Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUZ	20485	2021-01-05	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.005	0.53	0.0	0.04	18.81	0.00	0.000	7.52	0.00	2.2	97.8	0.0	0.76	0.40	0.72	0.89	4.49	11702	1230	28	72	10	340	0	logfile
✔	6VP0	21302	2021-01-05	2020-02-01	3.1	3.70	3.19	3.6	0.012	1.51	0.0	0.05	19.95	0.00	0.000	5.17	1.96	3.5	96.5	0.0	-1.11	0.58	0.77	3.02	3.6	0.003	0.56	0.0	0.04	15.88	0.00	2.338	5.51	0.00	1.5	98.5	0.0	2.31	1.38	0.59	0.78	2.69	7212	808	4	0	12	0	0	logfile
✔	6PUT	20481	2021-01-05	2019-07-18	2.9	3.22	2.97	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.002	0.50	0.0	0.04	17.74	0.00	0.000	7.95	0.00	2.2	97.8	0.0	1.27	0.91	0.66	0.87	4.04	10976	1170	28	68	8	308	0	logfile
✔	6SHT	10205	2021-01-07	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.005	0.63	0.0	0.04	15.72	0.00	0.000	5.06	0.62	1.7	97.7	0.6	4.76	1.76	0.71	0.83	3.21	37152	4176	24	0	48	1728	0	logfile
✘	5A9Z	6396	2021-01-13	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	196.22	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150547	6671	58	4527	131	0	0	logfile
✔	6PUY	20484	2021-01-05	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.97	0.0	0.06	19.53	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.61	0.0	0.04	18.46	0.00	0.000	7.32	0.00	2.8	97.2	0.0	0.66	3.97	0.66	0.87	4.08	11784	1232	28	72	10	404	0	logfile
✔	6PUW	20483	2021-01-05	2019-07-18	2.9	3.21	2.93	3.1	0.005	0.61	0.0	0.04	19.86	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.004	0.49	0.0	0.04	19.17	0.00	0.000	7.36	0.00	2.8	97.2	0.0	0.48	0.89	0.69	0.88	4.44	11116	1170	28	72	10	312	0	logfile
✔	6ZP7	11337	2021-01-06	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.67	0.0	0.11	13.30	0.00	0.792	9.93	0.04	3.9	96.1	0.0	0.12	1.74	0.81	0.82	2.21	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-01-06	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.007	0.75	0.0	0.11	13.26	0.00	0.796	12.15	0.00	4.5	95.5	0.0	-0.11	0.74	0.83	0.84	2.50	23615	2861	33	0	92	0	0	logfile
✔	5A1A	2984	2021-01-07	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.11	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.67	0.0	0.04	17.46	0.00	1.983	11.79	3.35	2.9	97.0	0.1	-0.48	0.61	0.52	0.78	4.02	33696	4088	12	0	20	776	0	logfile
✘	4V8Y	2421	2021-01-14	2013-07-20	4.3	4.35	—	4.3	0.026	1.73	246.0	0.10	19.96	0.02	0.030	35.19	23.07	10.6	82.9	6.5	-4.49	0.62	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	221288	12072	110	5354	711	0	7033	logfile
✔	6TUP	10593	2021-01-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.3	0.025	1.99	0.0	0.19	25.49	0.01	0.963	94.99	0.00	2.9	97.1	0.0	-3.02	8.44	0.56	0.60	-0.04	22400	2300	100	300	0	0	0	logfile
✔	5ooL	3842	2021-01-06	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.28	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	4.9	0.005	0.80	0.0	0.04	15.82	0.01	1.157	25.69	0.04	6.0	94.0	0.0	-0.80	2.20	0.81	0.77	1.08	98998	8198	66	1497	124	0	0	logfile
✔	6D90	7834	2021-01-14	2018-04-27	3.2	4.98	—	4.8	0.011	1.59	47.0	0.11	20.56	0.01	0.076	6.86	11.49	13.8	83.2	3.0	-5.69	0.88	0.77	0.80	4.8	0.006	0.66	0.0	0.03	16.50	0.00	1.854	12.88	0.04	5.4	94.4	0.1	-1.43	1.52	0.86	0.77	1.06	223875	12305	85	5842	0	0	0	logfile
✔	5Li4	4052	2021-01-06	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	92.06	2.94	14.2	78.7	7.1	-4.35	0.24	0.30	—	4.4	0.004	0.97	0.0	0.05	13.81	0.01	2.155	24.43	0.05	15.0	84.4	0.6	-3.64	4.65	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	6U5U	20656	2021-01-15	2019-08-28	2.8	3.79	—	3.3	0.011	1.05	0.0	0.05	15.04	0.00	0.113	30.75	0.54	8.5	91.3	0.2	-4.59	0.85	0.79	1.79	3.3	0.004	0.80	3.0	0.05	13.84	0.01	1.573	17.88	0.04	5.4	94.5	0.1	-0.63	5.37	0.84	0.77	1.62	169788	21864	24	0	24	0	0	logfile
✔	6U5W	20658	2021-01-14	2019-08-28	3.3	4.24	—	3.7	0.010	0.85	6.0	0.05	13.69	0.00	0.153	29.88	0.33	8.2	91.6	0.3	-3.64	0.90	0.85	1.93	3.7	0.004	0.73	0.0	0.04	13.42	0.00	1.721	16.48	0.00	5.2	94.8	0.0	-0.33	0.58	0.90	0.85	1.81	164892	20808	24	0	18	0	0	logfile
✔	6o9J	0661	2021-01-11	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	54.15	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.009	1.11	3.0	0.05	16.92	0.01	1.174	33.19	0.11	24.0	73.2	2.8	-4.72	2.20	0.80	0.77	0.63	142682	5731	53	4564	0	0	0	logfile
✔	6ZTN	11421	2021-01-15	2020-07-20	3.9	3.77	3.87	3.5	0.012	1.17	0.0	0.07	16.39	0.02	0.156	8.31	5.85	6.1	93.1	0.7	-2.23	0.88	0.86	1.01	3.5	0.005	0.69	0.0	0.03	15.15	0.01	1.156	14.42	0.01	4.6	95.3	0.1	-0.50	0.85	0.88	0.86	0.96	174624	8895	80	4872	489	0	0	logfile
✔	6VoC	21260	2021-01-12	2020-01-30	3.1	3.49	—	20.0	0.006	0.90	0.0	0.06	8.74	0.01	0.163	459.01	0.00	1.9	98.1	0.0	-1.94	0.19	0.06	0.07	3.2	0.021	3.00	492.0	0.15	17.70	0.01	1.369	190.59	0.04	29.4	67.4	3.1	-5.84	7.93	0.26	0.12	0.01	214200	28560	180	0	0	0	0	logfile

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