Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7EFD	31084	2022-04-06	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6PUT	20481	2022-04-05	2019-07-18	2.9	3.22	2.96	3.2	0.007	0.82	0.0	0.05	19.07	0.01	0.000	5.03	0.20	2.5	97.5	0.0	-3.43	0.73	0.90	4.56	3.2	0.005	0.58	0.0	0.04	20.73	0.00	0.000	8.39	1.21	1.7	98.3	0.0	0.61	0.88	0.65	0.89	4.26	10976	1170	28	68	8	308	0	logfile
✘	7A5V	11657	2022-04-06	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	6PUY	20484	2022-04-05	2019-07-18	2.8	3.15	2.88	3.1	0.015	0.90	0.0	0.06	19.62	0.01	0.000	4.27	0.19	3.0	97.0	0.0	-3.07	0.75	0.90	4.33	3.1	0.003	0.56	0.0	0.04	21.03	0.00	0.000	8.71	1.16	2.5	97.5	0.0	0.74	3.18	0.58	0.84	3.91	11784	1232	28	72	10	404	0	logfile
✘	7EFC	31083	2022-04-06	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6PUW	20483	2022-04-05	2019-07-18	2.9	3.21	2.93	3.1	0.013	0.77	0.0	0.04	19.88	0.00	0.000	7.60	0.20	2.1	97.9	0.0	-2.24	0.74	0.90	4.70	3.1	0.005	0.58	0.0	0.04	21.70	0.00	0.000	8.17	1.23	3.2	96.8	0.0	0.37	0.36	0.68	0.90	4.32	11116	1170	28	72	10	312	0	logfile
✔	6SHT	10205	2022-04-08	2019-08-08	2.73	2.88	2.78	2.8	0.015	1.55	0.0	0.07	17.80	0.01	0.000	10.21	5.56	0.6	98.8	0.6	-2.82	0.81	0.91	3.74	2.8	0.004	0.57	0.0	0.04	19.60	0.00	0.000	5.44	2.24	1.4	98.3	0.3	5.07	1.76	0.72	0.84	2.18	37152	4176	24	0	48	1728	0	logfile
✔	6PUZ	20485	2022-04-05	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.45	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.003	0.49	0.0	0.04	21.32	0.00	0.000	7.65	0.87	2.2	97.8	0.0	0.66	0.39	0.69	0.89	4.11	11702	1230	28	72	10	340	0	logfile
✔	5A9Z	6396	2022-04-13	2015-07-23	4.7	4.83	—	4.7	0.013	1.89	26.0	0.14	23.31	0.03	0.000	199.39	29.15	25.1	49.6	25.2	-7.73	0.81	0.65	—	4.7	0.007	1.03	0.0	0.05	19.42	0.01	0.000	40.39	0.19	21.0	76.7	2.4	-4.44	2.93	0.87	0.82	—	150547	6671	58	4527	131	0	0	logfile
✘	7A4M	11638	2022-04-14	2020-08-20	1.22	1.13	1.28	1.2	0.010	1.38	0.0	0.09	13.82	0.01	0.001	2.76	1.18	1.8	98.2	0.0	2.86	0.40	0.57	8.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	76248	4128	24	0	48	2640	36216	logfile
✔	6ZP7	11337	2022-04-06	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.07	0.52	3.0	97.0	0.0	-0.93	0.64	0.59	1.49	3.7	0.003	0.75	0.0	0.11	15.23	0.00	0.791	10.33	0.28	3.5	96.5	0.0	0.07	1.33	0.81	0.83	2.09	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2022-04-06	2020-07-08	3.1	3.90	3.32	3.6	0.012	0.83	0.0	0.15	13.52	0.01	0.012	14.20	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.004	0.75	0.0	0.11	14.99	0.00	0.787	10.18	0.40	3.6	96.4	0.0	0.24	0.66	0.82	0.84	2.27	23615	2861	33	0	92	0	0	logfile
✔	7B0N	11969	2022-04-07	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.97	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.011	1.11	2.0	0.13	16.15	0.01	1.890	9.69	0.10	5.7	94.3	0.0	-0.97	2.24	0.60	0.75	2.50	129439	8092	62	0	38	0	64087	logfile
✔	5A1A	2984	2022-04-08	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.005	0.78	0.0	0.05	17.68	0.01	1.924	12.32	3.18	3.0	96.9	0.1	-0.70	0.61	0.54	0.79	3.98	33696	4088	12	0	20	776	0	logfile
✘	4V8Y	2421	2022-04-23	2013-07-20	4.3	4.35	—	4.3	0.026	1.73	246.0	0.10	19.96	0.02	0.030	35.60	23.07	10.6	82.9	6.5	-4.49	0.62	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	221288	12072	110	5354	711	0	7033	logfile
✔	6TUP	10593	2022-04-06	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.6	0.039	2.56	0.0	0.24	27.07	0.01	1.098	116.88	1.25	3.2	96.8	0.0	-2.76	8.49	0.55	0.60	-0.09	22400	2300	100	300	0	0	0	logfile
✔	5ooL	3842	2022-04-09	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.29	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	4.9	0.005	0.92	0.0	0.05	17.50	0.01	1.048	29.33	1.29	6.3	93.6	0.0	-1.21	1.56	0.87	0.86	0.91	98998	8198	66	1497	124	0	0	logfile
✔	7o1C	12695	2022-04-12	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.91	0.0	0.06	14.39	0.02	0.055	6.78	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.005	0.71	0.0	0.04	14.72	0.01	0.867	8.21	2.44	4.4	95.5	0.1	-0.43	1.00	0.81	0.84	2.98	148175	6042	76	4638	489	800	0	logfile
✔	7o1A	12694	2022-04-11	2021-03-29	2.4	2.81	—	2.3	0.014	1.84	6.0	0.05	14.10	0.02	0.059	5.41	0.04	3.7	96.3	0.0	-2.95	0.86	0.87	3.73	2.2	0.005	0.69	0.0	0.04	14.39	0.01	1.692	6.98	2.34	3.5	96.5	0.0	0.17	0.99	0.87	0.89	3.95	146602	5694	96	4637	476	2026	0	logfile
✘	7EPP	31248	2022-04-07	2021-04-27	2.4	2.51	—	2.6	0.004	0.67	0.0	0.04	16.13	0.01	0.073	3.23	3.57	7.3	92.7	0.0	-2.99	0.59	0.81	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81862	10187	61	0	0	1830	0	logfile

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