Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7A5V	11657	2023-02-23	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✘	6PUY	20484	2023-02-20	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.66	0.01	0.000	4.36	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11784	1232	28	72	10	404	0	logfile
✔	6PUT	20481	2023-02-19	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.006	0.59	0.0	0.05	20.77	0.00	0.000	8.24	1.11	1.9	98.1	0.0	0.58	0.88	0.63	0.88	4.31	10976	1170	28	68	8	308	0	logfile
✔	6PUW	20483	2023-02-20	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.85	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.73	0.00	0.000	9.02	2.15	3.4	96.6	0.0	0.49	0.38	0.69	0.90	4.23	11116	1170	28	72	10	312	0	logfile
✘	8AZT	15771	2023-02-17	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	6PUZ	20485	2023-02-20	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.86	0.0	0.05	19.70	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11702	1230	28	72	10	340	0	logfile
✔	6ZP7	11337	2023-02-24	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.004	0.76	0.0	0.11	15.26	0.00	0.792	11.28	0.36	4.2	95.8	0.0	0.03	1.34	0.82	0.84	2.13	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2023-02-24	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.01	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.73	0.0	0.11	15.06	0.00	0.789	9.67	0.28	3.5	96.5	0.0	0.24	0.67	0.82	0.84	2.09	23615	2861	33	0	92	0	0	logfile
✘	8AZS	15770	2023-02-18	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✔	7PQU	13605	2023-02-19	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.74	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.62	0.0	0.04	16.43	0.01	2.258	9.01	0.18	6.0	94.0	0.0	-0.28	0.99	0.75	0.79	2.45	10798	1312	12	0	8	14	0	logfile
✔	5Li4	4052	2023-02-23	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.03	0.0	0.05	13.74	0.01	2.093	29.26	0.00	14.4	84.4	1.2	-3.64	4.18	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7XDi	33148	2023-02-21	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.004	0.79	0.0	0.04	17.10	0.01	2.125	14.60	0.92	5.3	94.0	0.6	0.66	1.35	0.58	0.82	1.62	53669	6804	42	0	0	0	0	logfile
✔	5o09	3726	2023-02-26	2017-05-16	3.6	3.66	—	3.7	0.014	1.48	32.0	0.10	13.27	0.01	0.180	18.46	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.004	0.80	0.0	0.04	16.71	0.00	2.078	19.79	0.52	5.7	94.3	0.0	-0.59	1.63	0.61	0.76	1.22	67424	8648	40	16	0	0	0	logfile
✔	5ND1	3619	2023-02-21	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.30	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.005	0.84	0.0	0.04	18.26	0.00	2.091	15.12	0.95	9.3	90.2	0.5	-1.95	1.59	0.48	0.83	1.01	14963	1977	2	0	0	0	0	logfile
✔	6V4J	21041	2023-02-26	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.004	0.88	0.0	0.05	16.42	0.00	1.987	16.32	3.44	5.1	94.9	0.0	-1.44	1.52	0.50	0.52	1.43	20637	2697	8	0	0	0	0	logfile
✘	5UCY	8539	2023-02-25	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	6CB1	7445	2023-02-27	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.97	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.004	0.79	0.0	0.04	18.17	0.00	2.026	21.56	0.00	8.9	91.1	0.0	-1.66	2.04	0.75	0.75	—	69945	6459	42	1615	694	0	0	logfile
✔	6TA3	10421	2023-02-19	2019-10-29	3.8	4.18	—	3.9	0.024	2.45	4.0	0.08	18.76	0.01	0.317	210.72	16.02	0.8	99.2	0.0	1.86	0.67	0.49	0.26	4.0	0.004	0.87	0.0	0.05	17.69	0.01	1.221	29.86	0.58	3.4	96.6	0.0	-0.26	2.45	0.78	0.74	0.35	9491	1201	6	0	5	0	0	logfile
✔	6T61	10381	2023-02-27	2019-10-17	3.7	3.68	—	3.6	0.006	0.93	0.0	0.05	15.61	0.01	0.321	8.35	0.00	8.1	91.9	0.0	-3.35	0.50	0.77	1.47	3.6	0.005	0.79	0.0	0.05	17.85	0.01	2.080	14.33	0.80	6.7	93.3	0.0	0.53	1.64	0.52	0.79	0.81	30978	3906	18	0	0	0	0	logfile
✔	6GJ1	0009	2023-02-20	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.88	0.0	0.05	12.54	0.01	2.080	22.51	0.00	16.1	83.8	0.1	-3.64	1.21	0.85	0.77	—	13013	1638	4	0	0	0	0	logfile

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