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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7EFD | 31084 | 2022-04-06 | 2021-03-21 | 1.77 | 1.79 | 1.83 | 1.9 | 0.033 | 3.16 | 60.0 | 0.09 | 15.47 | 0.02 | 0.000 | 2.38 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.71 | 0.78 | 5.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20020 | 2400 | 20 | 0 | 20 | 780 | 0 | logfile |
✔ | 6PUT | 20481 | 2022-04-05 | 2019-07-18 | 2.9 | 3.22 | 2.96 | 3.2 | 0.007 | 0.82 | 0.0 | 0.05 | 19.07 | 0.01 | 0.000 | 5.03 | 0.20 | 2.5 | 97.5 | 0.0 | -3.43 | 0.73 | 0.90 | 4.56 | 3.2 | 0.005 | 0.58 | 0.0 | 0.04 | 20.73 | 0.00 | 0.000 | 8.39 | 1.21 | 1.7 | 98.3 | 0.0 | 0.61 | 0.88 | 0.65 | 0.89 | 4.26 | 10976 | 1170 | 28 | 68 | 8 | 308 | 0 | logfile |
✘ | 7A5V | 11657 | 2022-04-06 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 13.54 | 0.02 | 0.000 | 2.35 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 6PUY | 20484 | 2022-04-05 | 2019-07-18 | 2.8 | 3.15 | 2.88 | 3.1 | 0.015 | 0.90 | 0.0 | 0.06 | 19.62 | 0.01 | 0.000 | 4.27 | 0.19 | 3.0 | 97.0 | 0.0 | -3.07 | 0.75 | 0.90 | 4.33 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 21.03 | 0.00 | 0.000 | 8.71 | 1.16 | 2.5 | 97.5 | 0.0 | 0.74 | 3.18 | 0.58 | 0.84 | 3.91 | 11784 | 1232 | 28 | 72 | 10 | 404 | 0 | logfile |
✘ | 7EFC | 31083 | 2022-04-06 | 2021-03-21 | 1.7 | 1.76 | 1.83 | 1.9 | 0.032 | 3.16 | 80.0 | 0.09 | 15.03 | 0.02 | 0.000 | 3.39 | 2.15 | 2.5 | 96.6 | 0.8 | -0.84 | 0.73 | 0.80 | 6.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20020 | 2400 | 20 | 0 | 20 | 780 | 0 | logfile |
✔ | 6PUW | 20483 | 2022-04-05 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.013 | 0.77 | 0.0 | 0.04 | 19.88 | 0.00 | 0.000 | 7.60 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | 3.1 | 0.005 | 0.58 | 0.0 | 0.04 | 21.70 | 0.00 | 0.000 | 8.17 | 1.23 | 3.2 | 96.8 | 0.0 | 0.37 | 0.36 | 0.68 | 0.90 | 4.32 | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✔ | 6SHT | 10205 | 2022-04-08 | 2019-08-08 | 2.73 | 2.88 | 2.78 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 17.80 | 0.01 | 0.000 | 10.21 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 19.60 | 0.00 | 0.000 | 5.44 | 2.24 | 1.4 | 98.3 | 0.3 | 5.07 | 1.76 | 0.72 | 0.84 | 2.18 | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✔ | 6PUZ | 20485 | 2022-04-05 | 2019-07-18 | 2.8 | 3.10 | 2.87 | 3.1 | 0.008 | 0.87 | 0.0 | 0.05 | 19.45 | 0.01 | 0.000 | 5.85 | 0.19 | 2.2 | 97.8 | 0.0 | -2.67 | 0.74 | 0.89 | 4.50 | 3.0 | 0.003 | 0.49 | 0.0 | 0.04 | 21.32 | 0.00 | 0.000 | 7.65 | 0.87 | 2.2 | 97.8 | 0.0 | 0.66 | 0.39 | 0.69 | 0.89 | 4.11 | 11702 | 1230 | 28 | 72 | 10 | 340 | 0 | logfile |
✔ | 5A9Z | 6396 | 2022-04-13 | 2015-07-23 | 4.7 | 4.83 | — | 4.7 | 0.013 | 1.89 | 26.0 | 0.14 | 23.31 | 0.03 | 0.000 | 199.39 | 29.15 | 25.1 | 49.6 | 25.2 | -7.73 | 0.81 | 0.65 | — | 4.7 | 0.007 | 1.03 | 0.0 | 0.05 | 19.42 | 0.01 | 0.000 | 40.39 | 0.19 | 21.0 | 76.7 | 2.4 | -4.44 | 2.93 | 0.87 | 0.82 | — | 150547 | 6671 | 58 | 4527 | 131 | 0 | 0 | logfile |
✘ | 7A4M | 11638 | 2022-04-14 | 2020-08-20 | 1.22 | 1.13 | 1.28 | 1.2 | 0.010 | 1.38 | 0.0 | 0.09 | 13.82 | 0.01 | 0.001 | 2.76 | 1.18 | 1.8 | 98.2 | 0.0 | 2.86 | 0.40 | 0.57 | 8.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76248 | 4128 | 24 | 0 | 48 | 2640 | 36216 | logfile |
