Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NDY	0443	2021-12-02	2018-12-14	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12531	1596	11	0	20	0	0	logfile
✔	6NPH	0470	2021-12-01	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	17.82	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.003	0.61	0.0	0.04	16.78	0.00	2.216	7.30	1.87	5.5	94.5	0.0	0.48	1.11	0.59	0.83	2.48	7504	944	4	0	13	0	0	logfile
✘	6NPJ	0471	2021-12-01	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	6.75	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6186	768	2	0	0	0	0	logfile
✔	6NPK	0472	2021-12-01	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.004	0.69	0.0	0.04	14.44	0.00	2.169	9.31	0.53	7.0	93.0	0.0	0.09	1.22	0.62	0.81	1.92	7134	944	2	0	0	0	0	logfile
✔	6NPL	0473	2021-12-02	2019-01-17	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13774	1722	4	0	13	0	0	logfile
✔	6NPY	0476	2021-12-01	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.14	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	6NQ0	0477	2021-12-01	2019-01-18	3.7	3.84	—	3.8	0.005	0.89	0.0	0.35	14.91	0.01	2.200	3.70	0.54	4.4	95.6	0.0	-6.31	0.59	0.84	2.13	3.8	0.003	0.68	0.0	0.04	16.12	0.00	2.272	7.50	0.36	3.4	96.6	0.0	-0.41	1.24	0.59	0.84	1.72	10140	1242	4	0	2	0	0	logfile
✔	6NQ1	0478	2021-12-01	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.69	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.004	0.71	0.0	0.04	16.06	0.01	2.054	9.73	0.36	5.3	94.7	0.0	0.88	1.29	0.58	0.82	1.98	10046	1242	2	0	0	0	0	logfile
✔	6NQ2	0479	2021-12-01	2019-01-18	3.4	3.50	—	3.5	0.009	0.95	0.0	0.36	15.15	0.01	2.258	3.85	0.36	5.1	94.9	0.0	-5.59	0.58	0.83	2.72	3.5	0.004	0.64	0.0	0.04	15.97	0.00	2.119	7.06	0.54	5.1	94.9	0.0	1.33	0.58	0.58	0.84	2.01	10140	1242	4	0	2	0	0	logfile
✔	6NSJ	0498	2021-12-01	2019-01-24	2.7	3.69	2.67	3.6	0.007	1.12	0.0	0.06	13.78	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.004	0.63	0.0	0.04	14.27	0.00	2.223	5.32	1.74	4.1	95.9	0.0	1.71	0.52	0.56	0.72	3.08	9096	1092	12	0	18	0	0	logfile
✔	6NSK	0499	2021-12-01	2019-01-24	2.7	2.82	2.55	3.1	0.008	1.11	0.0	0.06	14.47	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.002	0.56	0.0	0.04	14.80	0.00	2.256	5.65	1.96	2.9	97.1	0.0	2.76	0.42	0.61	0.80	3.31	9096	1092	12	0	18	0	0	logfile
✔	6NT5	0502	2021-12-01	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.52	0.00	2.325	6.86	0.00	2.0	98.0	0.0	1.95	1.16	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✘	6NT6	0503	2021-12-01	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4198	556	2	0	0	0	0	logfile
✔	6NT7	0504	2021-12-01	2019-01-28	4.0	4.27	—	4.1	0.008	0.91	0.0	0.05	14.13	0.01	2.238	5.64	0.00	6.2	93.8	0.0	-3.29	0.75	0.85	—	4.1	0.006	0.75	0.0	0.04	15.86	0.00	2.209	10.97	0.78	4.6	95.4	0.0	0.58	1.19	0.76	0.85	—	4729	588	3	0	1	0	0	logfile
✔	6NT9	0506	2021-12-01	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.004	0.53	0.0	0.04	14.49	0.00	2.218	4.29	0.36	1.8	98.2	0.0	2.41	0.59	0.82	0.87	3.11	9906	1228	4	0	0	0	0	logfile
✔	6NTS	0510	2021-12-01	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	2.01	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.003	0.63	0.0	0.04	15.23	0.00	2.078	8.53	0.00	2.4	97.6	0.0	0.80	2.30	0.92	0.85	1.23	9956	1240	5	0	3	0	0	logfile
✔	6NUR	0520	2021-12-01	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.28	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.003	0.58	0.0	0.04	14.53	0.00	2.177	6.89	0.31	2.4	97.6	0.0	0.53	0.72	0.58	0.83	3.10	8647	1087	5	0	2	0	0	logfile
✔	6NUS	0521	2021-12-01	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.003	0.62	0.0	0.04	14.95	0.00	2.168	10.76	0.82	2.7	97.3	0.0	0.57	1.49	0.54	0.72	1.45	6632	827	3	0	2	0	0	logfile
✔	6NYB	0541	2021-12-01	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.97	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.003	0.76	0.0	0.04	14.00	0.00	1.958	13.43	0.00	3.2	96.8	0.0	0.36	3.17	0.79	0.80	—	8842	1097	6	0	6	0	0	logfile
✔	6o1L	0591	2021-12-02	2019-02-20	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26877	1579	17	36	0	0	13324	logfile

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