Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6H6F	0150	2021-09-03	2018-07-27	3.72	2.83	—	3.6	0.020	1.68	1.0	0.09	10.88	0.01	2.182	0.94	0.00	1.7	98.1	0.2	0.96	0.83	0.77	1.63	3.4	0.004	0.69	0.0	0.04	15.60	0.00	2.052	14.01	0.28	3.6	96.3	0.0	1.10	0.95	0.84	0.78	1.44	114303	14388	6	0	0	0	0	logfile
✔	6HA1	0176	2021-09-06	2018-08-07	3.1	3.55	—	3.3	0.009	1.10	0.0	0.06	17.11	0.01	1.892	7.09	0.90	8.8	90.7	0.6	-3.85	0.78	0.79	2.71	3.3	0.006	0.74	0.0	0.04	17.22	0.01	1.612	17.36	0.47	8.5	91.1	0.4	-2.04	0.54	0.82	0.85	1.99	140824	5299	52	4622	1	0	0	logfile
✔	6HA8	0177	2021-09-08	2018-08-07	3.5	3.62	—	3.6	0.010	1.30	1.0	0.07	17.03	0.01	1.595	7.66	0.87	9.2	90.4	0.5	-3.94	0.78	0.79	1.69	3.6	0.006	0.75	0.0	0.04	17.15	0.01	1.528	18.19	0.26	8.7	90.9	0.4	-1.84	1.20	0.78	0.79	1.20	146404	6052	55	4610	3	0	0	logfile
✔	6HBL	0188	2021-09-16	2018-08-10	3.7	3.77	—	3.7	0.003	0.71	0.0	0.05	10.41	0.01	2.075	11.49	0.00	9.1	90.5	0.5	-3.64	0.67	0.60	0.60	3.7	0.008	0.93	3.0	0.05	15.33	0.01	1.617	21.34	0.27	7.6	92.4	0.1	-2.16	1.67	0.79	0.83	2.24	233820	30600	135	0	0	0	0	logfile
✔	6HBU	0190	2021-09-02	2018-08-13	3.09	3.04	—	3.1	0.009	1.18	0.0	0.06	11.06	0.01	1.965	4.88	0.00	4.9	94.6	0.5	-5.40	0.75	0.86	5.08	3.0	0.006	0.76	0.0	0.05	14.91	0.00	2.177	7.86	0.30	5.4	94.4	0.2	-0.04	0.58	0.78	0.89	3.93	9146	1168	4	0	4	0	0	logfile
✔	6HCF	0192	2021-09-15	2018-08-14	3.9	4.03	3.82	4.0	0.019	1.11	8.0	0.05	16.28	0.01	1.109	5.24	0.37	9.8	90.0	0.2	-5.11	0.76	0.84	1.86	4.0	0.009	0.72	5.0	0.04	17.23	0.01	1.095	10.66	0.51	6.8	93.1	0.0	-2.38	2.27	0.76	0.84	1.24	226754	12928	108	5736	310	4	0	logfile
✔	6HCG	0193	2021-09-06	2018-08-15	4.3	3.90	4.21	3.9	0.011	1.31	0.0	0.07	10.57	0.01	1.943	35.38	0.00	9.9	90.1	0.0	-4.43	0.82	0.73	—	3.7	0.004	0.77	0.0	0.05	12.70	0.00	2.068	19.33	0.01	9.5	90.5	0.0	-1.95	2.16	0.84	0.77	—	85185	11295	45	0	0	0	0	logfile
✔	6HCJ	0194	2021-09-12	2018-08-15	3.8	3.88	3.74	3.9	0.012	1.04	3.0	0.05	16.71	0.01	1.284	4.51	0.36	10.8	88.9	0.4	-5.25	0.62	0.69	0.55	3.8	0.008	0.82	3.0	0.04	16.79	0.01	1.089	10.71	0.18	8.7	91.2	0.1	-2.81	1.84	0.70	0.83	1.39	219683	11821	106	5817	308	0	0	logfile
✔	6HCo	0196	2021-09-03	2018-08-15	3.58	4.08	—	3.7	0.016	1.03	0.0	0.11	10.29	0.01	2.082	7.77	0.45	7.9	92.1	0.0	-4.59	0.65	0.75	1.63	3.7	0.004	0.77	0.0	0.04	13.07	0.00	2.126	16.56	0.45	6.2	93.8	0.0	-0.24	1.51	0.67	0.82	1.94	12338	1576	8	0	5	0	0	logfile
✔	6HCR	0198	2021-09-09	2018-08-16	3.5	3.63	—	3.6	0.007	1.10	0.0	0.06	11.32	0.01	2.353	2.93	0.00	14.7	85.3	0.0	-4.63	0.83	0.86	3.48	3.6	0.004	0.70	0.0	0.05	14.75	0.00	2.109	6.34	0.22	12.9	87.1	0.0	-3.13	0.55	0.82	0.86	2.52	213720	26460	60	0	0	0	0	logfile
✔	6HCY	0199	2021-09-03	2018-08-17	3.1	3.48	3.04	3.4	0.030	1.92	0.0	0.06	19.58	0.02	2.017	2.67	0.79	6.2	93.8	0.0	-6.30	0.67	0.89	5.10	3.4	0.003	0.99	0.0	0.04	17.65	0.00	2.245	7.07	0.35	4.5	95.5	0.0	0.42	1.78	0.75	0.91	3.15	11007	1308	6	0	15	0	0	logfile
✔	6HD1	0200	2021-09-03	2018-08-17	3.8	3.97	3.67	3.8	0.030	1.89	0.0	0.06	19.38	0.02	1.971	3.40	0.79	6.2	93.8	0.0	-5.57	0.74	0.85	3.28	3.8	0.004	1.04	0.0	0.04	17.10	0.00	2.143	10.20	0.44	4.4	95.6	0.0	0.37	0.84	0.75	0.85	2.17	11007	1308	6	0	15	0	0	logfile
✔	6HD5	0201	2021-09-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.76	0.0	0.04	12.33	0.00	2.149	16.76	0.00	5.8	94.1	0.1	-0.19	2.13	0.45	0.51	—	9707	1234	3	0	0	0	0	logfile
✔	6HD7	0202	2021-09-06	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.05	14.93	0.00	0.345	24.87	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.78	0.0	0.04	17.70	0.01	2.016	18.29	0.81	7.4	92.3	0.4	-1.08	1.59	0.76	0.87	1.74	141153	7514	52	3767	234	0	0	logfile
✔	6HDD	0204	2021-09-05	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.06	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.10	7.0	0.06	13.62	0.01	1.459	25.88	0.00	15.9	83.8	0.2	-3.42	5.57	0.72	0.30	—	28154	3605	7	0	0	0	0	logfile
✔	6HE4	0209	2021-09-03	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	18.70	0.03	1.953	1.79	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.02	0.0	0.05	14.61	0.01	1.888	30.31	0.00	7.9	91.4	0.8	-1.26	2.40	0.59	0.78	—	12684	1602	11	0	10	0	0	logfile
✔	6HE5	0210	2021-09-04	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.07	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.004	0.87	0.0	0.05	14.48	0.01	2.110	20.96	0.04	4.1	95.8	0.1	-0.70	1.80	0.57	0.75	—	24633	3162	20	0	0	0	0	logfile
✔	6HE7	0211	2021-09-04	2018-08-20	3.69	3.80	—	3.8	0.039	3.60	213.0	0.21	17.65	0.03	2.081	3.03	4.93	5.6	92.9	1.6	-2.44	0.64	0.70	2.28	3.8	0.012	0.76	0.0	0.04	17.50	0.00	1.904	11.64	0.32	2.8	97.2	0.0	0.33	0.95	0.63	0.77	1.56	23821	3059	14	0	0	0	0	logfile
✔	6HiN	0225	2021-09-03	2018-08-30	4.1	4.24	—	4.2	0.009	1.18	0.0	0.07	11.83	0.01	2.367	6.44	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	4.1	0.003	0.74	0.0	0.04	12.14	0.00	2.139	12.28	0.00	3.4	96.6	0.0	-2.11	0.78	0.82	0.82	—	14220	1675	10	0	30	0	0	logfile
✔	6Hio	0226	2021-09-03	2018-08-30	4.2	4.49	—	4.2	0.009	1.15	0.0	0.06	11.28	0.01	2.185	8.20	0.29	1.9	98.1	0.0	-3.81	0.89	0.85	—	4.2	0.003	0.63	0.0	0.04	11.11	0.00	2.185	9.35	0.00	2.2	97.8	0.0	-0.04	0.72	0.88	0.84	—	16085	1925	10	0	30	0	0	logfile

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