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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUW | 20483 | 2024-03-15 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 20.01 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.004 | 0.58 | 0.0 | 0.04 | 21.45 | 0.00 | 0.000 | 8.88 | 2.15 | 3.5 | 96.5 | 0.0 | 0.46 | 0.36 | 0.69 | 0.90 | 4.22 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✘ | 8BQV | 16188 | 2024-03-11 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✘ | 8AZT | 15771 | 2024-03-10 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PUY | 20484 | 2024-03-15 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.87 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 7A5V | 11657 | 2024-03-18 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 14.87 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | 1.8 | 0.002 | 0.61 | 0.0 | 0.05 | 13.88 | 0.00 | 0.000 | 4.57 | 0.57 | 0.5 | 99.5 | 0.0 | 2.01 | 0.35 | 0.71 | 0.86 | 6.31 | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✘ | 8CE7 | 16600 | 2024-03-15 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A9Z | 6396 | 2024-03-27 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 28.05 | 0.03 | 0.000 | 199.42 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.006 | 0.94 | 0.0 | 0.04 | 25.37 | 0.01 | 0.000 | 36.51 | 0.22 | 20.5 | 77.2 | 2.3 | -4.19 | 2.91 | 0.87 | 0.81 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✘ | 6PUZ | 20485 | 2024-03-15 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.79 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 8PVB | 17960 | 2024-03-17 | 2023-07-17 | 3.6 | 3.05 | 3.14 | 3.2 | 0.010 | 1.70 | 0.0 | 0.09 | 16.05 | 0.01 | 0.000 | 1.17 | 1.27 | 1.6 | 98.4 | 0.0 | -0.14 | 0.60 | 0.79 | 4.63 | 3.2 | 0.004 | 0.61 | 0.0 | 0.04 | 15.10 | 0.00 | 0.000 | 6.41 | 1.77 | 1.2 | 98.8 | 0.0 | 0.62 | 1.00 | 0.73 | 0.84 | 3.89 | 19225 | 2275 | 25 | 0 | 80 | 0 | 0 | logfile |
✔ | 6PUT | 20481 | 2024-03-15 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.003 | 0.54 | 0.0 | 0.04 | 20.57 | 0.00 | 0.000 | 8.58 | 2.02 | 2.0 | 98.0 | 0.0 | 0.73 | 0.88 | 0.65 | 0.89 | 4.05 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6SHT | 10205 | 2024-03-23 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 19.44 | 0.00 | 0.000 | 4.10 | 3.19 | 1.8 | 97.8 | 0.3 | 5.24 | 1.77 | 0.72 | 0.85 | 2.06 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 7EFC | 31083 | 2024-03-10 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 14.88 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.006 | 0.87 | 0.0 | 0.05 | 14.55 | 0.01 | 1.768 | 10.33 | 0.54 | 3.8 | 96.2 | 0.0 | 0.14 | 0.88 | 0.80 | 0.85 | 6.64 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 7EFD | 31084 | 2024-03-10 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.32 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2024-03-19 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.013 | 0.92 | 0.0 | 0.17 | 16.89 | 0.00 | 0.008 | 16.12 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.76 | 0.0 | 0.11 | 14.58 | 0.00 | 0.794 | 10.08 | 1.87 | 3.7 | 96.3 | 0.0 | 0.13 | 1.32 | 0.81 | 0.84 | 2.12 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2024-03-19 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.013 | 0.92 | 0.0 | 0.15 | 16.89 | 0.00 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.75 | 0.0 | 0.11 | 14.46 | 0.00 | 0.792 | 9.01 | 1.63 | 3.6 | 96.4 | 0.0 | 0.31 | 0.67 | 0.82 | 0.84 | 2.06 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 8UF0 | 42181 | 2024-03-20 | 2023-10-03 | 2.02 | 2.34 | 2.08 | 2.2 | 0.007 | 0.76 | 0.0 | 0.05 | 17.50 | 0.01 | 0.013 | 4.37 | 0.54 | 1.8 | 98.2 | 0.0 | 0.09 | 0.84 | 0.89 | 5.17 | 2.2 | 0.003 | 0.62 | 0.0 | 0.05 | 17.90 | 0.01 | 2.125 | 3.00 | 1.19 | 1.1 | 98.9 | 0.0 | 1.26 | 0.34 | 0.82 | 0.88 | 4.15 | 27000 | 3456 | 48 | 0 | 0 | 804 | 0 | logfile |
✘ | 8AZS | 15770 | 2024-03-14 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2024-03-16 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 16.45 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.004 | 0.88 | 1.0 | 0.13 | 16.59 | 0.00 | 1.500 | 9.41 | 1.03 | 3.8 | 96.2 | 0.0 | -0.16 | 2.49 | 0.60 | 0.75 | 2.25 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5A1A | 2984 | 2024-03-22 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.18 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.004 | 0.70 | 0.0 | 0.05 | 17.31 | 0.00 | 1.928 | 11.82 | 3.52 | 3.3 | 96.6 | 0.1 | -0.62 | 0.59 | 0.53 | 0.79 | 4.08 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5ooL | 3842 | 2024-03-20 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 18.65 | 0.01 | 0.037 | 6.31 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | 4.9 | 0.005 | 0.91 | 1.0 | 0.05 | 21.01 | 0.01 | 1.050 | 29.75 | 4.96 | 6.5 | 93.4 | 0.0 | -1.20 | 1.56 | 0.78 | 0.71 | 0.73 | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |