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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6NT5 | 0502 | 2023-04-20 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NT6 | 0503 | 2023-04-20 | 2019-01-28 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 11.99 | 0.01 | 2.316 | 3.70 | 0.00 | 3.8 | 96.2 | 0.0 | -3.32 | 0.69 | 0.80 | — | 4.1 | 0.002 | 0.72 | 0.0 | 0.04 | 15.61 | 0.00 | 2.295 | 7.27 | 0.00 | 2.7 | 97.3 | 0.0 | 1.43 | 1.19 | 0.69 | 0.80 | — | 4198 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NT7 | 0504 | 2023-04-20 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.008 | 0.90 | 0.0 | 0.05 | 14.16 | 0.01 | 2.238 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NT9 | 0506 | 2023-04-21 | 2019-01-28 | 3.3 | 3.42 | — | 3.3 | 0.010 | 0.89 | 0.0 | 0.06 | 9.66 | 0.01 | 2.250 | 1.52 | 0.18 | 3.5 | 96.5 | 0.0 | -2.03 | 0.81 | 0.86 | 3.98 | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 14.15 | 0.00 | 2.226 | 4.50 | 0.18 | 1.8 | 98.2 | 0.0 | 2.60 | 0.58 | 0.83 | 0.88 | 3.12 | 9906 | 1228 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2023-04-21 | 2019-01-30 | 3.63 | 4.31 | 2.98 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.23 | 0.00 | 1.917 | 2.06 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.6 | 0.002 | 0.62 | 0.0 | 0.04 | 15.01 | 0.00 | 2.074 | 8.23 | 0.00 | 2.2 | 97.8 | 0.0 | 0.88 | 2.31 | 0.92 | 0.85 | 1.06 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6NUD | 0516 | 2023-04-25 | 2019-01-31 | 3.5 | 3.80 | — | 3.7 | 0.002 | 0.43 | 0.0 | 0.03 | 11.76 | 0.00 | 2.290 | 4.84 | 0.29 | 15.0 | 83.5 | 1.5 | -5.22 | 0.53 | 0.46 | 0.65 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 16.71 | 0.00 | 2.146 | 15.03 | 0.24 | 10.1 | 89.9 | 0.0 | -2.41 | 2.02 | 0.73 | 0.76 | 1.77 | 20831 | 2420 | 13 | 68 | 1 | 0 | 0 | logfile |
✔ | 6NUR | 0520 | 2023-04-20 | 2019-02-01 | 3.1 | 3.25 | 3.17 | 3.3 | 0.016 | 1.55 | 0.0 | 0.09 | 10.59 | 0.01 | 2.270 | 2.28 | 0.52 | 1.4 | 98.6 | 0.0 | -0.12 | 0.64 | 0.81 | 4.19 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.69 | 0.00 | 2.150 | 6.19 | 0.31 | 2.0 | 98.0 | 0.0 | 0.61 | 0.72 | 0.57 | 0.82 | 3.06 | 8647 | 1087 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NUS | 0521 | 2023-04-20 | 2019-02-01 | 3.5 | 3.62 | 3.47 | 3.6 | 0.016 | 1.57 | 0.0 | 0.09 | 9.78 | 0.01 | 2.301 | 0.99 | 0.14 | 1.2 | 98.8 | 0.0 | 0.30 | 0.56 | 0.68 | 2.07 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.69 | 0.00 | 2.202 | 11.22 | 0.69 | 2.6 | 97.4 | 0.0 | 0.73 | 1.87 | 0.53 | 0.71 | 0.89 | 6632 | 827 | 3 | 0 | 2 | 0 | 0 | logfile |
✔ | 6NUW | 0523 | 2023-04-23 | 2019-02-03 | 4.25 | 4.40 | — | 4.2 | 0.012 | 1.45 | 1.0 | 0.07 | 14.25 | 0.01 | 1.219 | 13.65 | 6.01 | 15.2 | 84.0 | 0.8 | -4.70 | 0.79 | 0.78 | — | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 13.33 | 0.01 | 2.180 | 16.87 | 0.15 | 12.0 | 87.8 | 0.1 | -0.88 | 0.81 | 0.78 | 0.76 | — | 16292 | 2099 | 13 | 0 | 261 | 0 | 0 | logfile |
✔ | 6NYB | 0541 | 2023-04-21 | 2019-02-11 | 4.1 | 4.15 | — | 4.0 | 0.014 | 1.76 | 3.0 | 0.09 | 14.33 | 0.00 | 2.070 | 6.97 | 3.66 | 5.4 | 94.4 | 0.2 | -3.02 | 0.75 | 0.74 | — | 4.0 | 0.005 | 0.80 | 0.0 | 0.04 | 13.88 | 0.00 | 1.864 | 12.75 | 0.00 | 4.2 | 95.8 | 0.0 | 0.25 | 2.59 | 0.79 | 0.80 | — | 8842 | 1097 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NYG | 0543 | 2023-04-26 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.18 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.61 | 0.00 | 2.093 | 18.96 | 0.18 | 11.3 | 88.7 | 0.0 | -3.94 | 1.29 | 0.83 | 0.68 | 0.96 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-04-26 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2023-04-26 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 12.87 | 0.00 | 2.133 | 25.47 | 0.31 | 20.1 | 79.9 | 0.0 | -4.78 | 0.53 | 0.87 | 0.74 | 1.84 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2023-04-26 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.007 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.133 | 18.95 | 0.35 | 20.3 | 79.7 | 0.0 | -4.50 | 1.20 | 0.88 | 0.80 | 2.49 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYN | 0547 | 2023-04-26 | 2019-02-11 | 3.5 | 4.40 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.55 | 0.01 | 2.259 | 7.62 | 0.97 | 16.7 | 83.3 | 0.0 | -5.19 | 0.87 | 0.77 | 2.69 | 4.1 | 0.004 | 0.71 | 0.0 | 0.05 | 12.57 | 0.00 | 2.163 | 16.36 | 0.20 | 17.0 | 83.0 | 0.0 | -4.58 | 0.51 | 0.88 | 0.79 | 2.29 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYY | 0552 | 2023-04-25 | 2019-02-12 | 3.0 | 2.29 | 2.98 | 3.1 | 0.007 | 0.90 | 0.0 | 0.05 | 10.08 | 0.01 | 0.952 | 5.97 | 0.05 | 5.9 | 94.1 | 0.0 | -5.40 | 0.70 | 0.66 | 3.17 | 3.1 | 0.004 | 0.69 | 0.0 | 0.04 | 16.20 | 0.00 | 1.955 | 10.08 | 2.19 | 4.6 | 95.4 | 0.0 | -0.51 | 1.37 | 0.76 | 0.74 | 2.52 | 19226 | 2894 | 16 | 0 | 13 | 0 | 0 | logfile |
✔ | 6NZK | 0557 | 2023-04-29 | 2019-02-13 | 2.8 | 2.92 | — | 2.9 | 0.025 | 1.83 | 0.0 | 0.12 | 10.38 | 0.01 | 2.033 | 0.97 | 0.39 | 1.6 | 98.3 | 0.1 | 0.52 | 0.79 | 0.85 | 4.94 | 2.9 | 0.005 | 0.68 | 0.0 | 0.05 | 14.76 | 0.00 | 2.122 | 7.27 | 1.57 | 3.0 | 97.0 | 0.0 | 0.22 | 1.18 | 0.78 | 0.86 | 4.48 | 29268 | 3525 | 39 | 0 | 105 | 396 | 0 | logfile |
✔ | 6NZo | 0559 | 2023-04-22 | 2019-02-14 | 3.8 | 4.12 | — | 4.0 | 0.007 | 0.93 | 0.0 | 0.06 | 27.12 | 0.01 | 2.313 | 3.45 | 0.12 | 4.8 | 95.1 | 0.1 | -1.08 | 0.78 | 0.76 | 1.27 | 4.0 | 0.004 | 0.65 | 0.0 | 0.04 | 27.94 | 0.00 | 2.132 | 15.87 | 0.12 | 5.2 | 94.8 | 0.0 | 0.96 | 1.62 | 0.79 | 0.77 | 0.56 | 13738 | 985 | 11 | 290 | 3 | 0 | 0 | logfile |
✔ | 6NZU | 0560 | 2023-04-26 | 2019-02-14 | 3.2 | 3.33 | 3.22 | 3.3 | 0.014 | 0.88 | 0.0 | 0.06 | 14.42 | 0.01 | 2.057 | 2.18 | 0.00 | 7.3 | 92.7 | 0.0 | -5.92 | 0.71 | 0.84 | 3.98 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 15.90 | 0.00 | 2.232 | 6.86 | 0.22 | 5.0 | 95.0 | 0.0 | -1.59 | 0.55 | 0.70 | 0.84 | 3.12 | 12570 | 1588 | 16 | 0 | 6 | 0 | 0 | logfile |
✔ | 6o0X | 0583 | 2023-04-22 | 2019-02-17 | 3.28 | 3.97 | — | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 16.67 | 0.01 | 2.317 | 2.61 | 0.14 | 6.2 | 93.8 | 0.0 | -4.06 | 0.85 | 0.88 | 2.75 | 3.6 | 0.003 | 0.53 | 0.0 | 0.04 | 17.31 | 0.00 | 2.240 | 5.95 | 0.43 | 5.2 | 94.8 | 0.0 | -0.10 | 0.89 | 0.84 | 0.87 | 2.70 | 11257 | 1112 | 5 | 150 | 0 | 0 | 0 | logfile |