Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N3Q	0336	2023-08-11	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.005	0.80	0.0	0.04	15.42	0.00	2.175	12.10	0.86	4.4	95.6	0.0	0.89	2.71	0.69	0.81	1.66	9931	1290	6	0	0	0	0	logfile
✔	6N4B	0339	2023-08-10	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.66	0.0	0.04	15.02	0.00	2.209	6.16	2.28	4.1	95.9	0.0	-0.82	0.67	0.51	0.79	2.88	8453	1121	6	0	3	0	0	logfile
✔	6N4Q	0341	2023-08-14	2018-11-20	3.6	4.01	3.86	4.0	0.008	1.03	0.0	0.06	10.17	0.01	2.288	3.98	0.11	7.9	92.1	0.0	-3.41	0.57	0.73	1.48	4.0	0.004	0.76	0.0	0.04	14.85	0.00	2.048	10.43	0.43	6.8	93.2	0.0	-0.55	0.82	0.58	0.74	1.18	16358	2052	12	0	0	0	0	logfile
✔	6N4R	0342	2023-08-14	2018-11-20	4.2	4.09	4.16	4.1	0.008	1.07	0.0	0.06	10.26	0.01	2.222	4.60	0.23	6.8	93.2	0.0	-3.27	0.66	0.76	—	4.1	0.003	0.72	0.0	0.04	12.63	0.00	2.154	11.44	0.12	5.9	94.1	0.0	-0.61	0.84	0.64	0.77	—	15444	1942	12	0	0	0	0	logfile
✔	6N51	0345	2023-08-13	2018-11-20	4.0	4.15	—	4.0	0.006	0.84	0.0	0.05	9.49	0.01	2.274	5.73	0.00	6.8	93.2	0.0	-3.65	0.71	0.81	—	4.0	0.003	0.73	0.0	0.04	13.60	0.00	2.116	13.70	0.41	4.8	95.2	0.0	-0.69	1.76	0.72	0.82	—	14087	1830	6	0	6	0	0	logfile
✔	6N52	0346	2023-08-12	2018-11-20	4.0	4.42	—	3.9	0.004	0.70	0.0	0.05	8.42	0.01	2.328	4.22	0.00	4.1	95.9	0.0	-4.16	0.72	0.78	—	3.9	0.004	0.69	0.0	0.04	11.54	0.00	2.181	12.75	0.29	6.6	93.4	0.0	-0.61	2.40	0.73	0.81	—	11108	1548	4	0	4	0	0	logfile
✔	6N57	0348	2023-08-21	2018-11-21	3.7	3.83	—	3.8	0.012	1.14	3.0	0.06	10.41	0.01	1.366	39.05	0.37	15.4	84.0	0.6	-4.55	0.75	0.82	2.12	3.8	0.003	0.69	0.0	0.04	15.32	0.00	2.140	11.35	0.21	7.2	92.6	0.2	-0.93	2.04	0.72	0.80	1.47	30233	3841	11	0	8	0	0	logfile
✔	6N58	0349	2023-08-21	2018-11-21	3.78	3.90	—	3.9	0.013	1.21	0.0	0.06	10.64	0.01	1.892	38.60	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	3.9	0.003	0.73	0.0	0.04	15.58	0.00	2.054	12.24	0.46	7.3	92.6	0.1	-1.38	3.03	0.73	0.81	1.26	30189	3833	11	0	8	0	0	logfile
✔	6N7H	0356	2023-08-15	2018-11-27	3.6	3.75	—	3.7	0.010	1.32	0.0	0.07	12.34	0.01	2.008	8.78	1.35	12.3	87.1	0.6	-4.46	0.64	0.76	2.32	3.7	0.003	0.78	0.0	0.05	16.01	0.00	2.038	11.22	0.45	9.9	90.1	0.0	-0.45	1.45	0.66	0.78	1.70	17242	2153	8	0	23	0	0	logfile
✔	6N7i	0357	2023-08-12	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.66	0.0	0.04	17.64	0.00	1.961	8.93	0.62	4.1	95.9	0.0	-0.76	1.31	0.73	0.81	2.15	10833	1350	12	15	8	1	0	logfile
✔	6N7N	0359	2023-08-12	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.002	0.60	0.0	0.04	16.36	0.00	1.919	10.78	0.22	4.0	96.0	0.0	-0.96	1.69	0.69	0.69	1.43	12854	1608	12	15	10	0	0	logfile
✔	6N7P	0360	2023-08-25	2018-11-27	3.6	3.72	—	3.6	0.011	1.17	5.0	0.07	15.19	0.01	2.186	5.79	3.35	6.9	92.4	0.6	-3.75	0.71	0.79	3.02	3.6	0.002	0.62	0.0	0.04	15.56	0.00	2.032	8.53	0.21	5.8	94.1	0.1	0.70	1.49	0.68	0.76	1.78	41488	4206	23	580	56	0	0	logfile
✘	6N7R	0361	2023-08-23	2018-11-28	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35750	2908	19	568	91	0	0	logfile
✔	6N7S	0362	2023-08-12	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.71	0.0	0.04	14.71	0.00	1.879	15.91	0.00	5.3	94.7	0.0	-2.15	1.90	0.71	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6N7T	0363	2023-08-12	2018-11-28	3.9	4.01	—	3.9	0.006	0.95	0.0	0.06	15.07	0.00	1.883	3.57	0.81	5.6	94.3	0.1	-3.82	0.76	0.72	1.04	3.9	0.003	0.65	0.0	0.04	17.02	0.00	1.867	10.61	0.22	4.4	95.6	0.0	-1.01	1.35	0.78	0.75	0.96	12890	1610	12	16	10	0	0	logfile
✔	6N7V	0364	2023-08-12	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.68	0.0	0.04	16.51	0.00	1.834	12.45	0.30	4.2	95.8	0.0	-0.67	0.95	0.78	0.77	1.06	12861	1606	12	16	10	0	0	logfile
✔	6N7W	0365	2023-08-10	2018-11-28	4.5	4.41	—	4.1	0.006	0.75	0.0	0.05	19.17	0.02	2.125	3.09	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	4.1	0.004	0.62	0.0	0.04	19.57	0.00	1.972	13.04	0.00	5.0	95.0	0.0	1.12	1.92	0.87	0.84	—	7837	808	5	70	2	0	0	logfile
✔	6N8J	0369	2023-08-18	2018-11-29	3.5	3.75	—	3.6	0.007	0.95	0.0	0.05	15.15	0.01	1.297	3.61	0.51	7.3	92.4	0.3	-4.65	0.82	0.87	3.28	3.6	0.006	0.68	0.0	0.04	16.08	0.00	1.822	9.96	0.39	8.7	91.1	0.1	-1.43	1.25	0.82	0.87	2.28	132554	7675	51	3326	96	0	0	logfile
✔	6N8K	0370	2023-08-18	2018-11-29	3.6	3.80	—	3.7	0.006	0.91	0.0	0.05	15.37	0.01	1.873	3.81	0.51	6.6	93.0	0.4	-4.28	0.79	0.87	2.97	3.7	0.005	0.68	0.0	0.04	16.48	0.00	1.999	10.88	0.82	8.6	91.2	0.1	-1.17	0.65	0.80	0.87	1.96	132821	7231	49	3479	212	0	0	logfile
✔	6N8L	0371	2023-08-18	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.54	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.005	0.67	1.0	0.04	16.35	0.01	2.055	10.32	0.69	8.4	91.4	0.2	-1.49	2.29	0.80	0.87	2.37	129926	6884	48	3479	210	0	0	logfile

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