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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7A5V | 11657 | 2023-02-23 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 13.54 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✘ | 6PUY | 20484 | 2023-02-20 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.66 | 0.01 | 0.000 | 4.36 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✔ | 6PUT | 20481 | 2023-02-19 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.13 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.006 | 0.59 | 0.0 | 0.05 | 20.77 | 0.00 | 0.000 | 8.24 | 1.11 | 1.9 | 98.1 | 0.0 | 0.58 | 0.88 | 0.63 | 0.88 | 4.31 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✔ | 6PUW | 20483 | 2023-02-20 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.85 | 0.00 | 0.000 | 7.69 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.73 | 0.00 | 0.000 | 9.02 | 2.15 | 3.4 | 96.6 | 0.0 | 0.49 | 0.38 | 0.69 | 0.90 | 4.23 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✘ | 8AZT | 15771 | 2023-02-17 | 2022-09-06 | 3.7 | 3.48 | 2.93 | 4.2 | 0.011 | 1.98 | 0.0 | 0.11 | 15.54 | 0.01 | 0.000 | 19.56 | 4.35 | 10.3 | 89.7 | 0.0 | -6.12 | 0.40 | 0.59 | 5.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5424 | 744 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PUZ | 20485 | 2023-02-20 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.86 | 0.0 | 0.05 | 19.70 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 6ZP7 | 11337 | 2023-02-24 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.12 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | 3.7 | 0.004 | 0.76 | 0.0 | 0.11 | 15.26 | 0.00 | 0.792 | 11.28 | 0.36 | 4.2 | 95.8 | 0.0 | 0.03 | 1.34 | 0.82 | 0.84 | 2.13 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2023-02-24 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.01 | 0.012 | 14.22 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.003 | 0.73 | 0.0 | 0.11 | 15.06 | 0.00 | 0.789 | 9.67 | 0.28 | 3.5 | 96.5 | 0.0 | 0.24 | 0.67 | 0.82 | 0.84 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✘ | 8AZS | 15770 | 2023-02-18 | 2022-09-06 | 2.9 | 2.78 | 2.55 | 2.8 | 0.011 | 1.50 | 0.0 | 0.12 | 16.09 | 0.01 | 0.017 | 1346.55 | 0.00 | 3.1 | 96.9 | 0.0 | -1.98 | 0.27 | 0.40 | 5.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9036 | 1224 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PQU | 13605 | 2023-02-19 | 2021-09-20 | 3.03 | 1.80 | — | 3.4 | 0.008 | 0.88 | 0.0 | 0.05 | 16.74 | 0.01 | 0.051 | 14.73 | 5.14 | 7.9 | 92.0 | 0.1 | -3.95 | 0.77 | 0.80 | 2.84 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.43 | 0.01 | 2.258 | 9.01 | 0.18 | 6.0 | 94.0 | 0.0 | -0.28 | 0.99 | 0.75 | 0.79 | 2.45 | 10798 | 1312 | 12 | 0 | 8 | 14 | 0 | logfile |
✔ | 5Li4 | 4052 | 2023-02-23 | 2016-07-14 | 4.2 | 5.13 | — | 4.0 | 0.053 | 3.06 | 114.0 | 0.34 | 14.44 | 0.02 | 0.111 | 93.07 | 2.94 | 14.0 | 79.1 | 6.9 | -4.32 | 0.24 | 0.30 | — | 4.4 | 0.004 | 1.03 | 0.0 | 0.05 | 13.74 | 0.01 | 2.093 | 29.26 | 0.00 | 14.4 | 84.4 | 1.2 | -3.64 | 4.18 | 0.34 | 0.58 | — | 20070 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDi | 33148 | 2023-02-21 | 2022-03-27 | 3.8 | 3.93 | 3.63 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 16.85 | 0.01 | 0.137 | 25.89 | 0.56 | 4.7 | 94.6 | 0.6 | 0.46 | 0.58 | 0.82 | 1.80 | 3.9 | 0.004 | 0.79 | 0.0 | 0.04 | 17.10 | 0.01 | 2.125 | 14.60 | 0.92 | 5.3 | 94.0 | 0.6 | 0.66 | 1.35 | 0.58 | 0.82 | 1.62 | 53669 | 6804 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5o09 | 3726 | 2023-02-26 | 2017-05-16 | 3.6 | 3.66 | — | 3.7 | 0.014 | 1.48 | 32.0 | 0.10 | 13.27 | 0.01 | 0.180 | 18.46 | 1.36 | 6.3 | 92.8 | 0.8 | -4.52 | 0.53 | 0.60 | 0.71 | 3.6 | 0.004 | 0.80 | 0.0 | 0.04 | 16.71 | 0.00 | 2.078 | 19.79 | 0.52 | 5.7 | 94.3 | 0.0 | -0.59 | 1.63 | 0.61 | 0.76 | 1.22 | 67424 | 8648 | 40 | 16 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-02-21 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.30 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.12 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V4J | 21041 | 2023-02-26 | 2019-11-27 | 2.97 | 2.66 | — | 2.6 | 0.010 | 1.79 | 8.0 | 0.09 | 13.20 | 0.01 | 0.244 | 16.47 | 5.36 | 4.0 | 95.7 | 0.3 | -0.54 | 0.47 | 0.48 | 1.90 | 2.6 | 0.004 | 0.88 | 0.0 | 0.05 | 16.42 | 0.00 | 1.987 | 16.32 | 3.44 | 5.1 | 94.9 | 0.0 | -1.44 | 1.52 | 0.50 | 0.52 | 1.43 | 20637 | 2697 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-02-25 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 6CB1 | 7445 | 2023-02-27 | 2018-02-01 | 4.6 | 4.77 | — | 4.6 | 0.006 | 1.02 | 0.0 | 0.06 | 16.94 | 0.00 | 0.266 | 5.97 | 0.00 | 5.0 | 94.8 | 0.1 | -2.68 | 0.66 | 0.49 | — | 4.5 | 0.004 | 0.79 | 0.0 | 0.04 | 18.17 | 0.00 | 2.026 | 21.56 | 0.00 | 8.9 | 91.1 | 0.0 | -1.66 | 2.04 | 0.75 | 0.75 | — | 69945 | 6459 | 42 | 1615 | 694 | 0 | 0 | logfile |
✔ | 6TA3 | 10421 | 2023-02-19 | 2019-10-29 | 3.8 | 4.18 | — | 3.9 | 0.024 | 2.45 | 4.0 | 0.08 | 18.76 | 0.01 | 0.317 | 210.72 | 16.02 | 0.8 | 99.2 | 0.0 | 1.86 | 0.67 | 0.49 | 0.26 | 4.0 | 0.004 | 0.87 | 0.0 | 0.05 | 17.69 | 0.01 | 1.221 | 29.86 | 0.58 | 3.4 | 96.6 | 0.0 | -0.26 | 2.45 | 0.78 | 0.74 | 0.35 | 9491 | 1201 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6T61 | 10381 | 2023-02-27 | 2019-10-17 | 3.7 | 3.68 | — | 3.6 | 0.006 | 0.93 | 0.0 | 0.05 | 15.61 | 0.01 | 0.321 | 8.35 | 0.00 | 8.1 | 91.9 | 0.0 | -3.35 | 0.50 | 0.77 | 1.47 | 3.6 | 0.005 | 0.79 | 0.0 | 0.05 | 17.85 | 0.01 | 2.080 | 14.33 | 0.80 | 6.7 | 93.3 | 0.0 | 0.53 | 1.64 | 0.52 | 0.79 | 0.81 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2023-02-20 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.003 | 0.88 | 0.0 | 0.05 | 12.54 | 0.01 | 2.080 | 22.51 | 0.00 | 16.1 | 83.8 | 0.1 | -3.64 | 1.21 | 0.85 | 0.77 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |