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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6N7W | 0365 | 2022-12-18 | 2018-11-28 | 4.5 | 4.41 | — | 4.1 | 0.006 | 0.79 | 0.0 | 0.05 | 19.17 | 0.02 | 2.125 | 3.23 | 0.46 | 4.4 | 95.5 | 0.1 | -2.55 | 0.85 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7837 | 808 | 5 | 70 | 2 | 0 | 0 | logfile |
✔ | 6N9U | 0379 | 2022-12-12 | 2018-12-04 | 3.7 | 3.80 | — | 3.7 | 0.007 | 0.84 | 0.0 | 0.05 | 12.73 | 0.01 | 2.205 | 3.72 | 0.34 | 5.3 | 94.7 | 0.0 | -4.67 | 0.75 | 0.82 | 3.31 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 16.48 | 0.00 | 1.970 | 6.80 | 0.23 | 4.1 | 95.9 | 0.0 | -1.50 | 1.14 | 0.77 | 0.83 | 1.96 | 8822 | 1063 | 7 | 18 | 4 | 0 | 0 | logfile |
✘ | 6N9V | 0380 | 2022-12-18 | 2018-12-04 | 4.0 | 4.06 | — | 4.0 | 0.005 | 0.82 | 0.0 | 0.05 | 13.72 | 0.01 | 2.125 | 2.67 | 0.41 | 3.8 | 96.2 | 0.0 | -4.08 | 0.76 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21526 | 2651 | 15 | 33 | 14 | 0 | 0 | logfile |
✔ | 6N9W | 0381 | 2022-12-14 | 2018-12-04 | 4.0 | 4.51 | — | 4.2 | 0.005 | 0.76 | 0.0 | 0.05 | 13.64 | 0.00 | 2.082 | 3.10 | 0.10 | 3.4 | 96.6 | 0.0 | -3.98 | 0.78 | 0.79 | — | 4.2 | 0.003 | 0.75 | 0.0 | 0.04 | 16.63 | 0.00 | 1.862 | 14.40 | 0.35 | 4.0 | 96.0 | 0.0 | -0.83 | 1.33 | 0.80 | 0.82 | — | 19576 | 2410 | 15 | 30 | 12 | 0 | 0 | logfile |
✔ | 6N9X | 0382 | 2022-12-14 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 2.131 | 3.73 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | 4.1 | 0.005 | 0.71 | 0.0 | 0.05 | 14.71 | 0.00 | 1.865 | 10.22 | 0.00 | 6.0 | 94.0 | 0.0 | -0.96 | 1.31 | 0.77 | 0.82 | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2022-12-11 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 5.13 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 15.57 | 0.00 | 2.155 | 14.28 | 0.00 | 8.9 | 91.1 | 0.0 | -1.04 | 1.76 | 0.40 | 0.78 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NAV | 0397 | 2022-12-14 | 2018-12-06 | 4.1 | 4.14 | — | 4.1 | 0.005 | 0.82 | 0.0 | 0.06 | 8.77 | 0.00 | 2.245 | 4.10 | 0.00 | 4.7 | 95.3 | 0.0 | -2.96 | 0.62 | 0.82 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 11.67 | 0.00 | 2.145 | 7.83 | 0.00 | 6.1 | 93.9 | 0.0 | -0.50 | 1.54 | 0.63 | 0.84 | — | 18711 | 2751 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NB3 | 0401 | 2022-12-16 | 2018-12-06 | 3.5 | 3.78 | — | 3.7 | 0.014 | 1.35 | 3.0 | 0.08 | 10.77 | 0.01 | 2.139 | 1.27 | 0.41 | 2.7 | 97.1 | 0.2 | 0.07 | 0.77 | 0.74 | 2.09 | 3.7 | 0.004 | 0.70 | 0.0 | 0.04 | 13.96 | 0.00 | 2.106 | 8.38 | 0.25 | 4.1 | 95.9 | 0.0 | -0.22 | 1.61 | 0.79 | 0.79 | 2.03 | 30960 | 3757 | 54 | 0 | 160 | 0 | 0 | logfile |
✔ | 6NB4 | 0402 | 2022-12-15 | 2018-12-06 | 3.6 | 3.72 | — | 3.7 | 0.015 | 1.31 | 4.0 | 0.08 | 10.74 | 0.01 | 1.986 | 1.31 | 0.45 | 2.6 | 97.1 | 0.2 | 0.04 | 0.77 | 0.74 | 2.29 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.10 | 0.00 | 2.140 | 6.69 | 0.34 | 4.1 | 95.9 | 0.0 | 0.00 | 1.59 | 0.81 | 0.80 | 1.91 | 26681 | 3315 | 46 | 0 | 113 | 0 | 0 | logfile |
✔ | 6NB6 | 0403 | 2022-12-15 | 2018-12-06 | 4.2 | 4.51 | — | 4.3 | 0.016 | 1.44 | 4.0 | 0.10 | 9.81 | 0.01 | 2.264 | 1.21 | 0.42 | 3.3 | 96.4 | 0.2 | 0.22 | 0.81 | 0.76 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.05 | 11.18 | 0.00 | 2.122 | 6.05 | 0.00 | 4.0 | 96.0 | 0.0 | 0.36 | 0.70 | 0.83 | 0.80 | — | 25783 | 3599 | 48 | 0 | 149 | 0 | 0 | logfile |
✔ | 6NB7 | 0404 | 2022-12-15 | 2018-12-06 | 4.5 | 4.89 | — | 4.6 | 0.015 | 1.44 | 1.0 | 0.09 | 9.14 | 0.01 | 2.330 | 0.87 | 0.97 | 3.2 | 96.6 | 0.2 | 0.24 | 0.80 | 0.71 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.05 | 10.21 | 0.00 | 2.166 | 7.36 | 0.00 | 4.8 | 95.2 | 0.0 | -0.20 | 0.83 | 0.83 | 0.78 | — | 24718 | 3828 | 49 | 0 | 137 | 0 | 0 | logfile |
✔ | 6NBF | 0410 | 2022-12-12 | 2018-12-07 | 3.0 | 3.52 | — | 3.5 | 0.005 | 0.90 | 0.0 | 0.06 | 8.85 | 0.01 | 2.307 | 3.34 | 0.10 | 3.0 | 97.0 | 0.0 | -1.40 | 0.64 | 0.79 | 3.11 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 14.15 | 0.00 | 2.085 | 7.84 | 2.34 | 2.1 | 97.9 | 0.0 | 0.57 | 1.20 | 0.54 | 0.76 | 2.66 | 9424 | 1148 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBH | 0411 | 2022-12-12 | 2018-12-07 | 3.5 | 4.06 | — | 4.0 | 0.005 | 0.86 | 0.0 | 0.05 | 8.34 | 0.00 | 2.357 | 1.89 | 0.20 | 2.6 | 97.4 | 0.0 | -1.51 | 0.62 | 0.76 | 1.73 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 15.83 | 0.00 | 2.213 | 12.14 | 0.51 | 3.2 | 96.8 | 0.0 | 0.55 | 1.42 | 0.59 | 0.76 | 1.46 | 9502 | 1159 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2022-12-12 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.85 | 0.00 | 2.337 | 2.46 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.83 | 0.0 | 0.04 | 15.90 | 0.00 | 2.147 | 18.75 | 1.03 | 2.4 | 97.6 | 0.0 | -0.14 | 2.54 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✘ | 6NC3 | 0434 | 2022-12-20 | 2018-12-10 | 4.5 | 5.02 | 4.53 | 4.5 | 0.019 | 1.79 | 0.0 | 0.11 | 10.64 | 0.01 | 2.381 | 1.18 | 0.15 | 3.1 | 96.5 | 0.4 | 0.08 | 0.77 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38904 | 4686 | 72 | 0 | 162 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2022-12-13 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 18.50 | 0.00 | 2.089 | 7.10 | 0.98 | 6.2 | 93.8 | 0.0 | -0.22 | 1.69 | 0.74 | 0.85 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND0 | 0439 | 2022-12-14 | 2018-12-13 | 3.5 | 3.65 | — | 3.6 | 0.008 | 0.94 | 0.0 | 0.06 | 10.80 | 0.01 | 2.178 | 5.17 | 0.43 | 7.8 | 92.0 | 0.2 | -4.62 | 0.60 | 0.75 | 3.00 | 3.6 | 0.004 | 0.70 | 1.0 | 0.05 | 14.68 | 0.00 | 2.122 | 11.06 | 0.31 | 7.3 | 92.6 | 0.1 | -1.45 | 0.83 | 0.68 | 0.81 | 2.52 | 22964 | 2908 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND1 | 0440 | 2022-12-12 | 2018-12-13 | 4.1 | 4.15 | — | 4.1 | 0.009 | 1.23 | 14.0 | 0.08 | 16.24 | 0.01 | 2.249 | 7.63 | 0.10 | 3.7 | 96.2 | 0.2 | -3.89 | 0.60 | 0.82 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 14.75 | 0.00 | 2.085 | 7.69 | 0.00 | 3.6 | 96.4 | 0.0 | 0.48 | 0.70 | 0.59 | 0.81 | — | 9186 | 1179 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ND4 | 0441 | 2022-12-13 | 2018-12-13 | 4.3 | 4.41 | — | 4.2 | 0.010 | 1.03 | 0.0 | 0.06 | 14.45 | 0.02 | 2.230 | 5.19 | 0.00 | 6.4 | 93.6 | 0.1 | -3.63 | 0.80 | 0.66 | — | 4.2 | 0.005 | 0.98 | 0.0 | 0.05 | 14.49 | 0.01 | 1.990 | 15.99 | 0.00 | 13.0 | 86.9 | 0.0 | -3.07 | 1.09 | 0.84 | 0.77 | — | 63993 | 9225 | 30 | 551 | 1306 | 0 | 0 | logfile |
✔ | 6NDY | 0443 | 2022-12-12 | 2018-12-14 | 3.6 | 3.70 | — | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.71 | 0.01 | 2.037 | 4.67 | 0.00 | 5.9 | 94.1 | 0.0 | -3.78 | 0.66 | 0.54 | 0.23 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 16.12 | 0.00 | 0.904 | 12.53 | 0.52 | 5.7 | 94.3 | 0.0 | -0.23 | 1.31 | 0.79 | 0.80 | 1.03 | 12531 | 1596 | 11 | 0 | 20 | 0 | 0 | logfile |