Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUY	20484	2021-05-04	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.97	0.0	0.06	19.53	0.01	0.000	4.31	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.004	0.61	0.0	0.04	20.60	0.00	0.000	8.80	1.16	2.5	97.5	0.0	0.61	2.40	0.64	0.88	3.85	11784	1232	28	72	10	404	0	logfile
✘	7EFD	31084	2021-05-04	2021-03-21	1.77	1.79	1.83	1.9	0.034	3.25	60.0	0.10	15.30	0.00	0.000	2.62	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	5A9Z	6396	2021-05-06	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	196.22	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150547	6671	58	4527	131	0	0	logfile
✔	6VP0	21302	2021-05-03	2020-02-01	3.1	3.70	3.19	3.6	0.012	1.54	0.0	0.05	19.17	0.00	0.000	5.17	1.96	3.5	96.5	0.0	-1.11	0.58	0.77	3.02	3.6	0.003	0.59	0.0	0.04	17.07	0.01	2.268	6.41	0.00	1.9	98.1	0.0	2.69	2.40	0.53	0.75	2.49	7212	808	4	0	12	0	0	logfile
✔	7A5V	11657	2021-05-04	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.65	0.0	0.09	13.54	0.02	0.000	2.30	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.7	0.005	0.83	0.0	0.05	14.30	0.01	0.000	5.73	0.43	1.2	98.8	0.0	1.51	0.43	0.68	0.84	6.61	21155	2275	30	0	85	1015	0	logfile
✔	6PUT	20481	2021-05-04	2019-07-18	2.9	3.22	2.97	3.2	0.007	0.83	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.004	0.55	0.0	0.04	19.82	0.00	0.000	7.57	0.81	1.9	98.1	0.0	0.79	0.88	0.66	0.89	4.22	10976	1170	28	68	8	308	0	logfile
✔	6SHT	10205	2021-05-06	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.003	0.55	0.0	0.04	19.45	0.00	0.000	4.95	2.52	1.7	97.7	0.6	5.29	1.75	0.72	0.85	2.62	37152	4176	24	0	48	1728	0	logfile
✔	6PUW	20483	2021-05-04	2019-07-18	2.9	3.21	2.93	3.1	0.019	0.79	0.0	0.13	19.96	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.002	0.54	0.0	0.04	20.93	0.00	0.000	9.74	0.82	2.8	97.2	0.0	0.80	0.88	0.69	0.90	4.30	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2021-05-04	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.004	0.50	0.0	0.04	21.03	0.00	0.000	7.65	0.58	1.7	98.3	0.0	0.70	0.39	0.70	0.91	4.04	11702	1230	28	72	10	340	0	logfile
✘	7EFC	31083	2021-05-04	2021-03-21	1.7	1.76	1.83	1.9	0.033	3.25	80.0	0.10	14.95	0.00	0.000	2.92	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✘	7A4M	11638	2021-05-07	2020-08-20	1.22	1.13	1.29	1.2	0.010	1.37	0.0	0.09	13.82	0.01	0.001	2.43	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	6ZP7	11337	2021-05-05	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.00	0.008	15.90	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.005	0.74	0.0	0.11	15.35	0.00	0.794	12.58	0.28	4.4	95.6	0.0	-0.14	1.40	0.82	0.83	2.13	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2021-05-05	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.00	0.012	14.01	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.006	0.75	0.0	0.11	15.04	0.00	0.795	11.55	0.44	4.3	95.7	0.0	0.13	0.72	0.83	0.84	2.04	23615	2861	33	0	92	0	0	logfile
✘	7B0N	11969	2021-05-07	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.47	14.71	0.01	0.019	3.78	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129439	8092	62	0	38	0	64087	logfile
✔	5A1A	2984	2021-05-06	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.11	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.71	0.0	0.04	17.47	0.00	1.971	11.85	3.32	3.4	96.5	0.1	-0.69	0.89	0.53	0.79	3.97	33696	4088	12	0	20	776	0	logfile
✘	4V8Y	2421	2021-05-14	2013-07-20	4.3	4.35	—	4.3	0.016	1.72	246.0	0.10	19.94	0.01	0.030	35.19	23.07	10.6	82.9	6.5	-4.49	0.62	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	221288	12072	110	5354	711	0	7033	logfile
✔	6TUP	10593	2021-05-05	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.5	0.034	2.29	0.0	0.20	26.66	0.01	0.685	106.74	1.62	3.4	96.6	0.0	-3.10	9.78	0.57	0.63	0.14	22400	2300	100	300	0	0	0	logfile
✔	5ooL	3842	2021-05-05	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.28	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	4.9	0.007	0.96	0.0	0.05	17.87	0.01	1.161	31.30	1.18	7.0	93.0	0.0	-1.08	1.62	0.86	0.85	0.83	98998	8198	66	1497	124	0	0	logfile
✔	6D90	7834	2021-05-14	2018-04-27	3.2	4.98	—	4.8	0.011	1.59	47.0	0.11	20.56	0.01	0.076	6.86	11.49	13.8	83.2	3.0	-5.69	0.88	0.77	0.80	4.8	0.005	0.71	0.0	0.04	17.78	0.01	1.990	15.70	0.58	6.0	93.9	0.1	-1.49	1.52	0.89	0.85	0.87	223875	12305	85	5842	0	0	0	logfile
✔	6oiG	20077	2021-05-07	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.41	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.01	6.0	0.05	18.80	0.01	1.442	33.72	1.00	13.5	86.3	0.2	-2.92	3.16	0.89	0.84	0.00	129140	6757	48	3522	116	0	0	logfile

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