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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SHT | 10205 | 2023-07-17 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.002 | 0.53 | 0.0 | 0.04 | 19.52 | 0.00 | 0.000 | 5.30 | 1.95 | 1.7 | 97.9 | 0.4 | 5.47 | 1.48 | 0.71 | 0.84 | 1.97 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 6PUW | 20483 | 2023-07-06 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.85 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-07-06 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.66 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 6PUZ | 20485 | 2023-07-06 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.70 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.003 | 0.50 | 0.0 | 0.04 | 21.39 | 0.00 | 0.000 | 8.06 | 0.68 | 2.1 | 97.9 | 0.0 | 0.67 | 0.40 | 0.70 | 0.90 | 4.06 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 7EFD | 31084 | 2023-07-03 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.47 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | 1.9 | 0.004 | 0.74 | 0.0 | 0.05 | 14.91 | 0.00 | 1.834 | 7.38 | 0.00 | 3.4 | 96.0 | 0.6 | 0.90 | 0.55 | 0.80 | 0.84 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-07-03 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 15.03 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.60 | 0.00 | 1.907 | 5.77 | 0.54 | 2.5 | 97.5 | 0.0 | 0.68 | 0.91 | 0.80 | 0.85 | 5.94 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 6ZP7 | 11337 | 2023-07-11 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.013 | 0.92 | 0.0 | 0.17 | 13.62 | 0.01 | 0.008 | 16.12 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2023-07-11 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.013 | 0.92 | 0.0 | 0.15 | 13.62 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.81 | 0.0 | 0.11 | 15.16 | 0.00 | 0.778 | 9.09 | 0.16 | 3.4 | 96.6 | 0.0 | 0.29 | 0.66 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2023-07-11 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.97 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.005 | 0.86 | 0.0 | 0.13 | 16.23 | 0.00 | 1.907 | 9.08 | 0.17 | 5.4 | 94.6 | 0.0 | -0.26 | 2.50 | 0.60 | 0.75 | 2.36 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5A1A | 2984 | 2023-07-15 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.15 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.63 | 0.00 | 1.961 | 10.92 | 2.75 | 2.3 | 97.6 | 0.1 | -0.56 | 1.09 | 0.53 | 0.79 | 3.86 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 7PQU | 13605 | 2023-07-05 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.88 | 0.0 | 0.05 | 16.74 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.43 | 0.01 | 2.258 | 9.01 | 0.18 | 6.0 | 94.0 | 0.0 | -0.28 | 0.99 | 0.75 | 0.79 | 2.45 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✔ | 7o1C | 12695 | 2023-07-23 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.90 | 0.0 | 0.06 | 14.38 | 0.02 | 0.055 | 6.76 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | 2.3 | 0.005 | 0.68 | 0.0 | 0.04 | 14.63 | 0.01 | 0.858 | 8.12 | 2.28 | 4.6 | 95.3 | 0.1 | -0.35 | 1.01 | 0.82 | 0.85 | 2.99 | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 6oiG | 20077 | 2023-07-10 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.69 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.010 | 1.00 | 6.0 | 0.05 | 18.66 | 0.01 | 1.416 | 32.12 | 0.74 | 13.7 | 86.2 | 0.1 | -2.80 | 3.10 | 0.89 | 0.86 | 0.08 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-07-03 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.62 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2023-07-16 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 16.55 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.009 | 0.78 | 0.0 | 0.04 | 17.30 | 0.01 | 1.871 | 15.89 | 1.18 | 7.5 | 92.5 | 0.1 | -1.31 | 2.50 | 0.90 | 0.90 | 1.93 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2023-07-18 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 5M32 | 4146 | 2023-07-12 | 2016-10-14 | 3.8 | 3.96 | — | 3.8 | 0.009 | 1.47 | 12.0 | 0.07 | 13.19 | 0.01 | 0.185 | 19.65 | 3.10 | 14.4 | 83.9 | 1.7 | -5.42 | 0.81 | 0.79 | 1.92 | 3.8 | 0.003 | 0.83 | 0.0 | 0.05 | 14.71 | 0.00 | 1.504 | 15.88 | 0.44 | 11.4 | 88.3 | 0.3 | -1.95 | 1.49 | 0.83 | 0.81 | 1.30 | 76085 | 10500 | 52 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Y7C | 10713 | 2023-07-13 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.44 | 1.0 | 0.06 | 18.67 | 0.02 | 0.193 | 10.34 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.013 | 0.93 | 0.0 | 0.04 | 18.90 | 0.01 | 1.977 | 36.16 | 0.35 | 15.8 | 84.1 | 0.1 | -3.77 | 2.58 | 0.92 | 0.79 | 0.35 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 7QGH | 13955 | 2023-07-23 | 2021-12-08 | 4.48 | 9.26 | — | 4.8 | 0.016 | 1.62 | 58.0 | 0.11 | 15.10 | 0.01 | 0.197 | 5.44 | 1.41 | 8.8 | 90.2 | 1.0 | -4.05 | 0.66 | 0.38 | — | 4.5 | 0.006 | 0.93 | 1.0 | 0.05 | 18.29 | 0.01 | 1.254 | 59.68 | 0.04 | 11.4 | 88.5 | 0.1 | -2.68 | 2.11 | 0.85 | 0.78 | — | 147973 | 6046 | 58 | 4716 | 3 | 9 | 0 | logfile |
✔ | 6FKi | 4272 | 2023-07-17 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 11.86 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.007 | 0.94 | 9.0 | 0.06 | 13.87 | 0.01 | 1.403 | 24.57 | 0.05 | 4.3 | 95.6 | 0.1 | -0.38 | 1.28 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |