Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6LML	0918	2023-09-29	2019-12-26	3.9	4.02	—	3.9	0.006	0.96	0.0	0.06	15.40	0.01	2.260	7.25	0.51	8.8	91.2	0.0	-5.53	0.69	0.80	1.70	3.9	0.003	0.69	0.0	0.04	16.55	0.00	2.129	13.32	0.51	6.9	93.1	0.0	-2.01	1.05	0.69	0.79	0.98	9438	1219	6	0	0	0	0	logfile
✔	6LMW	0922	2023-09-30	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.002	0.63	0.0	0.04	16.35	0.00	2.228	5.83	1.18	1.1	98.9	0.0	2.21	0.44	0.66	0.83	2.32	11624	1472	8	0	0	0	0	logfile
✔	6LN5	0924	2023-09-28	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.63	0.0	0.04	12.32	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.002	0.53	0.0	0.04	16.29	0.00	2.241	5.89	1.97	1.7	98.3	0.0	0.73	1.33	0.68	0.85	3.01	7840	1011	1	0	4	0	0	logfile
✔	6LN6	0925	2023-09-28	2019-12-28	2.9	3.03	2.87	3.0	0.005	0.64	0.0	0.04	11.98	0.00	2.035	6.53	0.00	2.0	98.0	0.0	-3.94	0.65	0.82	3.55	3.0	0.002	0.51	0.0	0.04	15.73	0.00	2.055	7.86	1.74	1.4	98.6	0.0	0.61	1.33	0.65	0.83	3.33	7836	1010	1	0	4	0	0	logfile
✔	6LN7	0926	2023-09-28	2019-12-28	2.8	2.90	2.71	2.9	0.005	0.65	0.0	0.04	11.73	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.005	0.63	0.0	0.04	16.72	0.00	2.175	6.97	1.27	2.2	97.8	0.0	0.29	0.47	0.69	0.86	2.97	7840	1011	1	0	4	0	0	logfile
✔	6LN8	0927	2023-09-28	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.003	0.54	0.0	0.04	15.08	0.00	1.381	9.56	0.12	3.1	96.9	0.0	0.11	0.48	0.69	0.82	1.70	7739	1003	1	0	2	0	0	logfile
✔	6LN9	0928	2023-09-28	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.72	0.00	1.333	10.18	0.00	4.3	95.7	0.0	-0.24	0.52	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	6LNi	0931	2023-09-28	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	6Lo8	0935	2023-09-28	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.004	0.83	0.0	0.04	17.18	0.00	2.116	14.07	0.57	5.0	95.0	0.0	1.41	0.93	0.66	0.79	1.78	7972	997	10	0	0	0	0	logfile
✘	6LQA	0942	2023-09-29	2020-01-13	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	6LQG	0944	2023-09-30	2020-01-13	3.1	3.24	—	3.2	0.007	1.08	0.0	0.06	10.33	0.01	1.552	3.77	0.27	5.0	95.0	0.0	-3.57	0.65	0.84	3.55	3.2	0.008	0.78	0.0	0.05	14.61	0.00	2.070	5.60	0.71	5.5	94.5	0.0	-0.20	1.20	0.64	0.87	2.88	10855	1315	13	0	27	0	0	logfile
✔	6LR4	0957	2023-09-30	2020-01-15	3.0	3.16	—	3.1	0.011	1.00	0.0	0.06	10.34	0.01	2.289	2.99	0.09	5.8	94.2	0.0	-3.96	0.64	0.84	4.36	3.1	0.005	0.68	0.0	0.04	15.05	0.00	2.185	5.33	1.95	5.3	94.7	0.0	0.02	0.54	0.67	0.87	2.81	10838	1314	13	0	27	0	0	logfile
✔	6LRQ	0958	2023-09-27	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.003	0.70	0.0	0.05	15.02	0.00	2.237	12.85	0.37	8.2	91.8	0.0	-2.72	0.95	0.45	0.69	1.94	2628	378	6	0	0	0	0	logfile
✔	6RVX	10016	2023-09-29	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.003	0.69	0.0	0.04	15.28	0.00	2.179	9.45	0.39	4.5	95.5	0.0	-0.63	1.14	0.63	0.79	0.97	9627	1290	3	0	0	0	0	logfile
✔	6RVY	10018	2023-09-29	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.74	0.0	0.04	13.23	0.00	2.369	10.92	0.00	5.0	95.0	0.0	-0.04	0.72	0.64	0.80	—	9627	1290	3	0	0	0	0	logfile
✔	6RWE	10038	2023-09-27	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.004	0.82	0.0	0.05	18.58	0.00	1.992	14.06	2.87	6.5	93.5	0.0	-1.41	2.49	0.76	0.80	1.68	53719	6454	26	95	8	0	0	logfile
✘	6RX4	10049	2023-09-28	2019-06-07	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✔	6S3K	10092	2023-09-29	2019-06-25	3.7	4.09	3.85	4.1	0.008	1.12	0.0	0.06	15.38	0.01	2.276	5.87	0.62	10.7	89.3	0.0	-4.54	0.57	0.75	0.73	4.1	0.003	0.73	0.0	0.04	16.96	0.00	2.264	10.86	0.31	7.4	92.6	0.0	0.48	1.25	0.57	0.72	0.73	8902	1146	4	0	6	0	0	logfile
✔	6S3Q	10094	2023-09-30	2019-06-25	3.34	3.45	3.28	3.4	0.012	1.11	0.0	0.06	13.97	0.01	2.383	2.50	0.57	4.3	95.4	0.2	-4.53	0.66	0.86	2.79	3.4	0.003	0.61	0.0	0.04	15.10	0.00	2.273	5.05	0.00	1.9	98.1	0.0	1.38	1.15	0.62	0.84	1.62	10290	1290	6	0	21	0	0	logfile
✘	6S5T	10100	2023-09-28	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.08	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6958	896	3	0	1	0	0	logfile

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