Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1V	0606	2021-12-01	2019-02-21	3.2	3.50	—	3.6	0.014	1.79	0.0	0.08	13.46	0.01	1.933	6.31	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.61	0.0	0.04	16.17	0.00	2.009	6.15	0.19	2.2	97.8	0.0	0.81	1.27	0.60	0.83	2.41	9711	1179	3	0	28	0	0	logfile
✘	6o2P	0611	2021-12-01	2019-02-24	3.3	3.80	—	3.8	0.014	1.82	0.0	0.09	14.02	0.00	1.403	1.42	1.16	4.5	95.5	0.0	-3.17	0.51	0.72	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9767	1179	3	0	29	0	0	logfile
✘	6o7K	0643	2021-12-01	2019-03-08	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.76	—	—	—	4.1	0.004	0.68	0.0	0.04	15.48	0.00	2.074	20.91	0.04	7.9	91.7	0.5	-1.60	—	0.90	0.84	—	57748	2934	25	1622	0	0	0	logfile
✔	6o7T	0644	2021-12-02	2019-03-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19730	2824	15	0	0	0	0	logfile
✔	6o84	0650	2021-12-01	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.78	0.0	0.04	16.20	0.01	2.144	9.15	0.48	5.6	94.4	0.0	1.22	1.29	0.61	0.81	2.18	6224	712	2	0	118	0	0	logfile
✔	6J5A	0670	2021-12-01	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	13.04	0.00	2.218	11.14	0.00	8.5	91.5	0.0	-1.38	1.80	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6J50	0675	2021-12-02	2019-01-10	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47422	5061	34	349	10	0	0	logfile
✘	6J5T	0680	2021-12-01	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.02	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	6J5U	0681	2021-12-01	2019-01-12	3.9	4.02	—	4.0	0.011	1.36	1.0	0.07	14.28	0.01	1.599	12.15	2.32	14.4	85.3	0.4	-5.13	0.78	0.77	1.14	4.0	0.004	0.92	0.0	0.05	16.31	0.01	2.108	23.39	0.58	12.0	88.0	0.0	-2.82	0.88	0.78	0.77	1.42	9288	1162	4	0	2	0	0	logfile
✔	6J5V	0682	2021-12-02	2019-01-12	4.25	4.42	—	4.3	0.010	1.18	0.0	0.07	16.33	0.01	2.263	10.14	0.94	14.2	85.8	0.0	-4.88	0.83	0.81	—	4.3	0.004	0.84	0.0	0.05	14.47	0.01	2.154	19.34	0.00	12.5	87.5	0.0	-2.67	0.65	0.82	0.80	—	10529	1315	4	0	2	0	0	logfile
✔	6J5W	0683	2021-12-01	2019-01-12	3.7	3.66	—	3.7	0.008	1.21	0.0	0.07	11.81	0.01	2.236	5.67	0.89	11.0	88.5	0.4	-4.62	0.77	0.81	2.83	3.7	0.003	0.80	0.0	0.05	15.00	0.00	2.099	10.73	0.79	9.1	90.8	0.1	-1.64	0.68	0.78	0.81	2.20	8985	1122	2	0	1	0	0	logfile
✔	6J6J	0689	2021-12-01	2019-01-15	3.2	3.36	—	3.4	0.007	1.12	0.0	0.06	13.72	0.00	2.291	6.43	0.00	11.1	88.9	0.0	-3.36	0.54	0.68	4.31	3.4	0.004	0.90	0.0	0.05	14.76	0.00	2.215	12.01	0.29	7.5	92.5	0.0	-2.59	1.33	0.71	0.81	3.86	3624	476	12	0	4	12	0	logfile
✔	6J6K	0690	2021-12-01	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.38	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.007	0.86	0.0	0.05	14.64	0.00	2.174	9.90	0.58	9.6	89.5	0.9	-2.36	0.59	0.71	0.81	4.44	3548	476	4	0	0	0	0	logfile
✔	6KKR	0701	2021-12-01	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	20.0	0.003	0.73	0.0	0.04	12.88	0.00	2.182	10.52	1.81	3.5	96.5	0.0	0.88	1.60	0.11	0.09	0.38	8416	1074	4	0	24	0	0	logfile
✔	6KKT	0702	2021-12-01	2019-07-27	2.9	2.94	—	7.1	0.010	1.16	0.0	0.06	10.98	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	20.0	0.012	1.31	1.0	0.04	12.92	0.00	1.981	13.34	1.70	3.9	96.1	0.0	0.18	0.64	0.15	0.08	0.66	8416	1074	4	0	24	0	0	logfile
✔	6KKU	0703	2021-12-01	2019-07-27	3.5	3.59	—	3.6	0.009	1.06	0.0	0.06	10.69	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.66	0.0	0.04	14.38	0.00	2.191	6.76	0.00	2.1	97.9	0.0	1.09	1.29	0.61	0.82	1.45	8412	1074	4	0	20	0	0	logfile
✔	6KMF	0724	2021-12-01	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.004	0.76	0.0	0.04	16.30	0.01	2.154	9.57	0.50	7.8	92.2	0.0	-3.01	0.50	0.52	0.79	2.38	7704	1011	4	0	0	0	0	logfile
✔	6KNF	0730	2021-12-01	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.005	0.58	0.0	0.05	15.40	0.00	2.010	7.33	5.15	1.8	98.2	0.0	-0.72	0.93	0.83	0.91	4.41	7749	1002	6	0	6	0	0	logfile
✘	6KNG	0731	2021-12-01	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✔	6KPF	0744	2021-12-01	2019-08-15	2.9	3.03	—	3.0	0.009	1.10	0.0	0.05	15.24	0.01	2.215	5.45	0.00	4.4	95.4	0.2	-4.46	0.67	0.82	4.15	3.0	0.013	1.26	0.0	0.04	17.11	0.00	2.067	11.58	2.77	3.4	96.4	0.2	-0.56	0.48	0.65	0.84	3.61	8775	1135	6	0	1	0	0	logfile

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