The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LKi | 4068 | 2023-02-22 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.38 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.17 | 0.00 | 2.098 | 14.63 | 0.60 | 6.9 | 92.8 | 0.4 | 0.27 | 0.81 | 0.63 | 0.80 | 1.67 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2023-02-19 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.37 | 5.0 | 0.18 | 17.76 | 0.01 | 0.584 | 27.83 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 17.40 | 0.00 | 2.161 | 11.65 | 0.42 | 6.6 | 93.1 | 0.4 | 0.00 | 0.66 | 0.46 | 0.76 | 1.19 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |
✔ | 5o4U | 3746 | 2023-02-25 | 2017-05-31 | 4.2 | 4.27 | 4.23 | 4.3 | 0.007 | 1.26 | 2.0 | 0.08 | 11.28 | 0.01 | 0.586 | 15.82 | 1.75 | 17.3 | 82.7 | 0.0 | -4.67 | 0.39 | 0.70 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.06 | 12.52 | 0.01 | 2.119 | 19.27 | 0.04 | 17.3 | 82.7 | 0.0 | -3.04 | 1.34 | 0.45 | 0.76 | — | 24528 | 3312 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PBX | 13308 | 2023-02-23 | 2021-08-02 | 3.43 | 3.70 | 3.43 | 3.1 | 0.032 | 2.53 | 206.0 | 0.21 | 19.43 | 0.02 | 0.597 | 32.75 | 11.71 | 3.1 | 95.3 | 1.6 | 1.29 | 0.69 | 0.65 | 1.83 | 3.1 | 0.007 | 1.29 | 25.0 | 0.07 | 17.51 | 0.01 | 1.542 | 33.85 | 0.34 | 3.1 | 96.3 | 0.6 | 0.95 | 1.28 | 0.90 | 0.86 | 1.97 | 59472 | 8015 | 35 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2023-02-18 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 15.45 | 0.01 | 2.183 | 9.17 | 0.63 | 8.8 | 91.2 | 0.0 | -2.39 | 1.57 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2023-02-24 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.68 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.003 | 0.86 | 0.0 | 0.04 | 17.35 | 0.00 | 2.093 | 16.19 | 0.38 | 4.8 | 94.7 | 0.5 | 0.66 | 3.20 | 0.89 | 0.84 | 1.24 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 5LMX | 4088 | 2023-02-27 | 2016-08-02 | 4.9 | 5.64 | — | 4.9 | 0.011 | 1.55 | 0.0 | 0.06 | 18.69 | 0.01 | 0.614 | 16.48 | 8.43 | 6.5 | 92.9 | 0.6 | -2.70 | 0.80 | 0.62 | — | 4.9 | 0.004 | 0.75 | 0.0 | 0.04 | 14.51 | 0.01 | 2.036 | 19.26 | 0.00 | 4.3 | 95.6 | 0.1 | -0.60 | 1.41 | 0.88 | 0.80 | — | 31118 | 3918 | 19 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PBJ | 13293 | 2023-02-23 | 2021-08-02 | 3.4 | 3.54 | 3.40 | 3.2 | 0.018 | 2.20 | 140.0 | 0.13 | 19.50 | 0.01 | 0.650 | 29.74 | 11.71 | 2.5 | 96.9 | 0.6 | 1.69 | 0.71 | 0.67 | 2.07 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 17.42 | 0.00 | 1.896 | 14.50 | 0.24 | 3.7 | 96.3 | 0.1 | 0.78 | 2.34 | 0.89 | 0.86 | 2.01 | 59486 | 8015 | 42 | 0 | 28 | 14 | 0 | logfile |
✔ | 6N1H | 8902 | 2023-02-20 | 2018-11-08 | 3.17 | 3.22 | — | 3.2 | 0.006 | 1.13 | 0.0 | 0.06 | 12.23 | 0.01 | 0.657 | 31.61 | 3.97 | 7.4 | 92.6 | 0.0 | -7.22 | 0.39 | 0.46 | 0.05 | 3.2 | 0.003 | 0.74 | 0.0 | 0.04 | 17.47 | 0.00 | 2.143 | 11.92 | 2.70 | 7.2 | 92.8 | 0.0 | 1.00 | 4.76 | 0.63 | 0.84 | 1.82 | 10991 | 1328 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QX7 | 4662 | 2023-02-25 | 2019-03-07 | 3.8 | 3.98 | — | 3.9 | 0.006 | 1.16 | 0.0 | 0.06 | 11.55 | 0.01 | 0.726 | 11.76 | 1.75 | 14.3 | 84.1 | 1.6 | -4.94 | 0.63 | 0.59 | 1.19 | 3.9 | 0.004 | 0.94 | 0.0 | 0.05 | 17.09 | 0.01 | 2.061 | 21.16 | 0.77 | 15.3 | 84.3 | 0.4 | -2.07 | 1.16 | 0.66 | 0.59 | 0.63 | 25164 | 3072 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6T7A | 10391 | 2023-02-19 | 2019-10-21 | 3.7 | 4.20 | 3.60 | 3.7 | 0.006 | 0.87 | 0.0 | 0.05 | 25.96 | 0.01 | 0.733 | 6.61 | 0.00 | 1.8 | 98.1 | 0.1 | -3.03 | 0.85 | 0.81 | 1.66 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 26.57 | 0.00 | 2.152 | 16.37 | 1.40 | 2.5 | 97.5 | 0.0 | 2.32 | 1.74 | 0.87 | 0.85 | 1.25 | 10338 | 847 | 11 | 190 | 0 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2023-02-21 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 9.28 | 0.00 | 2.033 | 7.63 | 0.00 | 11.1 | 88.8 | 0.1 | -1.16 | 0.53 | 0.72 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✘ | 7DX4 | 30895 | 2023-02-18 | 2021-01-18 | 3.6 | 3.96 | — | 3.8 | 0.007 | 0.99 | 0.0 | 0.06 | 10.06 | 0.01 | 0.766 | 7.21 | 0.23 | 6.0 | 93.7 | 0.3 | -4.20 | 0.71 | 0.79 | 3.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8234 | 1027 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 6XRE | 22294 | 2023-02-27 | 2020-07-12 | 4.6 | 7.52 | — | 4.5 | 0.011 | 1.16 | 1.0 | 0.07 | 10.73 | 0.01 | 0.771 | 5.14 | 0.24 | 7.9 | 91.5 | 0.6 | -3.72 | 0.62 | 0.29 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 11.99 | 0.01 | 1.838 | 19.43 | 0.00 | 14.8 | 85.2 | 0.0 | -2.98 | 0.93 | 0.85 | 0.65 | — | 68542 | 4289 | 18 | 0 | 9 | 0 | 34248 | logfile |
✔ | 5N8Y | 3602 | 2023-02-24 | 2017-02-24 | 4.7 | 4.76 | — | 4.7 | 0.017 | 2.39 | 6.0 | 0.08 | 7.59 | 0.01 | 0.788 | 16.57 | 0.00 | 4.2 | 94.4 | 1.4 | -1.65 | 0.65 | 0.64 | — | 4.7 | 0.003 | 0.79 | 0.0 | 0.04 | 5.73 | 0.00 | 2.234 | 3.43 | 0.00 | 9.5 | 90.4 | 0.0 | -1.95 | 3.82 | 0.74 | 0.79 | — | 23514 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2023-02-21 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 10.78 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 15.38 | 0.00 | 2.174 | 10.83 | 0.60 | 2.9 | 97.0 | 0.1 | 0.06 | 0.89 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✔ | 6W4o | 21535 | 2023-02-26 | 2020-03-11 | 4.8 | 5.05 | 4.72 | 4.7 | 0.004 | 0.77 | 1.0 | 0.05 | 10.85 | 0.00 | 0.834 | 15.75 | 0.91 | 3.0 | 96.7 | 0.2 | -1.53 | 0.83 | 0.70 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.05 | 12.85 | 0.00 | 2.113 | 20.94 | 0.00 | 2.5 | 97.4 | 0.2 | 0.60 | 1.60 | 0.89 | 0.82 | — | 14475 | 1789 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UGP | 26493 | 2023-02-25 | 2022-03-25 | 4.2 | 3.87 | 4.16 | 3.5 | 0.006 | 0.95 | 1.0 | 0.07 | 13.84 | 0.01 | 0.835 | 6.48 | 0.52 | 6.7 | 93.3 | 0.0 | -4.45 | 0.81 | 0.72 | — | 3.5 | 0.007 | 0.84 | 0.0 | 0.05 | 13.64 | 0.01 | 2.065 | 17.35 | 0.00 | 10.0 | 90.0 | 0.0 | -2.63 | 2.09 | 0.85 | 0.79 | — | 25047 | 3096 | 34 | 0 | 66 | 0 | 0 | logfile |
✔ | 7UGN | 26490 | 2023-02-25 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.002 | 0.54 | 0.0 | 0.18 | 13.19 | 0.01 | 0.844 | 6.76 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.5 | 0.003 | 0.62 | 0.0 | 0.05 | 15.54 | 0.00 | 2.221 | 7.56 | 0.37 | 4.8 | 95.2 | 0.0 | -1.63 | 1.00 | 0.84 | 0.88 | 2.41 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2023-02-25 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.004 | 0.85 | 0.0 | 0.04 | 17.10 | 0.00 | 2.084 | 16.34 | 0.45 | 5.7 | 93.9 | 0.4 | 0.75 | 3.18 | 0.89 | 0.84 | 1.24 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |