Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W8o	21576	2021-12-01	2020-03-20	3.4	4.30	—	4.1	0.029	1.20	3.0	0.05	17.62	0.01	1.161	20.50	11.79	6.7	93.3	0.0	-3.22	0.57	0.81	1.49	4.2	0.005	1.02	0.0	0.05	17.24	0.00	2.046	19.56	1.19	6.5	93.2	0.2	-0.06	1.18	0.54	0.78	1.32	6332	832	2	0	0	0	0	logfile
✔	6S6T	10105	2021-12-01	2019-07-03	4.1	4.22	4.17	4.1	0.024	0.97	0.0	0.08	12.90	0.00	1.163	8.25	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	4.1	0.004	0.85	0.0	0.05	13.36	0.00	1.777	10.24	0.05	6.3	93.7	0.0	-1.30	1.53	0.74	0.84	—	56543	7304	14	0	17	0	0	logfile
✘	7PiJ	13438	2021-12-01	2021-08-20	3.47	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.49	0.51	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	3JC2	3245	2021-12-01	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✘	6ZZX	11588	2021-12-02	2020-08-05	2.7	2.80	2.77	2.8	0.024	2.76	0.0	0.12	22.18	0.02	1.178	15.55	0.00	6.0	93.8	0.2	0.75	0.75	0.88	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56369	4684	68	0	403	99	0	logfile
✘	6WTi	21897	2021-12-01	2020-05-02	2.38	2.42	—	2.5	0.010	1.20	5.0	0.07	19.47	0.01	1.179	9.07	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✘	6MG8	9111	2021-12-01	2018-09-13	3.6	3.80	3.39	3.7	0.007	1.26	2.0	0.07	11.59	0.01	1.179	38.57	3.85	7.3	92.7	0.0	-2.32	0.68	0.75	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7034	985	1	0	4	0	0	logfile
✘	7M4U	23666	2021-12-01	2021-03-22	2.71	1.78	—	1.6	0.003	0.54	2.0	0.04	14.67	0.00	1.182	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51764	2386	27	1528	84	191	0	logfile
✘	6J5T	0680	2021-12-01	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.02	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	1oED	1044	2021-12-01	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.60	0.36	—	4926	636	5	0	0	0	0	logfile
✘	6ZZY	11589	2021-12-01	2020-08-05	3.16	2.16	—	2.5	0.025	2.79	0.0	0.18	22.41	0.02	1.183	12.85	0.03	6.1	93.7	0.2	-0.33	0.57	0.76	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54609	4594	44	0	379	0	0	logfile
✘	7D1T	30547	2021-12-01	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.80	31.0	0.10	18.31	0.02	1.200	3.33	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7A5i	11644	2021-12-01	2020-08-21	3.7	2.91	3.49	3.2	0.012	1.50	10.0	0.07	19.05	0.01	1.201	7.30	0.19	10.1	89.6	0.3	-4.29	0.62	0.75	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	163843	13049	105	2698	220	0	0	logfile
✘	6CP5	7547	2021-12-01	2018-03-13	4.2	4.19	—	4.2	0.003	0.83	0.0	0.04	10.90	0.00	1.205	24.08	2.24	7.2	92.0	0.8	-4.36	0.50	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9413	1234	19	0	4	0	0	logfile
✘	6RX4	10049	2021-12-01	2019-06-07	3.3	3.78	3.21	3.8	0.007	1.09	0.0	0.06	11.44	0.01	1.205	5.39	0.14	4.5	95.5	0.0	-4.07	0.67	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✘	5XNo	6744	2021-12-01	2017-05-23	3.5	3.75	—	3.6	0.009	1.53	0.0	0.06	15.59	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.79	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	7E0K	30935	2021-12-01	2021-01-28	3.09	2.58	—	3.1	0.010	1.45	0.0	0.05	18.57	0.02	1.210	8.40	0.00	7.2	92.8	0.0	-3.05	0.62	0.82	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8044	677	6	0	58	0	0	logfile
✘	7E0H	30932	2021-12-01	2021-01-28	3.75	3.80	—	3.7	0.006	1.52	0.0	0.05	18.52	0.02	1.210	11.19	0.00	9.0	91.0	0.0	-3.64	0.68	0.76	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8017	661	6	0	57	0	0	logfile
✘	5XNN	6743	2021-12-01	2017-05-23	3.6	3.63	—	3.6	0.007	1.44	0.0	0.06	15.66	0.02	1.211	7.54	0.00	4.3	95.6	0.1	-2.86	0.57	0.79	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	7E0J	30934	2021-12-01	2021-01-28	3.13	2.94	—	3.1	0.006	1.35	0.0	0.06	18.34	0.02	1.214	7.02	0.97	5.0	95.0	0.0	-2.78	0.59	0.81	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8140	672	6	0	56	0	0	logfile

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