Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o1o	0454	2023-04-23	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6NN6	0458	2023-04-23	2019-01-14	3.9	3.97	—	3.8	0.010	1.02	0.0	0.05	25.83	0.01	2.144	9.01	0.81	3.8	96.0	0.2	-5.04	0.83	0.80	2.90	3.8	0.003	0.63	0.0	0.04	26.56	0.00	2.077	11.67	0.61	3.5	96.5	0.0	0.41	1.77	0.82	0.78	1.35	15125	1149	12	290	0	0	0	logfile
✔	6NoG	0468	2023-04-25	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	6NP0	0469	2023-04-24	2019-01-17	2.92	3.16	3.01	3.1	0.011	1.29	0.0	0.08	10.43	0.01	2.270	3.63	0.55	5.2	94.8	0.0	-3.90	0.69	0.72	2.76	3.1	0.003	0.65	0.0	0.04	14.69	0.00	2.224	5.64	3.29	2.7	97.3	0.0	0.36	0.84	0.79	0.85	2.73	16891	1975	20	0	41	0	0	logfile
✔	6NPH	0470	2023-04-20	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	17.82	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.004	0.66	0.0	0.04	17.40	0.00	2.224	6.39	2.27	6.8	93.2	0.0	-0.33	0.92	0.59	0.84	2.98	7504	944	4	0	13	0	0	logfile
✔	6NPJ	0471	2023-04-20	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.71	0.0	0.04	17.43	0.00	2.278	10.04	0.30	6.1	93.9	0.0	-2.01	0.85	0.63	0.78	2.22	6186	768	2	0	0	0	0	logfile
✔	6NPK	0472	2023-04-20	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.003	0.61	0.0	0.04	14.36	0.00	2.173	9.10	0.27	6.3	93.7	0.0	0.11	1.23	0.61	0.81	2.02	7134	944	2	0	0	0	0	logfile
✔	6NPL	0473	2023-04-23	2019-01-17	2.9	2.52	—	3.0	0.009	1.18	0.0	0.05	16.97	0.01	2.264	4.08	7.67	8.5	91.5	0.1	-4.62	0.70	0.70	1.19	3.0	0.003	0.76	0.0	0.04	16.90	0.00	2.232	10.59	3.14	7.2	92.8	0.0	-0.50	1.03	0.78	0.86	2.48	13774	1722	4	0	13	0	0	logfile
✔	6NPY	0476	2023-04-20	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.91	0.0	0.05	17.24	0.00	2.196	17.36	0.60	10.2	89.8	0.0	-2.29	1.10	0.78	0.70	0.72	7586	965	3	0	1	0	0	logfile
✘	6NQ0	0477	2023-04-21	2019-01-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	6NQ1	0478	2023-04-21	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.003	0.70	0.0	0.04	15.93	0.00	2.048	9.83	0.18	5.2	94.8	0.0	0.85	1.28	0.58	0.82	1.92	10046	1242	2	0	0	0	0	logfile
✘	6NQ2	0479	2023-04-21	2019-01-18	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	6NQD	0485	2023-04-25	2019-01-21	3.9	3.97	—	3.9	0.012	1.40	0.0	0.09	13.92	0.01	2.213	14.68	8.15	10.9	88.3	0.8	-3.70	0.62	0.76	2.65	3.9	0.004	0.84	0.0	0.05	15.77	0.00	2.094	17.83	0.87	8.6	91.4	0.0	-1.68	1.21	0.62	0.77	1.42	20175	2403	54	0	141	0	0	logfile
✔	6NR2	0487	2023-04-27	2019-01-22	4.0	4.24	3.95	4.1	0.007	0.98	0.0	0.05	10.05	0.01	2.256	5.92	0.17	4.1	95.9	0.0	-2.86	0.68	0.81	—	4.1	0.003	0.62	0.0	0.04	14.45	0.00	2.257	7.03	0.43	4.8	95.2	0.0	1.57	1.30	0.68	0.82	—	25788	3256	8	0	188	0	0	logfile
✘	6NR3	0488	2023-04-27	2019-01-22	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25180	3232	8	0	196	0	0	logfile
✔	6NR4	0489	2023-04-26	2019-01-22	4.3	4.39	4.24	4.3	0.006	0.93	0.0	0.05	9.96	0.01	2.319	3.34	0.39	4.7	95.3	0.0	-3.24	0.60	0.77	—	4.3	0.002	0.58	0.0	0.04	11.99	0.00	2.161	7.21	0.00	4.2	95.8	0.0	2.17	0.79	0.60	0.78	—	23264	3036	4	0	180	0	0	logfile
✔	6NSJ	0498	2023-04-21	2019-01-24	2.7	3.69	2.67	3.6	0.008	1.12	0.0	0.06	13.77	0.01	2.340	8.25	2.18	6.0	94.0	0.0	-4.40	0.61	0.75	5.00	3.6	0.003	0.59	0.0	0.04	14.04	0.00	2.234	5.27	1.09	4.0	96.0	0.0	2.26	0.53	0.58	0.75	2.91	9096	1092	12	0	18	0	0	logfile
✔	6NSK	0499	2023-04-21	2019-01-24	2.7	2.82	2.55	3.1	0.009	1.11	0.0	0.06	14.42	0.01	2.213	4.78	0.00	3.6	96.4	0.0	-3.23	0.62	0.77	5.14	3.1	0.003	0.58	0.0	0.04	14.68	0.00	2.265	5.59	1.74	3.7	96.3	0.0	2.52	0.42	0.65	0.82	3.62	9096	1092	12	0	18	0	0	logfile
✘	6NT3	0500	2023-04-21	2019-01-28	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	5	0	20	0	0	logfile
✘	6NT4	0501	2023-04-22	2019-01-28	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	5	0	20	0	0	logfile

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