Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6HJP	0235	2022-12-14	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.15	9.0	0.09	11.50	0.02	2.158	3.98	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.64	0.0	0.04	13.58	0.00	2.081	6.72	0.25	5.0	95.0	0.0	-0.03	0.63	0.87	0.89	2.87	22134	2784	30	0	51	0	0	logfile
✔	6HJQ	0236	2022-12-14	2018-09-04	4.1	4.38	4.03	4.1	0.005	0.91	0.0	0.06	10.01	0.01	1.406	5.06	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.004	0.64	0.0	0.04	11.22	0.00	1.971	9.97	0.00	5.7	94.3	0.0	-0.31	1.65	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	6HJR	0237	2022-12-12	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.10	0.0	0.06	11.09	0.01	2.200	6.70	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.003	0.62	0.0	0.04	11.92	0.00	2.087	10.19	0.00	7.6	92.3	0.1	-0.88	0.59	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile
✔	6HKo	0238	2022-12-19	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.98	0.01	1.761	5.38	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.007	0.73	0.0	0.05	16.21	0.00	1.884	12.36	0.68	5.5	94.5	0.0	-0.97	1.29	0.74	0.87	2.99	34518	4154	23	73	8	0	0	logfile
✔	6HLQ	0239	2022-12-18	2018-09-11	3.18	3.18	—	3.2	0.006	0.90	0.0	0.06	12.11	0.01	1.742	5.25	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.1	0.004	0.64	0.0	0.04	16.51	0.00	1.956	9.16	0.43	3.8	96.2	0.0	-0.71	0.71	0.69	0.87	3.59	32731	3926	22	73	9	0	0	logfile
✔	6HLR	0240	2022-12-16	2018-09-11	3.18	3.30	—	3.3	0.007	0.95	0.0	0.06	12.28	0.01	1.734	4.76	0.15	4.9	95.1	0.0	-4.37	0.70	0.84	4.14	3.2	0.005	0.67	0.0	0.04	16.23	0.00	1.968	9.56	0.47	3.7	96.3	0.0	-0.37	1.64	0.72	0.87	3.30	32370	3881	21	73	8	0	0	logfile
✔	6HLS	0241	2022-12-16	2018-09-11	3.21	3.27	—	3.3	0.007	0.94	0.0	0.06	10.21	0.01	2.231	5.19	0.32	5.4	94.6	0.0	-4.54	0.64	0.82	4.01	3.2	0.003	0.63	0.0	0.04	15.03	0.00	2.091	9.11	0.26	3.5	96.5	0.0	-0.81	1.64	0.66	0.85	2.95	30954	3896	17	0	7	0	0	logfile
✔	6HMA	0243	2022-12-16	2018-09-12	2.65	2.72	2.61	2.7	0.012	1.00	0.0	0.06	13.74	0.01	1.546	2.32	0.00	7.3	92.7	0.0	-4.23	0.49	0.72	4.01	2.7	0.008	0.84	0.0	0.04	15.44	0.01	1.841	5.24	5.00	6.7	93.3	0.0	-1.60	1.30	0.71	0.87	3.50	86401	3039	36	2949	237	0	0	logfile
✔	6HN4	0246	2022-12-11	2018-09-14	4.2	4.43	—	4.1	0.007	1.49	2.0	0.07	9.72	0.01	2.187	6.45	0.00	6.9	91.4	1.8	-2.18	0.73	0.70	—	4.2	0.003	0.71	0.0	0.05	12.01	0.00	2.115	13.89	0.00	6.7	93.3	0.0	0.00	1.13	0.76	0.77	—	5702	700	2	0	6	0	0	logfile
✔	6HN5	0247	2022-12-11	2018-09-14	3.2	3.48	—	3.3	0.012	1.19	0.0	0.07	9.71	0.01	2.281	7.43	0.12	10.8	89.2	0.0	-3.94	0.76	0.77	3.25	3.3	0.003	0.67	0.0	0.05	13.00	0.00	2.185	10.73	0.12	7.9	92.1	0.0	-2.14	0.77	0.79	0.80	2.43	7869	953	7	0	11	0	0	logfile
✔	6HQE	0252	2022-12-12	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.74	0.0	0.04	12.12	0.01	2.264	19.28	0.00	2.6	97.4	0.0	1.06	1.03	0.65	0.84	—	9360	1196	52	0	0	0	0	logfile
✔	6HRA	0257	2022-12-12	2018-09-26	3.7	3.89	3.68	3.8	0.007	0.93	0.0	0.05	9.85	0.01	2.227	6.68	0.18	7.4	92.6	0.0	-5.34	0.70	0.83	2.52	3.8	0.003	0.70	0.0	0.04	13.96	0.00	2.104	13.32	0.53	4.8	95.2	0.0	-0.87	1.64	0.71	0.84	1.48	10818	1450	5	0	3	0	0	logfile
✔	6HRB	0258	2022-12-12	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.004	0.74	0.0	0.04	13.42	0.00	2.038	15.24	0.35	4.0	96.0	0.0	-0.11	1.27	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6HRE	0259	2022-12-11	2018-09-26	3.2	2.74	2.87	3.3	0.019	1.47	0.0	0.11	13.34	0.01	2.474	6.57	0.00	12.0	88.0	0.0	-4.17	0.32	0.80	4.40	2.8	0.007	0.94	0.0	0.05	17.28	0.00	2.123	9.50	0.50	9.3	90.7	0.0	-3.49	0.81	0.29	0.78	3.87	3522	462	6	0	0	0	0	logfile
✔	6HRF	0260	2022-12-11	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6HS7	0264	2022-12-11	2018-09-28	4.6	3.02	4.27	4.3	0.006	1.00	1.0	0.05	14.59	0.01	2.156	6.43	0.04	10.5	89.5	0.0	-5.02	0.77	0.69	—	4.3	0.003	0.72	0.0	0.04	14.07	0.00	2.125	10.42	0.05	7.9	92.1	0.0	-2.28	0.94	0.79	0.71	—	52890	6905	25	0	0	0	0	logfile
✔	6HU7	0273	2022-12-11	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.36	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	2.9	0.003	0.61	0.0	0.04	15.35	0.00	2.300	8.62	1.46	2.5	97.1	0.3	2.87	1.61	0.53	0.87	3.50	4890	609	7	0	0	0	0	logfile
✔	6HUD	0274	2022-12-11	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	6.89	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.006	0.86	0.0	0.05	13.22	0.00	2.169	25.57	0.61	11.8	88.2	0.0	-5.00	1.50	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✔	6HUJ	0279	2022-12-13	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.86	0.0	0.06	8.77	0.01	2.265	4.71	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.003	0.57	0.0	0.04	13.90	0.00	2.161	7.68	0.25	3.0	97.0	0.0	0.06	0.67	0.76	0.86	4.11	15255	1812	15	0	35	0	0	logfile
✔	6HUK	0280	2022-12-13	2018-10-08	3.69	3.75	3.64	3.7	0.006	1.03	0.0	0.06	9.57	0.01	2.222	5.10	0.00	4.0	96.0	0.0	-3.20	0.71	0.82	3.81	3.7	0.003	0.63	0.0	0.04	14.38	0.00	2.164	11.05	0.37	3.0	97.0	0.0	-0.17	0.80	0.73	0.84	3.28	15300	1815	16	0	34	0	0	logfile

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