Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HD5	0201	2023-07-05	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6HD7	0202	2023-07-16	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.96	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.78	0.0	0.04	17.87	0.00	2.034	18.45	0.79	7.7	91.9	0.4	-1.42	1.57	0.76	0.88	1.83	141153	7514	52	3767	234	0	0	logfile
✔	6HDD	0204	2023-07-13	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	6HE4	0209	2023-07-06	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	18.70	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.03	0.0	0.05	14.57	0.01	1.807	30.94	0.00	8.2	91.1	0.7	-1.51	2.38	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	6HE5	0210	2023-07-11	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.88	0.0	0.05	14.49	0.00	2.074	22.24	0.00	4.4	95.4	0.2	-0.85	1.76	0.58	0.76	—	24633	3162	20	0	0	0	0	logfile
✘	6HiN	0225	2023-07-07	2018-08-30	4.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	20	0	30	0	0	logfile
✘	6Hio	0226	2023-07-08	2018-08-30	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16085	1925	20	0	30	0	0	logfile
✘	6HiQ	0227	2023-07-08	2018-08-30	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16110	1925	20	0	30	0	0	logfile
✔	6HiS	0228	2023-07-08	2018-08-30	4.5	4.60	—	4.5	0.011	1.57	0.0	0.08	11.99	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.78	0.0	0.05	13.29	0.00	1.962	14.29	0.00	7.8	92.2	0.0	-1.75	0.92	0.76	0.77	—	16240	1935	25	0	40	0	0	logfile
✔	6HiZ	0233	2023-07-13	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.08	0.01	1.866	11.16	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	3.1	0.002	0.58	0.0	0.04	16.93	0.00	1.989	8.25	0.16	3.3	96.7	0.0	1.26	0.78	0.87	0.89	2.62	76845	9056	33	143	19	3	0	logfile
✔	6HJN	0234	2023-07-06	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	12.09	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.68	0.0	0.04	14.00	0.00	2.096	6.24	0.16	8.3	91.7	0.0	-0.32	0.55	0.89	0.89	3.27	12309	1488	24	0	48	0	0	logfile
✔	6HJP	0235	2023-07-10	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.17	9.0	0.09	11.65	0.02	2.158	3.91	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.64	0.0	0.04	13.89	0.00	2.067	6.05	0.34	4.8	95.2	0.0	0.10	0.63	0.87	0.89	2.88	22134	2784	30	0	51	0	0	logfile
✔	6HJQ	0236	2023-07-10	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	10.07	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.68	0.0	0.04	11.52	0.00	2.000	9.92	0.00	5.4	94.6	0.0	-0.55	1.66	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	6HJR	0237	2023-07-06	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	11.24	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.002	0.65	0.0	0.04	12.00	0.00	2.090	9.54	0.00	7.3	92.5	0.1	-0.81	0.60	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile
✔	6HKo	0238	2023-07-16	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.98	0.01	1.761	5.34	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.003	0.65	0.0	0.04	16.11	0.00	1.931	11.64	0.52	4.3	95.7	0.0	-0.85	1.29	0.74	0.86	2.78	34518	4154	23	73	8	0	0	logfile
✔	6HLQ	0239	2023-07-15	2018-09-11	3.18	3.18	—	3.2	0.006	0.90	0.0	0.06	12.11	0.01	1.742	5.18	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.2	0.002	0.59	0.0	0.04	16.51	0.00	1.964	9.13	0.40	3.0	97.0	0.0	-0.28	0.72	0.69	0.86	3.21	32731	3926	22	73	9	0	0	logfile
✔	6HMA	0243	2023-07-14	2018-09-12	2.65	2.72	2.61	2.7	0.012	1.00	0.0	0.06	13.74	0.01	1.546	2.29	0.00	7.3	92.7	0.0	-4.23	0.49	0.72	4.01	2.7	0.008	0.83	0.0	0.04	15.49	0.01	1.841	5.09	4.66	6.7	93.3	0.0	-1.59	1.30	0.71	0.87	3.33	86401	3039	36	2949	237	0	0	logfile
✔	6HN4	0246	2023-07-04	2018-09-14	4.2	4.43	—	4.1	0.007	1.50	2.0	0.07	9.75	0.01	2.187	6.18	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.003	0.72	0.0	0.05	11.68	0.00	2.112	13.53	0.00	7.7	92.3	0.0	-0.37	1.14	0.76	0.77	—	5702	700	2	0	6	0	0	logfile
✔	6HN5	0247	2023-07-04	2018-09-14	3.2	3.48	—	3.3	0.012	1.20	0.0	0.07	9.75	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.003	0.70	0.0	0.05	13.19	0.00	2.182	10.21	0.35	7.3	92.7	0.0	-2.09	0.77	0.78	0.80	2.25	7869	953	7	0	11	0	0	logfile
✔	6HRA	0257	2023-07-05	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.64	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.003	0.72	0.0	0.04	13.93	0.00	2.089	12.23	1.06	4.9	95.1	0.0	-0.84	1.64	0.71	0.85	1.41	10818	1450	5	0	3	0	0	logfile

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