Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3JB8	6382	2021-08-24	2015-08-04	3.6	3.59	—	96.0	0.011	1.54	0.0	0.07	11.99	0.01	0.235	173.86	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✔	6V4J	21041	2021-08-09	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.09	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.012	1.23	1.0	0.04	16.82	0.01	2.001	20.17	3.67	5.7	94.3	0.0	-1.80	1.54	0.50	0.52	1.64	20637	2697	8	0	0	0	0	logfile
✘	5UCY	8539	2021-08-09	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	88.61	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	5FYW	3378	2021-08-11	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	16.78	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.006	0.81	0.0	0.04	14.56	0.01	1.964	24.80	0.02	6.9	92.9	0.2	-0.04	2.93	0.83	0.82	—	41710	5176	30	94	11	0	0	logfile
✔	6oLG	0601	2021-08-17	2019-04-16	3.4	3.49	3.45	3.4	0.006	1.05	2.0	0.05	15.40	0.01	0.250	8.14	1.48	9.3	89.8	0.9	-3.80	0.68	0.76	1.55	3.4	0.006	0.80	1.0	0.04	17.12	0.01	1.262	16.57	0.29	10.5	89.3	0.2	-1.77	2.03	0.70	0.81	1.38	216796	11777	101	5688	332	0	0	logfile
✔	7NVG	12603	2021-08-24	2021-03-15	3.7	2.53	3.64	2.6	0.007	0.73	0.0	0.05	15.21	0.00	0.251	24.19	0.80	6.8	93.2	0.1	-0.02	0.67	0.74	1.02	2.5	0.009	0.83	6.0	0.04	16.58	0.00	1.835	18.18	0.11	5.7	94.2	0.0	0.23	2.01	0.68	0.76	1.03	246311	32750	147	0	0	0	0	logfile
✔	6ZXD	11517	2021-08-11	2020-07-29	3.2	3.08	3.17	3.1	0.007	0.94	0.0	0.05	16.74	0.01	0.254	5.74	0.21	7.2	92.6	0.2	-3.93	0.76	0.76	2.67	3.1	0.004	0.65	0.0	0.04	17.03	0.00	2.038	8.99	0.26	5.0	94.9	0.1	-0.89	1.18	0.77	0.79	2.06	80922	5944	39	1645	2	0	0	logfile
✔	6G51	4350	2021-08-11	2018-03-28	4.1	4.42	—	4.0	0.007	1.44	22.0	0.10	21.21	0.00	0.264	3.75	0.00	7.0	92.3	0.8	-2.90	0.71	0.63	—	4.0	0.008	1.15	0.0	0.05	23.60	0.01	1.948	16.27	0.00	14.6	85.3	0.1	-2.71	2.16	0.81	0.70	—	50662	6237	38	1659	0	0	0	logfile
✔	6CB1	7445	2021-08-10	2018-02-01	4.6	4.77	—	4.6	0.006	1.02	0.0	0.06	16.94	0.00	0.266	5.93	0.00	5.0	94.8	0.1	-2.68	0.66	0.49	—	4.5	0.003	0.76	0.0	0.04	18.77	0.00	1.952	19.67	0.00	10.6	89.3	0.0	-1.86	2.56	0.75	0.76	—	69945	6459	42	1615	694	0	0	logfile
✔	5NGM	3640	2021-08-12	2017-03-18	2.9	3.05	—	3.0	0.006	0.86	0.0	0.05	17.23	0.01	0.270	7.58	0.81	8.3	91.7	0.0	-4.79	0.70	0.72	2.80	3.0	0.008	0.79	0.0	0.05	17.94	0.01	1.826	12.77	4.09	8.7	91.3	0.0	-2.41	0.70	0.80	0.87	2.46	140965	5610	57	4559	205	0	0	logfile