✔ | 6ZP7 | 11337 | 2022-04-06 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.07 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.64 | 0.59 | 1.49 | 3.7 | 0.003 | 0.75 | 0.0 | 0.11 | 15.23 | 0.00 | 0.791 | 10.33 | 0.28 | 3.5 | 96.5 | 0.0 | 0.07 | 1.33 | 0.81 | 0.83 | 2.09 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 6ZP5 | 11336 | 2022-04-06 | 2020-07-08 | 3.1 | 3.90 | 3.32 | 3.6 | 0.012 | 0.83 | 0.0 | 0.15 | 13.52 | 0.01 | 0.012 | 14.20 | 0.52 | 3.0 | 97.0 | 0.0 | -0.93 | 0.67 | 0.64 | 2.54 | 3.6 | 0.004 | 0.75 | 0.0 | 0.11 | 14.99 | 0.00 | 0.787 | 10.18 | 0.40 | 3.6 | 96.4 | 0.0 | 0.24 | 0.66 | 0.82 | 0.84 | 2.27 | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2022-04-07 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.97 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.011 | 1.11 | 2.0 | 0.13 | 16.15 | 0.01 | 1.890 | 9.69 | 0.10 | 5.7 | 94.3 | 0.0 | -0.97 | 2.24 | 0.60 | 0.75 | 2.50 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 5A1A | 2984 | 2022-04-08 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.14 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.005 | 0.78 | 0.0 | 0.05 | 17.68 | 0.01 | 1.924 | 12.32 | 3.18 | 3.0 | 96.9 | 0.1 | -0.70 | 0.61 | 0.54 | 0.79 | 3.98 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✘ | 4V8Y | 2421 | 2022-04-23 | 2013-07-20 | 4.3 | 4.35 | — | 4.3 | 0.026 | 1.73 | 246.0 | 0.10 | 19.96 | 0.02 | 0.030 | 35.60 | 23.07 | 10.6 | 82.9 | 6.5 | -4.49 | 0.62 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 221288 | 12072 | 110 | 5354 | 711 | 0 | 7033 | logfile |
✔ | 6TUP | 10593 | 2022-04-06 | 2020-01-08 | 3.2 | 3.52 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.05 | 21.23 | 0.00 | 0.032 | 54.60 | 0.00 | 0.0 | 100.0 | 0.0 | -7.04 | 0.49 | 0.47 | 1.19 | 3.6 | 0.039 | 2.56 | 0.0 | 0.24 | 27.07 | 0.01 | 1.098 | 116.88 | 1.25 | 3.2 | 96.8 | 0.0 | -2.76 | 8.49 | 0.55 | 0.60 | -0.09 | 22400 | 2300 | 100 | 300 | 0 | 0 | 0 | logfile |
✔ | 5ooL | 3842 | 2022-04-09 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.15 | 0.01 | 0.037 | 6.29 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | 4.9 | 0.005 | 0.92 | 0.0 | 0.05 | 17.50 | 0.01 | 1.048 | 29.33 | 1.29 | 6.3 | 93.6 | 0.0 | -1.21 | 1.56 | 0.87 | 0.86 | 0.91 | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✔ | 7o1C | 12695 | 2022-04-12 | 2021-03-29 | 2.6 | 3.02 | 2.70 | 2.4 | 0.018 | 1.91 | 0.0 | 0.06 | 14.39 | 0.02 | 0.055 | 6.78 | 0.04 | 5.1 | 94.8 | 0.1 | -1.96 | 0.80 | 0.83 | 3.37 | 2.3 | 0.005 | 0.71 | 0.0 | 0.04 | 14.72 | 0.01 | 0.867 | 8.21 | 2.44 | 4.4 | 95.5 | 0.1 | -0.43 | 1.00 | 0.81 | 0.84 | 2.98 | 148175 | 6042 | 76 | 4638 | 489 | 800 | 0 | logfile |
✔ | 7o1A | 12694 | 2022-04-11 | 2021-03-29 | 2.4 | 2.81 | — | 2.3 | 0.014 | 1.84 | 6.0 | 0.05 | 14.10 | 0.02 | 0.059 | 5.41 | 0.04 | 3.7 | 96.3 | 0.0 | -2.95 | 0.86 | 0.87 | 3.73 | 2.2 | 0.005 | 0.69 | 0.0 | 0.04 | 14.39 | 0.01 | 1.692 | 6.98 | 2.34 | 3.5 | 96.5 | 0.0 | 0.17 | 0.99 | 0.87 | 0.89 | 3.95 | 146602 | 5694 | 96 | 4637 | 476 | 2026 | 0 | logfile |
✘ | 7EPP | 31248 | 2022-04-07 | 2021-04-27 | 2.4 | 2.51 | — | 2.6 | 0.004 | 0.67 | 0.0 | 0.04 | 16.13 | 0.01 | 0.073 | 3.23 | 3.57 | 7.3 | 92.7 | 0.0 | -2.99 | 0.59 | 0.81 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81862 | 10187 | 61 | 0 | 0 | 1830 | 0 | logfile |