Table showing results for December 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6N7W	0365	2022-12-18	2018-11-28	4.5	4.41	—	4.1	0.006	0.79	0.0	0.05	19.17	0.02	2.125	3.23	0.46	4.4	95.5	0.1	-2.55	0.85	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7837	808	5	70	2	0	0	logfile
✔	6N9U	0379	2022-12-12	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.05	12.73	0.01	2.205	3.72	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.003	0.60	0.0	0.04	16.48	0.00	1.970	6.80	0.23	4.1	95.9	0.0	-1.50	1.14	0.77	0.83	1.96	8822	1063	7	18	4	0	0	logfile
✘	6N9V	0380	2022-12-18	2018-12-04	4.0	4.06	—	4.0	0.005	0.82	0.0	0.05	13.72	0.01	2.125	2.67	0.41	3.8	96.2	0.0	-4.08	0.76	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21526	2651	15	33	14	0	0	logfile
✔	6N9W	0381	2022-12-14	2018-12-04	4.0	4.51	—	4.2	0.005	0.76	0.0	0.05	13.64	0.00	2.082	3.10	0.10	3.4	96.6	0.0	-3.98	0.78	0.79	—	4.2	0.003	0.75	0.0	0.04	16.63	0.00	1.862	14.40	0.35	4.0	96.0	0.0	-0.83	1.33	0.80	0.82	—	19576	2410	15	30	12	0	0	logfile
✔	6N9X	0382	2022-12-14	2018-12-04	4.1	4.18	—	4.1	0.006	0.84	0.0	0.05	13.69	0.02	2.131	3.73	0.60	3.9	96.1	0.0	-4.04	0.74	0.78	—	4.1	0.005	0.71	0.0	0.05	14.71	0.00	1.865	10.22	0.00	6.0	94.0	0.0	-0.96	1.31	0.77	0.82	—	19658	2419	14	31	12	0	0	logfile
✔	6N9Y	0383	2022-12-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	5.13	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	14.28	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.78	—	4527	552	1	0	0	0	0	logfile
✔	6NAV	0397	2022-12-14	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6NB3	0401	2022-12-16	2018-12-06	3.5	3.78	—	3.7	0.014	1.35	3.0	0.08	10.77	0.01	2.139	1.27	0.41	2.7	97.1	0.2	0.07	0.77	0.74	2.09	3.7	0.004	0.70	0.0	0.04	13.96	0.00	2.106	8.38	0.25	4.1	95.9	0.0	-0.22	1.61	0.79	0.79	2.03	30960	3757	54	0	160	0	0	logfile
✔	6NB4	0402	2022-12-15	2018-12-06	3.6	3.72	—	3.7	0.015	1.31	4.0	0.08	10.74	0.01	1.986	1.31	0.45	2.6	97.1	0.2	0.04	0.77	0.74	2.29	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.140	6.69	0.34	4.1	95.9	0.0	0.00	1.59	0.81	0.80	1.91	26681	3315	46	0	113	0	0	logfile
✔	6NB6	0403	2022-12-15	2018-12-06	4.2	4.51	—	4.3	0.016	1.44	4.0	0.10	9.81	0.01	2.264	1.21	0.42	3.3	96.4	0.2	0.22	0.81	0.76	—	4.3	0.003	0.68	0.0	0.05	11.18	0.00	2.122	6.05	0.00	4.0	96.0	0.0	0.36	0.70	0.83	0.80	—	25783	3599	48	0	149	0	0	logfile
✔	6NB7	0404	2022-12-15	2018-12-06	4.5	4.89	—	4.6	0.015	1.44	1.0	0.09	9.14	0.01	2.330	0.87	0.97	3.2	96.6	0.2	0.24	0.80	0.71	—	4.6	0.003	0.69	0.0	0.05	10.21	0.00	2.166	7.36	0.00	4.8	95.2	0.0	-0.20	0.83	0.83	0.78	—	24718	3828	49	0	137	0	0	logfile
✔	6NBF	0410	2022-12-12	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.34	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.004	0.62	0.0	0.04	14.15	0.00	2.085	7.84	2.34	2.1	97.9	0.0	0.57	1.20	0.54	0.76	2.66	9424	1148	7	0	10	0	0	logfile
✔	6NBH	0411	2022-12-12	2018-12-07	3.5	4.06	—	4.0	0.005	0.86	0.0	0.05	8.34	0.00	2.357	1.89	0.20	2.6	97.4	0.0	-1.51	0.62	0.76	1.73	4.0	0.003	0.73	0.0	0.04	15.83	0.00	2.213	12.14	0.51	3.2	96.8	0.0	0.55	1.42	0.59	0.76	1.46	9502	1159	7	0	10	0	0	logfile
✔	6NBi	0412	2022-12-12	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.46	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.83	0.0	0.04	15.90	0.00	2.147	18.75	1.03	2.4	97.6	0.0	-0.14	2.54	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile
✘	6NC3	0434	2022-12-20	2018-12-10	4.5	5.02	4.53	4.5	0.019	1.79	0.0	0.11	10.64	0.01	2.381	1.18	0.15	3.1	96.5	0.4	0.08	0.77	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38904	4686	72	0	162	0	0	logfile
✔	6NCV	0438	2022-12-13	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.004	0.73	0.0	0.04	18.50	0.00	2.089	7.10	0.98	6.2	93.8	0.0	-0.22	1.69	0.74	0.85	1.18	15456	1911	21	0	0	0	0	logfile
✔	6ND0	0439	2022-12-14	2018-12-13	3.5	3.65	—	3.6	0.008	0.94	0.0	0.06	10.80	0.01	2.178	5.17	0.43	7.8	92.0	0.2	-4.62	0.60	0.75	3.00	3.6	0.004	0.70	1.0	0.05	14.68	0.00	2.122	11.06	0.31	7.3	92.6	0.1	-1.45	0.83	0.68	0.81	2.52	22964	2908	4	0	0	0	0	logfile
✔	6ND1	0440	2022-12-12	2018-12-13	4.1	4.15	—	4.1	0.009	1.23	14.0	0.08	16.24	0.01	2.249	7.63	0.10	3.7	96.2	0.2	-3.89	0.60	0.82	—	4.1	0.003	0.70	0.0	0.04	14.75	0.00	2.085	7.69	0.00	3.6	96.4	0.0	0.48	0.70	0.59	0.81	—	9186	1179	6	0	0	0	0	logfile
✔	6ND4	0441	2022-12-13	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.45	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.005	0.98	0.0	0.05	14.49	0.01	1.990	15.99	0.00	13.0	86.9	0.0	-3.07	1.09	0.84	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6NDY	0443	2022-12-12	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.12	0.00	0.904	12.53	0.52	5.7	94.3	0.0	-0.23	1.31	0.79	0.80	1.03	12531	1596	11	0	20	0	0	logfile

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