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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUZ | 20485 | 2021-01-05 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.87 | 0.0 | 0.05 | 19.46 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.005 | 0.53 | 0.0 | 0.04 | 18.81 | 0.00 | 0.000 | 7.52 | 0.00 | 2.2 | 97.8 | 0.0 | 0.76 | 0.40 | 0.72 | 0.89 | 4.49 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 6VP0 | 21302 | 2021-01-05 | 2020-02-01 | 3.1 | 3.70 | 3.19 | 3.6 | 0.012 | 1.51 | 0.0 | 0.05 | 19.95 | 0.00 | 0.000 | 5.17 | 1.96 | 3.5 | 96.5 | 0.0 | -1.11 | 0.58 | 0.77 | 3.02 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 15.88 | 0.00 | 2.338 | 5.51 | 0.00 | 1.5 | 98.5 | 0.0 | 2.31 | 1.38 | 0.59 | 0.78 | 2.69 | 7212 | 808 | 4 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PUT | 20481 | 2021-01-05 | 2019-07-18 | 2.9 | 3.22 | 2.97 | 3.2 | 0.007 | 0.83 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.03 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.002 | 0.50 | 0.0 | 0.04 | 17.74 | 0.00 | 0.000 | 7.95 | 0.00 | 2.2 | 97.8 | 0.0 | 1.27 | 0.91 | 0.66 | 0.87 | 4.04 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6SHT | 10205 | 2021-01-07 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 10.21 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.005 | 0.63 | 0.0 | 0.04 | 15.72 | 0.00 | 0.000 | 5.06 | 0.62 | 1.7 | 97.7 | 0.6 | 4.76 | 1.76 | 0.71 | 0.83 | 3.21 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 5A9Z | 6396 | 2021-01-13 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 23.31 | 0.03 | 0.000 | 196.22 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✔ | 6PUY | 20484 | 2021-01-05 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.97 | 0.0 | 0.06 | 19.53 | 0.01 | 0.000 | 4.31 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 18.46 | 0.00 | 0.000 | 7.32 | 0.00 | 2.8 | 97.2 | 0.0 | 0.66 | 3.97 | 0.66 | 0.87 | 4.08 | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 6PUW | 20483 | 2021-01-05 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.005 | 0.61 | 0.0 | 0.04 | 19.86 | 0.00 | 0.000 | 7.60 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 19.17 | 0.00 | 0.000 | 7.36 | 0.00 | 2.8 | 97.2 | 0.0 | 0.48 | 0.89 | 0.69 | 0.88 | 4.44 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2021-01-06 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.00 | 0.008 | 15.90 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.67 | 0.0 | 0.11 | 13.30 | 0.00 | 0.792 | 9.93 | 0.04 | 3.9 | 96.1 | 0.0 | 0.12 | 1.74 | 0.81 | 0.82 | 2.21 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2021-01-06 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.00 | 0.012 | 14.01 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.007 | 0.75 | 0.0 | 0.11 | 13.26 | 0.00 | 0.796 | 12.15 | 0.00 | 4.5 | 95.5 | 0.0 | -0.11 | 0.74 | 0.83 | 0.84 | 2.50 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2021-01-07 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.11 | 0.01 | 0.020 | 13.89 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.67 | 0.0 | 0.04 | 17.46 | 0.00 | 1.983 | 11.79 | 3.35 | 2.9 | 97.0 | 0.1 | -0.48 | 0.61 | 0.52 | 0.78 | 4.02 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✘ | 4V8Y | 2421 | 2021-01-14 | 2013-07-20 | 4.3 | 4.35 | — | 4.3 | 0.026 | 1.73 | 246.0 | 0.10 | 19.96 | 0.02 | 0.030 | 35.19 | 23.07 | 10.6 | 82.9 | 6.5 | -4.49 | 0.62 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 221288 | 12072 | 110 | 5354 | 711 | 0 | 7033 | logfile |
