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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PUT | 20481 | 2023-11-15 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.003 | 0.53 | 0.0 | 0.04 | 20.66 | 0.00 | 0.000 | 8.82 | 1.11 | 2.0 | 98.0 | 0.0 | 0.82 | 0.88 | 0.65 | 0.89 | 4.06 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-11-22 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-11-15 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.66 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-11-13 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 8CE7 | 16600 | 2023-11-15 | 2023-02-01 | 2.7 | 2.34 | 2.46 | 2.7 | 0.010 | 1.47 | 12.0 | 0.09 | 13.19 | 0.01 | 0.000 | 16.71 | 3.33 | 9.0 | 91.0 | 0.0 | -3.63 | 0.44 | 0.73 | 6.36 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10512 | 1512 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PUW | 20483 | 2023-11-15 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.83 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.57 | 0.00 | 0.000 | 9.12 | 1.53 | 3.2 | 96.8 | 0.0 | 0.60 | 0.39 | 0.69 | 0.90 | 3.99 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6PUZ | 20485 | 2023-11-15 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.70 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.006 | 0.58 | 0.0 | 0.04 | 21.59 | 0.00 | 0.000 | 7.88 | 0.77 | 2.3 | 97.7 | 0.0 | 0.45 | 0.39 | 0.70 | 0.90 | 4.02 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✘ | 8BQV | 16188 | 2023-11-14 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✔ | 7EFC | 31083 | 2023-11-13 | 2021-03-21 | 1.7 | 1.76 | 1.76 | 1.9 | 0.032 | 3.16 | 16.0 | 0.09 | 15.03 | 0.02 | 0.001 | 2.15 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.75 | 0.84 | 6.42 | 1.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.60 | 0.00 | 1.907 | 5.77 | 0.54 | 2.5 | 97.5 | 0.0 | 0.68 | 0.91 | 0.80 | 0.85 | 5.94 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✔ | 7EFD | 31084 | 2023-11-13 | 2021-03-21 | 1.77 | 1.78 | 1.82 | 1.9 | 0.033 | 3.16 | 12.0 | 0.09 | 15.47 | 0.02 | 0.001 | 1.61 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.74 | 0.82 | 5.75 | 1.9 | 0.004 | 0.74 | 0.0 | 0.05 | 14.91 | 0.00 | 1.834 | 7.38 | 0.00 | 3.4 | 96.0 | 0.6 | 0.90 | 0.55 | 0.80 | 0.84 | 6.49 | 4004 | 480 | 4 | 0 | 4 | 156 | 0 | logfile |
✘ | 6ZP7 | 11337 | 2023-11-18 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.013 | 0.92 | 0.0 | 0.17 | 13.62 | 0.01 | 0.008 | 16.12 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2023-11-18 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.013 | 0.92 | 0.0 | 0.15 | 13.62 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.81 | 0.0 | 0.11 | 15.16 | 0.00 | 0.778 | 9.09 | 0.16 | 3.4 | 96.6 | 0.0 | 0.29 | 0.66 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-11-14 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2023-11-18 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.98 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.005 | 0.85 | 0.0 | 0.13 | 16.25 | 0.00 | 1.921 | 9.09 | 0.10 | 5.2 | 94.7 | 0.0 | -0.27 | 2.50 | 0.60 | 0.75 | 2.35 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5A1A | 2984 | 2023-11-21 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.15 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.003 | 0.66 | 0.0 | 0.04 | 17.63 | 0.00 | 1.961 | 10.92 | 2.75 | 2.3 | 97.6 | 0.1 | -0.56 | 1.09 | 0.53 | 0.79 | 3.86 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 7PQU | 13605 | 2023-11-15 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.88 | 0.0 | 0.05 | 16.74 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.43 | 0.01 | 2.258 | 9.01 | 0.18 | 6.0 | 94.0 | 0.0 | -0.28 | 0.99 | 0.75 | 0.79 | 2.45 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✘ | 8BQW | 16189 | 2023-11-17 | 2023-01-18 | 2.3 | 2.12 | 2.14 | 2.2 | 0.008 | 1.14 | 0.0 | 0.07 | 8.96 | 0.00 | 0.052 | 12.77 | 0.00 | 9.6 | 90.4 | 0.0 | -3.78 | 0.46 | 0.75 | 7.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17385 | 2310 | 90 | 0 | 270 | 135 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-11-17 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.07 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.1 | 0.004 | 1.04 | 0.0 | 0.05 | 13.71 | 0.01 | 1.950 | 32.75 | 0.09 | 15.2 | 83.8 | 1.0 | -3.85 | 4.19 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-11-13 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.62 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AQD | 11864 | 2023-11-21 | 2020-10-21 | 3.1 | 3.48 | — | 3.2 | 0.005 | 1.09 | 11.0 | 0.05 | 16.55 | 0.01 | 0.152 | 6.41 | 1.12 | 5.2 | 94.5 | 0.3 | -2.11 | 0.78 | 0.72 | 1.63 | 3.2 | 0.008 | 0.72 | 0.0 | 0.04 | 17.24 | 0.01 | 1.873 | 15.28 | 0.61 | 7.2 | 92.7 | 0.1 | -1.22 | 2.50 | 0.90 | 0.90 | 1.83 | 94357 | 3543 | 32 | 3106 | 0 | 0 | 0 | logfile |