Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PUT	20481	2023-11-15	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.13	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.003	0.53	0.0	0.04	20.66	0.00	0.000	8.82	1.11	2.0	98.0	0.0	0.82	0.88	0.65	0.89	4.06	10976	1170	28	68	8	308	0	logfile
✘	6SHT	10205	2023-11-22	2019-08-08	2.73	2.88	2.75	2.8	0.015	1.55	0.0	0.07	19.28	0.01	0.000	7.75	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37152	4176	24	0	48	1728	0	logfile
✘	6PUY	20484	2023-11-15	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.66	0.01	0.000	4.36	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11784	1232	28	72	10	404	0	logfile
✘	8AZT	15771	2023-11-13	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8CE7	16600	2023-11-15	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.71	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✔	6PUW	20483	2023-11-15	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.83	0.00	0.000	7.69	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.003	0.56	0.0	0.04	21.57	0.00	0.000	9.12	1.53	3.2	96.8	0.0	0.60	0.39	0.69	0.90	3.99	11116	1170	28	72	10	312	0	logfile
✔	6PUZ	20485	2023-11-15	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.86	0.0	0.05	19.70	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.006	0.58	0.0	0.04	21.59	0.00	0.000	7.88	0.77	2.3	97.7	0.0	0.45	0.39	0.70	0.90	4.02	11702	1230	28	72	10	340	0	logfile
✘	8BQV	16188	2023-11-14	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	7EFC	31083	2023-11-13	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	15.03	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.003	0.69	0.0	0.04	14.60	0.00	1.907	5.77	0.54	2.5	97.5	0.0	0.68	0.91	0.80	0.85	5.94	4004	480	4	0	4	156	0	logfile
✔	7EFD	31084	2023-11-13	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✘	6ZP7	11337	2023-11-18	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	13.62	0.01	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2023-11-18	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	13.62	0.01	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.003	0.81	0.0	0.11	15.16	0.00	0.778	9.09	0.16	3.4	96.6	0.0	0.29	0.66	0.82	0.84	2.09	23615	2861	33	0	92	0	0	logfile
✘	8AZS	15770	2023-11-14	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✔	7B0N	11969	2023-11-18	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.98	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.005	0.85	0.0	0.13	16.25	0.00	1.921	9.09	0.10	5.2	94.7	0.0	-0.27	2.50	0.60	0.75	2.35	129439	8092	62	0	38	0	64087	logfile
✔	5A1A	2984	2023-11-21	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✔	7PQU	13605	2023-11-15	2021-09-20	3.03	1.80	—	3.4	0.008	0.88	0.0	0.05	16.74	0.01	0.051	14.73	5.14	7.9	92.0	0.1	-3.95	0.77	0.80	2.84	3.5	0.003	0.62	0.0	0.04	16.43	0.01	2.258	9.01	0.18	6.0	94.0	0.0	-0.28	0.99	0.75	0.79	2.45	10798	1312	12	0	8	14	0	logfile
✘	8BQW	16189	2023-11-17	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	5Li4	4052	2023-11-17	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7XDi	33148	2023-11-13	2022-03-27	3.8	3.93	3.63	3.9	0.003	0.71	0.0	0.04	16.85	0.01	0.137	25.89	0.56	4.7	94.6	0.6	0.46	0.58	0.82	1.80	3.9	0.004	0.79	0.0	0.04	17.10	0.01	2.125	14.62	0.92	5.3	94.0	0.6	0.66	1.35	0.58	0.82	1.62	53669	6804	42	0	0	0	0	logfile
✔	7AQD	11864	2023-11-21	2020-10-21	3.1	3.48	—	3.2	0.005	1.09	11.0	0.05	16.55	0.01	0.152	6.41	1.12	5.2	94.5	0.3	-2.11	0.78	0.72	1.63	3.2	0.008	0.72	0.0	0.04	17.24	0.01	1.873	15.28	0.61	7.2	92.7	0.1	-1.22	2.50	0.90	0.90	1.83	94357	3543	32	3106	0	0	0	logfile

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