✔ | 6TUP | 10593 | 2021-01-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.3 | 0.025 | 1.99 | 0.0 | 0.19 | 25.49 | 0.01 | 0.963 | 94.99 | 0.00 | 2.9 | 97.1 | 0.0 | -3.02 | 8.44 | 0.56 | 0.60 | -0.04 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 5ooL | 3842 | 2021-01-06 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.15 | 0.01 | 0.037 | 6.28 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | 4.9 | 0.005 | 0.80 | 0.0 | 0.04 | 15.82 | 0.01 | 1.157 | 25.69 | 0.04 | 6.0 | 94.0 | 0.0 | -0.80 | 2.20 | 0.81 | 0.77 | 1.08 | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✔ | 6D90 | 7834 | 2021-01-14 | 2018-04-27 | 3.2 | 4.98 | — | 4.8 | 0.011 | 1.59 | 47.0 | 0.11 | 20.56 | 0.01 | 0.076 | 6.86 | 11.49 | 13.8 | 83.2 | 3.0 | -5.69 | 0.88 | 0.77 | 0.80 | 4.8 | 0.006 | 0.66 | 0.0 | 0.03 | 16.50 | 0.00 | 1.854 | 12.88 | 0.04 | 5.4 | 94.4 | 0.1 | -1.43 | 1.52 | 0.86 | 0.77 | 1.06 | 223875 | 12305 | 85 | 5842 | 0 | 0 | 0 | logfile |
✔ | 5Li4 | 4052 | 2021-01-06 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 92.06 | 2.94 | 14.2 | 78.7 | 7.1 | -4.35 | 0.24 | 0.30 | — | 4.4 | 0.004 | 0.97 | 0.0 | 0.05 | 13.81 | 0.01 | 2.155 | 24.43 | 0.05 | 15.0 | 84.4 | 0.6 | -3.64 | 4.65 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U5U | 20656 | 2021-01-15 | 2019-08-28 | 2.8 | 3.79 | — | 3.3 | 0.011 | 1.05 | 0.0 | 0.05 | 15.04 | 0.00 | 0.113 | 30.75 | 0.54 | 8.5 | 91.3 | 0.2 | -4.59 | 0.85 | 0.79 | 1.79 | 3.3 | 0.004 | 0.80 | 3.0 | 0.05 | 13.84 | 0.01 | 1.573 | 17.88 | 0.04 | 5.4 | 94.5 | 0.1 | -0.63 | 5.37 | 0.84 | 0.77 | 1.62 | 169788 | 21864 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 6U5W | 20658 | 2021-01-14 | 2019-08-28 | 3.3 | 4.24 | — | 3.7 | 0.010 | 0.85 | 6.0 | 0.05 | 13.69 | 0.00 | 0.153 | 29.88 | 0.33 | 8.2 | 91.6 | 0.3 | -3.64 | 0.90 | 0.85 | 1.93 | 3.7 | 0.004 | 0.73 | 0.0 | 0.04 | 13.42 | 0.00 | 1.721 | 16.48 | 0.00 | 5.2 | 94.8 | 0.0 | -0.33 | 0.58 | 0.90 | 0.85 | 1.81 | 164892 | 20808 | 24 | 0 | 18 | 0 | 0 | logfile |
✔ | 6o9J | 0661 | 2021-01-11 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 17.39 | 0.01 | 0.154 | 54.15 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.009 | 1.11 | 3.0 | 0.05 | 16.92 | 0.01 | 1.174 | 33.19 | 0.11 | 24.0 | 73.2 | 2.8 | -4.72 | 2.20 | 0.80 | 0.77 | 0.63 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |
✔ | 6ZTN | 11421 | 2021-01-15 | 2020-07-20 | 3.9 | 3.77 | 3.87 | 3.5 | 0.012 | 1.17 | 0.0 | 0.07 | 16.39 | 0.02 | 0.156 | 8.31 | 5.85 | 6.1 | 93.1 | 0.7 | -2.23 | 0.88 | 0.86 | 1.01 | 3.5 | 0.005 | 0.69 | 0.0 | 0.03 | 15.15 | 0.01 | 1.156 | 14.42 | 0.01 | 4.6 | 95.3 | 0.1 | -0.50 | 0.85 | 0.88 | 0.86 | 0.96 | 174624 | 8895 | 80 | 4872 | 489 | 0 | 0 | logfile |
✔ | 6VoC | 21260 | 2021-01-12 | 2020-01-30 | 3.1 | 3.49 | — | 20.0 | 0.006 | 0.90 | 0.0 | 0.06 | 8.74 | 0.01 | 0.163 | 459.01 | 0.00 | 1.9 | 98.1 | 0.0 | -1.94 | 0.19 | 0.06 | 0.07 | 3.2 | 0.021 | 3.00 | 492.0 | 0.15 | 17.70 | 0.01 | 1.369 | 190.59 | 0.04 | 29.4 | 67.4 | 3.1 | -5.84 | 7.93 | 0.26 | 0.12 | 0.01 | 214200 | 28560 | 180 | 0 | 0 | 0 | 0 | logfile |