 | 2.134 | 11.37 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.77 | 0.00 | 2.101 | 21.43 | 0.16 | 8.8 | 91.2 | 0.0 | -0.36 | 1.48 | 0.62 | 0.82 | 2.37 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 6GMH | 0031 | 2022-04-09 | 2018-05-26 | 3.1 | 3.78 | 3.06 | 3.2 | 0.006 | 0.97 | 0.0 | 0.06 | 12.77 | 0.01 | 1.921 | 5.43 | 0.53 | 4.8 | 95.1 | 0.1 | -2.86 | 0.83 | 0.81 | 2.87 | 3.3 | 0.013 | 0.93 | 2.0 | 0.05 | 14.86 | 0.00 | 2.002 | 12.62 | 0.29 | 5.1 | 94.9 | 0.0 | -0.15 | 0.69 | 0.84 | 0.84 | 2.27 | 50239 | 6397 | 30 | 106 | 525 | 0 | 0 | logfile |
✔ | 6GML | 0038 | 2022-04-09 | 2018-05-27 | 3.2 | 3.74 | 3.37 | 3.5 | 0.007 | 0.97 | 1.0 | 0.06 | 13.29 | 0.01 | 2.054 | 7.09 | 0.43 | 5.9 | 94.1 | 0.0 | -3.52 | 0.73 | 0.68 | 1.81 | 3.5 | 0.005 | 0.81 | 0.0 | 0.04 | 15.70 | 0.00 | 1.522 | 14.79 | 0.14 | 5.6 | 94.4 | 0.0 | 0.01 | 1.47 | 0.80 | 0.82 | 1.92 | 44827 | 5576 | 28 | 98 | 111 | 0 | 0 | logfile |
✔ | 6GoV | 0043 | 2022-04-08 | 2018-06-04 | 3.7 | 4.02 | 3.65 | 3.9 | 0.008 | 0.93 | 0.0 | 0.06 | 12.68 | 0.01 | 1.963 | 5.69 | 0.25 | 7.7 | 92.2 | 0.1 | -3.76 | 0.79 | 0.79 | 1.97 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 14.87 | 0.00 | 2.077 | 9.17 | 0.08 | 4.9 | 95.1 | 0.0 | -0.14 | 1.50 | 0.82 | 0.80 | 1.22 | 35040 | 4157 | 14 | 117 | 3 | 0 | 0 | logfile |
✔ | 6GNi | 0044 | 2022-04-05 | 2018-05-30 | 4.9 | 4.56 | 4.23 | 4.2 | 0.008 | 1.48 | 0.0 | 0.10 | 15.17 | 0.01 | 1.943 | 21.32 | 3.68 | 6.3 | 91.3 | 2.4 | -3.39 | 0.44 | 0.63 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 13.71 | 0.01 | 1.875 | 13.28 | 0.07 | 2.9 | 97.0 | 0.2 | 0.79 | 1.66 | 0.48 | 0.73 | — | 12937 | 1632 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 6GQ1 | 0047 | 2022-04-18 | 2018-06-07 | 4.4 | 4.37 | — | 4.3 | 0.007 | 1.13 | 0.0 | 0.06 | 17.14 | 0.01 | 2.151 | 8.67 | 1.11 | 16.1 | 83.4 | 0.5 | -5.54 | 0.84 | 0.78 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.04 | 17.11 | 0.01 | 1.425 | 21.98 | 0.06 | 16.6 | 83.1 | 0.3 | -4.33 | 1.19 | 0.85 | 0.79 | — | 210540 | 12168 | 92 | 5362 | 10 | 0 | 0 | logfile |
✔ | 6GQB | 0048 | 2022-04-18 | 2018-06-07 | 3.9 | 3.98 | — | 3.9 | 0.008 | 1.20 | 1.0 | 0.06 | 17.18 | 0.01 | 2.146 | 8.36 | 1.22 | 16.6 | 83.0 | 0.5 | -5.75 | 0.81 | 0.75 | 1.46 | 3.9 | 0.007 | 0.87 | 4.0 | 0.04 | 17.66 | 0.01 | 1.060 | 19.25 | 0.57 | 15.5 | 84.2 | 0.3 | -4.46 | 0.46 | 0.82 | 0.78 | 0.93 | 212143 | 12373 | 93 | 5362 | 10 | 0 | 0 | logfile |
✔ | 6GQV | 0049 | 2022-04-18 | 2018-06-08 | 4.0 | 4.12 | — | 4.0 | 0.006 | 1.18 | 3.0 | 0.06 | 17.74 | 0.01 | 2.127 | 8.03 | 1.11 | 15.9 | 83.5 | 0.6 | -5.63 | 0.83 | 0.77 | — | 4.0 | 0.008 | 0.88 | 2.0 | 0.04 | 17.95 | 0.01 | 1.537 | 20.39 | 0.34 | 15.5 | 84.3 | 0.3 | -4.02 | 0.48 | 0.84 | 0.78 | — | 212058 | 12368 | 93 | 5361 | 9 | 0 | 0 | logfile |
✔ | 6GSA | 0051 | 2022-04-05 | 2018-06-13 | 4.2 | 5.94 | — | 5.0 | 0.011 | 1.24 | 4.0 | 0.09 | 12.00 | 0.01 | 2.189 | 4.69 | 1.75 | 5.1 | 94.7 | 0.2 | -2.92 | 0.67 | 0.44 | — | 5.0 | 0.003 | 0.71 | 0.0 | 0.04 | 12.35 | 0.00 | 2.145 | 16.90 | 0.00 | 4.7 | 95.3 | 0.0 | 0.04 | 1.16 | 0.83 | 0.73 | — | 16272 | 1999 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2022-04-13 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.24 | 0.00 | 1.876 | 10.49 | 0.20 | 8.3 | 91.7 | 0.1 | -2.25 | 0.96 | 0.57 | 0.83 | 2.69 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 6GTC | 0061 | 2022-04-05 | 2018-06-18 | 3.91 | 3.85 | — | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 15.72 | 0.01 | 2.275 | 5.90 | 0.86 | 8.8 | 91.2 | 0.0 | -5.69 | 0.70 | 0.67 | 1.97 | 3.8 | 0.010 | 1.15 | 1.0 | 0.04 | 18.50 | 0.01 | 2.064 | 16.03 | 0.09 | 7.5 | 92.5 | 0.0 | -2.93 | 1.13 | 0.71 | 0.69 | 1.72 | 11931 | 1280 | 4 | 65 | 0 | 0 | 0 | logfile |