Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SHT	10205	2023-07-17	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.002	0.53	0.0	0.04	19.52	0.00	0.000	5.30	1.95	1.7	97.9	0.4	5.47	1.48	0.71	0.84	1.97	37152	4176	24	0	48	1728	0	logfile
✘	6PUW	20483	2023-07-06	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.85	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1170	28	72	10	312	0	logfile
✘	6PUY	20484	2023-07-06	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.66	0.01	0.000	4.36	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11784	1232	28	72	10	404	0	logfile
✔	6PUZ	20485	2023-07-06	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.86	0.0	0.05	19.70	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.50	0.0	0.04	21.39	0.00	0.000	8.06	0.68	2.1	97.9	0.0	0.67	0.40	0.70	0.90	4.06	11702	1230	28	72	10	340	0	logfile
✔	7EFD	31084	2023-07-03	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	7EFC	31083	2023-07-03	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✘	6ZP7	11337	2023-07-11	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	13.62	0.01	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2023-07-11	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	13.62	0.01	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.81	0.0	0.11	15.16	0.00	0.778	9.09	0.16	3.4	96.6	0.0	0.29	0.66	0.82	0.84	2.09	23615	2861	33	0	92	0	0	logfile
✔	7B0N	11969	2023-07-11	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.97	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.005	0.86	0.0	0.13	16.23	0.00	1.907	9.08	0.17	5.4	94.6	0.0	-0.26	2.50	0.60	0.75	2.36	129439	8092	62	0	38	0	64087	logfile
✔	5A1A	2984	2023-07-15	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✔	7PQU	13605	2023-07-05	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.74	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.62	0.0	0.04	16.43	0.01	2.258	9.01	0.18	6.0	94.0	0.0	-0.28	0.99	0.75	0.79	2.45	10798	1312	12	0	8	14	0	logfile
✔	7o1C	12695	2023-07-23	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.90	0.0	0.06	14.38	0.02	0.055	6.76	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.005	0.68	0.0	0.04	14.63	0.01	0.858	8.12	2.28	4.6	95.3	0.1	-0.35	1.01	0.82	0.85	2.99	148175	6042	76	4638	489	800	0	logfile
✔	6oiG	20077	2023-07-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	7XDi	33148	2023-07-03	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.004	0.79	0.0	0.04	17.10	0.01	2.125	14.62	0.92	5.3	94.0	0.6	0.66	1.35	0.58	0.82	1.62	53669	6804	42	0	0	0	0	logfile
✔	7AQD	11864	2023-07-16	2020-10-21	3.1	3.48	—	3.2	0.005	1.09	11.0	0.05	16.55	0.01	0.152	6.41	1.12	5.2	94.5	0.3	-2.11	0.78	0.72	1.63	3.2	0.009	0.78	0.0	0.04	17.30	0.01	1.871	15.89	1.18	7.5	92.5	0.1	-1.31	2.50	0.90	0.90	1.93	94357	3543	32	3106	0	0	0	logfile
✘	3JC7	6536	2023-07-18	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.92	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✔	5M32	4146	2023-07-12	2016-10-14	3.8	3.96	—	3.8	0.009	1.47	12.0	0.07	13.19	0.01	0.185	19.65	3.10	14.4	83.9	1.7	-5.42	0.81	0.79	1.92	3.8	0.003	0.83	0.0	0.05	14.71	0.00	1.504	15.88	0.44	11.4	88.3	0.3	-1.95	1.49	0.83	0.81	1.30	76085	10500	52	0	8	0	0	logfile
✔	6Y7C	10713	2023-07-13	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.67	0.02	0.193	10.34	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.013	0.93	0.0	0.04	18.90	0.01	1.977	36.16	0.35	15.8	84.1	0.1	-3.77	2.58	0.92	0.79	0.35	79690	5381	34	1735	0	0	0	logfile
✔	7QGH	13955	2023-07-23	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	15.10	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.006	0.93	1.0	0.05	18.29	0.01	1.254	59.68	0.04	11.4	88.5	0.1	-2.68	2.11	0.85	0.78	—	147973	6046	58	4716	3	9	0	logfile
✔	6FKi	4272	2023-07-17	2018-01-24	4.3	4.39	4.31	4.3	0.015	1.42	28.0	0.09	11.86	0.01	0.201	58.71	0.15	3.9	96.0	0.1	-0.17	0.63	0.65	—	4.3	0.007	0.94	9.0	0.06	13.87	0.01	1.403	24.57	0.05	4.3	95.6	0.1	-0.38	1.28	0.69	0.78	—	39231	5201	31	0	10	0	0	logfile

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