Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6HCY	0199	2022-07-03	2018-08-17	3.1	3.48	3.04	3.4	0.012	1.14	0.0	0.06	12.85	0.01	1.180	2.66	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11007	1308	6	0	15	0	0	logfile
✘	6HD1	0200	2022-07-03	2018-08-17	3.8	3.97	3.67	3.8	0.012	1.08	0.0	0.06	12.69	0.01	1.179	3.39	0.79	6.2	93.8	0.0	-5.57	0.74	0.85	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11007	1308	6	0	15	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6HD7	0202	2022-07-07	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	25.04	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.009	0.84	0.0	0.05	17.90	0.01	1.949	19.83	1.00	7.9	91.7	0.4	-1.37	1.56	0.76	0.87	1.74	141153	7514	52	3767	234	0	0	logfile
✔	6HDD	0204	2022-07-05	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.00	0.0	0.05	13.37	0.01	1.472	25.40	0.00	17.3	82.3	0.4	-3.48	5.56	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✘	6HE4	0209	2022-07-03	2018-08-20	4.85	4.88	—	4.8	0.036	3.64	111.0	0.21	18.70	0.03	1.953	1.87	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12684	1602	11	0	10	0	0	logfile
✔	6HE5	0210	2022-07-05	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.90	0.0	0.05	14.68	0.01	2.105	21.82	0.04	4.5	95.3	0.2	-0.71	1.74	0.57	0.75	—	24633	3162	20	0	0	0	0	logfile
✔	6HE7	0211	2022-07-05	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.89	0.0	0.05	17.48	0.00	1.904	14.13	0.16	3.1	96.8	0.1	-0.09	0.88	0.63	0.78	1.62	23821	3059	14	0	0	0	0	logfile
✘	6HiN	0225	2022-07-04	2018-08-30	4.1	4.24	—	4.2	0.009	1.15	0.0	0.07	11.82	0.01	1.347	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	10	0	30	0	0	logfile
✘	6Hio	0226	2022-07-04	2018-08-30	4.2	4.49	—	4.2	0.009	1.12	0.0	0.06	11.19	0.01	1.345	8.32	0.29	1.9	98.1	0.0	-3.81	0.89	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16085	1925	10	0	30	0	0	logfile
✘	6HiQ	0227	2022-07-04	2018-08-30	3.2	3.35	—	3.3	0.006	1.03	0.0	0.06	9.91	0.01	1.353	4.20	0.29	1.6	98.4	0.0	-4.97	0.82	0.84	3.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16110	1925	10	0	30	0	0	logfile
✔	6HiS	0228	2022-07-04	2018-08-30	4.5	4.60	—	4.5	0.010	1.55	0.0	0.08	11.89	0.01	2.228	16.80	0.29	4.9	95.1	0.0	-2.60	0.76	0.77	—	4.5	0.003	0.74	0.0	0.05	12.92	0.00	2.077	14.41	0.00	5.6	94.4	0.0	-0.50	1.36	0.77	0.78	—	16240	1935	10	0	40	0	0	logfile
✔	6HiX	0231	2022-07-06	2018-08-31	3.39	3.49	3.39	3.4	0.008	1.31	12.0	0.05	14.85	0.01	1.582	14.43	4.18	4.5	95.2	0.3	-3.09	0.84	0.82	2.30	3.4	0.003	0.70	0.0	0.04	16.97	0.01	1.974	12.86	0.58	5.5	94.4	0.1	-0.15	0.77	0.87	0.86	2.11	133849	14850	98	591	477	0	0	logfile
✔	6HiY	0232	2022-07-07	2018-08-31	3.27	3.35	3.30	3.3	0.008	1.23	3.0	0.05	16.68	0.01	1.653	13.17	7.79	3.7	96.0	0.2	-2.97	0.87	0.87	2.46	3.3	0.007	0.74	1.0	0.04	17.16	0.01	1.860	12.36	0.48	5.0	94.9	0.1	0.02	2.06	0.87	0.87	2.35	100780	10991	49	478	181	0	0	logfile
✘	6HiZ	0233	2022-07-05	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.38	0.0	0.06	18.06	0.01	1.229	11.28	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76845	9056	33	143	19	3	0	logfile
✔	6HJN	0234	2022-07-03	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	11.99	0.02	1.734	5.16	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.004	0.66	0.0	0.04	13.45	0.00	2.090	6.53	0.31	9.0	91.0	0.0	-0.32	0.54	0.89	0.90	3.41	12309	1488	12	0	48	0	0	logfile
✔	6HJP	0235	2022-07-05	2018-09-04	3.3	3.74	3.29	3.5	0.008	1.15	9.0	0.09	11.50	0.02	2.158	3.98	2.40	7.9	91.9	0.2	-2.34	0.88	0.90	3.43	3.5	0.003	0.62	0.0	0.04	13.64	0.00	2.076	6.47	0.25	4.7	95.3	0.0	0.15	0.62	0.87	0.89	2.77	22134	2784	18	0	51	0	0	logfile
✔	6HJQ	0236	2022-07-05	2018-09-04	4.1	4.38	4.03	4.1	0.005	0.91	0.0	0.06	10.01	0.01	1.406	5.06	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.004	0.64	0.0	0.04	11.22	0.00	1.971	9.97	0.00	5.7	94.3	0.0	-0.31	1.65	0.83	0.87	—	22530	2871	18	0	42	0	0	logfile
✔	6HJR	0237	2022-07-03	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.10	0.0	0.06	11.09	0.01	2.200	6.70	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.003	0.63	0.0	0.04	11.86	0.00	2.099	10.11	0.00	7.9	92.0	0.1	-0.82	0.59	0.83	0.87	—	12579	1578	12	0	31	0	0	logfile
✔	6HKo	0238	2022-07-06	2018-09-07	3.42	3.56	—	3.5	0.006	0.90	0.0	0.06	11.98	0.01	1.761	5.38	0.14	5.6	94.4	0.0	-4.42	0.73	0.83	3.57	3.5	0.004	0.77	0.0	0.04	16.00	0.00	1.943	12.12	0.24	4.3	95.7	0.0	-1.09	1.29	0.74	0.86	2.91	34518	4154	23	73	8	0	0	logfile

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