Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NDY	0443	2023-08-12	2018-12-14	3.6	3.70	—	3.6	0.005	0.89	0.0	0.05	14.71	0.01	2.037	4.67	0.00	5.9	94.1	0.0	-3.78	0.66	0.54	0.23	3.6	0.003	0.72	0.0	0.04	16.31	0.00	0.894	11.65	0.52	5.9	94.1	0.0	-0.22	1.30	0.79	0.80	0.84	12531	1596	11	0	20	0	0	logfile
✔	6NMA	0445	2023-08-12	2019-01-10	3.38	3.71	—	3.7	0.009	0.78	0.0	0.05	15.30	0.00	1.973	10.70	8.09	11.0	89.0	0.1	-4.94	0.65	0.78	2.70	3.7	0.003	0.60	0.0	0.04	16.44	0.00	2.189	8.70	0.46	8.0	92.0	0.0	-1.40	1.18	0.66	0.79	1.78	12404	1435	6	25	2	0	0	logfile
✔	6NMC	0446	2023-08-12	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.005	0.77	0.0	0.04	14.53	0.00	1.850	22.51	0.07	8.7	91.3	0.0	-1.07	1.84	0.89	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	6NMD	0447	2023-08-12	2019-01-10	3.49	3.91	—	4.0	0.013	1.11	5.0	0.07	16.81	0.01	2.014	16.61	2.43	10.7	88.9	0.4	-4.62	0.55	0.46	0.29	3.9	0.003	0.76	0.0	0.04	18.13	0.00	1.939	13.02	0.41	6.3	93.7	0.0	-1.44	1.84	0.73	0.78	1.29	11779	1358	7	25	2	6	0	logfile
✔	6NMi	0452	2023-08-18	2019-01-10	3.7	3.82	3.78	3.8	0.008	1.13	0.0	0.06	9.85	0.01	2.240	6.06	0.16	10.6	89.2	0.2	-4.24	0.71	0.76	1.90	3.8	0.003	0.71	0.0	0.04	15.79	0.00	2.109	13.10	0.40	6.8	93.1	0.0	-0.84	0.90	0.72	0.77	1.14	24379	2908	12	0	277	0	0	logfile
✔	6o1o	0454	2023-08-14	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	15.00	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.013	1.77	0.0	0.07	13.79	0.00	1.993	31.58	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6NN6	0458	2023-08-13	2019-01-14	3.9	3.97	—	3.8	0.010	1.02	0.0	0.05	25.83	0.01	2.144	9.01	0.81	3.8	96.0	0.2	-5.04	0.83	0.80	2.90	3.8	0.003	0.63	0.0	0.04	26.56	0.00	2.077	11.67	0.61	3.5	96.5	0.0	0.41	1.77	0.82	0.78	1.35	15125	1149	12	290	0	0	0	logfile
✔	6NoG	0468	2023-08-16	2019-01-16	3.9	4.05	4.50	3.9	0.009	1.12	1.0	0.06	26.55	0.01	2.239	6.27	0.84	4.1	95.9	0.0	-1.83	0.84	0.81	0.53	3.9	0.004	0.63	0.0	0.03	26.62	0.00	2.153	11.24	0.32	2.2	97.8	0.0	1.84	1.76	0.86	0.85	0.51	14929	1124	12	292	0	0	0	logfile
✔	6NP0	0469	2023-08-14	2019-01-17	2.92	3.16	3.01	3.1	0.011	1.29	0.0	0.08	10.43	0.01	2.270	3.63	0.55	5.2	94.8	0.0	-3.90	0.69	0.72	2.76	3.1	0.003	0.65	0.0	0.04	14.69	0.00	2.224	5.64	3.29	2.7	97.3	0.0	0.36	0.84	0.79	0.85	2.73	16891	1975	20	0	41	0	0	logfile
✔	6NPH	0470	2023-08-10	2019-01-17	2.9	3.11	—	3.2	0.012	1.42	0.0	0.06	17.82	0.01	2.292	5.02	4.67	7.9	92.1	0.0	-4.29	0.53	0.71	1.66	3.2	0.004	0.66	0.0	0.04	17.40	0.00	2.224	6.39	2.27	6.8	93.2	0.0	-0.33	0.92	0.59	0.84	2.98	7504	944	4	0	13	0	0	logfile
✔	6NPJ	0471	2023-08-09	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.71	0.0	0.04	17.43	0.00	2.278	10.04	0.30	6.1	93.9	0.0	-2.01	0.85	0.63	0.78	2.22	6186	768	2	0	0	0	0	logfile
✔	6NPK	0472	2023-08-10	2019-01-17	3.6	3.66	—	3.6	0.004	0.82	0.0	0.05	13.02	0.01	2.320	3.89	6.13	6.6	93.4	0.0	-5.05	0.58	0.80	2.02	3.7	0.003	0.61	0.0	0.04	14.36	0.00	2.173	9.10	0.27	6.3	93.7	0.0	0.11	1.23	0.61	0.81	2.02	7134	944	2	0	0	0	0	logfile
✔	6NPL	0473	2023-08-13	2019-01-17	2.9	2.52	—	3.0	0.009	1.18	0.0	0.05	16.97	0.01	2.264	4.08	7.67	8.5	91.5	0.1	-4.62	0.70	0.70	1.19	3.0	0.003	0.76	0.0	0.04	16.90	0.00	2.232	10.59	3.14	7.2	92.8	0.0	-0.50	1.03	0.78	0.86	2.48	13774	1722	4	0	13	0	0	logfile
✔	6NPY	0476	2023-08-10	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.91	0.0	0.05	17.24	0.00	2.196	17.36	0.60	10.2	89.8	0.0	-2.29	1.10	0.78	0.70	0.72	7586	965	3	0	1	0	0	logfile
✘	6NQ0	0477	2023-08-11	2019-01-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	6NQ1	0478	2023-08-11	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.003	0.70	0.0	0.04	15.93	0.00	2.048	9.83	0.18	5.2	94.8	0.0	0.85	1.28	0.58	0.82	1.92	10046	1242	2	0	0	0	0	logfile
✘	6NQ2	0479	2023-08-11	2019-01-18	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	6NQB	0482	2023-08-25	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	7.99	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.004	0.70	0.0	0.04	17.92	0.00	2.002	22.05	0.62	14.1	85.8	0.1	-3.13	0.75	0.87	0.79	0.51	42570	1752	17	1341	1	0	0	logfile
✔	6NQD	0485	2023-08-16	2019-01-21	3.9	3.97	—	3.9	0.012	1.40	0.0	0.09	13.92	0.01	2.213	14.68	8.15	10.9	88.3	0.8	-3.70	0.62	0.76	2.65	3.9	0.004	0.84	0.0	0.05	15.77	0.00	2.094	17.83	0.87	8.6	91.4	0.0	-1.68	1.21	0.62	0.77	1.42	20175	2403	54	0	141	0	0	logfile
✔	6NR2	0487	2023-08-18	2019-01-22	4.0	4.24	3.95	4.1	0.007	0.98	0.0	0.05	10.05	0.01	2.256	5.92	0.17	4.1	95.9	0.0	-2.86	0.68	0.81	—	4.1	0.003	0.62	0.0	0.04	14.45	0.00	2.257	7.03	0.43	4.8	95.2	0.0	1.57	1.30	0.68	0.82	—	25788	3256	8	0	188	0	0	logfile

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