✘	3J5Q	5776	2021-08-08	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	102.90	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✔	3J7N	6000	2021-08-17	2014-07-18	3.8	3.16	—	3.9	0.014	1.65	120.0	0.11	11.81	0.01	0.277	35.08	1.88	11.4	85.9	2.8	-1.51	0.73	0.78	2.08	3.3	0.037	0.93	0.0	0.05	17.67	0.01	2.130	17.45	1.01	5.7	93.3	1.0	-1.25	1.85	0.71	0.79	1.71	217080	28680	180	0	0	0	0	logfile
✔	6FTi	4316	2021-08-17	2018-02-22	4.2	4.31	—	4.2	0.011	1.40	18.0	0.10	19.92	0.01	0.284	11.94	11.77	9.8	87.8	2.4	-4.07	0.61	0.61	—	4.2	0.006	0.91	0.0	0.05	18.27	0.01	1.550	32.36	0.01	10.2	89.2	0.5	-1.95	1.67	0.64	0.67	—	153850	8349	75	4014	399	0	0	logfile
✔	6ZTP	11423	2021-08-09	2020-07-20	3.0	2.63	3.07	2.9	0.013	1.12	0.0	0.06	16.31	0.02	0.284	6.43	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.80	2.9	0.006	0.75	0.0	0.04	15.85	0.01	1.067	10.86	2.89	4.4	95.6	0.1	-0.19	2.17	0.82	0.88	2.44	172846	8886	79	4793	491	0	0	logfile
✔	6SMH	10235	2021-08-11	2019-08-21	4.3	4.36	—	4.3	0.009	1.34	2.0	0.07	17.19	0.04	0.292	53.42	14.61	12.0	85.8	2.2	-4.97	0.68	0.79	—	4.3	0.005	0.87	0.0	0.05	14.17	0.01	2.067	21.20	0.05	11.5	88.2	0.3	-2.01	2.74	0.69	0.81	—	39744	5025	16	0	0	0	0	logfile
✔	6U5T	20655	2021-08-09	2019-08-28	2.9	3.84	—	3.3	0.012	0.83	0.0	0.05	14.37	0.01	0.294	36.11	0.07	14.7	85.2	0.1	-5.87	0.87	0.81	2.18	3.3	0.004	0.83	0.0	0.05	16.29	0.00	1.983	16.95	2.33	5.1	94.9	0.0	-0.57	1.72	0.88	0.83	1.95	169398	21894	24	0	12	0	0	logfile
✔	6N1R	9318	2021-08-11	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.74	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.004	0.79	0.0	0.05	12.92	0.00	2.142	18.19	0.50	7.0	93.0	0.0	0.19	0.84	0.83	0.78	—	46044	5796	12	0	0	0	0	logfile
✔	6ZTJ	11418	2021-08-10	2020-07-20	3.4	3.44	3.74	3.4	0.012	1.14	0.0	0.07	16.58	0.02	0.298	8.22	6.84	6.6	92.7	0.8	-2.31	0.78	0.76	0.84	3.4	0.005	0.77	1.0	0.04	16.02	0.01	1.131	16.60	0.30	6.0	94.0	0.0	-0.51	1.95	0.80	0.80	0.68	176970	9394	80	4806	483	0	0	logfile
✔	3JC5	6535	2021-08-11	2015-11-24	4.7	5.02	—	4.8	0.009	1.55	5.0	0.06	12.17	0.01	0.300	45.49	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	4.8	0.003	0.93	0.0	0.05	13.26	0.00	2.028	21.35	0.02	9.3	89.9	0.8	-1.20	1.93	0.84	0.79	—	40041	5039	11	0	0	0	0	logfile
✔	3JAJ	3037	2021-08-21	2015-06-16	3.75	3.82	3.77	3.8	0.013	1.90	339.0	0.13	23.43	0.02	0.312	55.05	20.83	14.7	79.8	5.5	-5.44	0.74	0.80	0.72	3.8	0.004	0.74	1.0	0.04	18.78	0.01	2.006	14.92	0.71	9.0	90.0	1.0	-1.77	1.69	0.75	0.82	1.03	228197	12521	100	5958	193	0	0	logfile

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