Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LKi	4068	2023-02-22	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.38	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.17	0.00	2.098	14.63	0.60	6.9	92.8	0.4	0.27	0.81	0.63	0.80	1.67	55415	7135	5	0	0	0	0	logfile
✔	6UZ0	20949	2023-02-19	2019-11-14	3.24	3.60	—	3.6	0.022	1.37	5.0	0.18	17.76	0.01	0.584	27.83	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.003	0.73	0.0	0.04	17.40	0.00	2.161	11.65	0.42	6.6	93.1	0.4	0.00	0.66	0.46	0.76	1.19	9557	1138	5	0	26	0	0	logfile
✔	5o4U	3746	2023-02-25	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	15.82	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.004	0.85	0.0	0.06	12.52	0.01	2.119	19.27	0.04	17.3	82.7	0.0	-3.04	1.34	0.45	0.76	—	24528	3312	16	0	0	0	0	logfile
✔	7PBX	13308	2023-02-23	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.1	0.007	1.29	25.0	0.07	17.51	0.01	1.542	33.85	0.34	3.1	96.3	0.6	0.95	1.28	0.90	0.86	1.97	59472	8015	35	0	28	0	0	logfile
✔	7WCo	32426	2023-02-18	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.004	0.79	0.0	0.05	15.45	0.01	2.183	9.17	0.63	8.8	91.2	0.0	-2.39	1.57	0.56	0.85	2.86	8950	1195	15	0	0	0	0	logfile
✔	5G05	3388	2023-02-24	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.68	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.86	0.0	0.04	17.35	0.00	2.093	16.19	0.38	4.8	94.7	0.5	0.66	3.20	0.89	0.84	1.24	63181	8027	21	0	3	0	0	logfile
✔	5LMX	4088	2023-02-27	2016-08-02	4.9	5.64	—	4.9	0.011	1.55	0.0	0.06	18.69	0.01	0.614	16.48	8.43	6.5	92.9	0.6	-2.70	0.80	0.62	—	4.9	0.004	0.75	0.0	0.04	14.51	0.01	2.036	19.26	0.00	4.3	95.6	0.1	-0.60	1.41	0.88	0.80	—	31118	3918	19	0	6	0	0	logfile
✔	7PBJ	13293	2023-02-23	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.004	0.70	0.0	0.04	17.42	0.00	1.896	14.50	0.24	3.7	96.3	0.1	0.78	2.34	0.89	0.86	2.01	59486	8015	42	0	28	14	0	logfile
✔	6N1H	8902	2023-02-20	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	31.61	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.74	0.0	0.04	17.47	0.00	2.143	11.92	2.70	7.2	92.8	0.0	1.00	4.76	0.63	0.84	1.82	10991	1328	16	0	0	0	0	logfile
✔	6QX7	4662	2023-02-25	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.004	0.94	0.0	0.05	17.09	0.01	2.061	21.16	0.77	15.3	84.3	0.4	-2.07	1.16	0.66	0.59	0.63	25164	3072	12	0	0	0	0	logfile
✔	6T7A	10391	2023-02-19	2019-10-21	3.7	4.20	3.60	3.7	0.006	0.87	0.0	0.05	25.96	0.01	0.733	6.61	0.00	1.8	98.1	0.1	-3.03	0.85	0.81	1.66	3.7	0.005	0.76	0.0	0.04	26.57	0.00	2.152	16.37	1.40	2.5	97.5	0.0	2.32	1.74	0.87	0.85	1.25	10338	847	11	190	0	0	0	logfile
✔	6Y50	10688	2023-02-21	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.003	0.63	0.0	0.04	9.28	0.00	2.033	7.63	0.00	11.1	88.8	0.1	-1.16	0.53	0.72	0.73	—	14916	2537	10	50	3	0	0	logfile
✘	7DX4	30895	2023-02-18	2021-01-18	3.6	3.96	—	3.8	0.007	0.99	0.0	0.06	10.06	0.01	0.766	7.21	0.23	6.0	93.7	0.3	-4.20	0.71	0.79	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8234	1027	6	0	5	0	0	logfile
✔	6XRE	22294	2023-02-27	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.14	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.75	0.0	0.04	11.99	0.01	1.838	19.43	0.00	14.8	85.2	0.0	-2.98	0.93	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	5N8Y	3602	2023-02-24	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.79	0.0	0.04	5.73	0.00	2.234	3.43	0.00	9.5	90.4	0.0	-1.95	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	3JB7	6404	2023-02-21	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.70	0.0	0.04	15.38	0.00	2.174	10.83	0.60	2.9	97.0	0.1	0.06	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	6W4o	21535	2023-02-26	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.75	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.004	0.77	0.0	0.05	12.85	0.00	2.113	20.94	0.00	2.5	97.4	0.2	0.60	1.60	0.89	0.82	—	14475	1789	13	0	0	0	0	logfile
✔	7UGP	26493	2023-02-25	2022-03-25	4.2	3.87	4.16	3.5	0.006	0.95	1.0	0.07	13.84	0.01	0.835	6.48	0.52	6.7	93.3	0.0	-4.45	0.81	0.72	—	3.5	0.007	0.84	0.0	0.05	13.64	0.01	2.065	17.35	0.00	10.0	90.0	0.0	-2.63	2.09	0.85	0.79	—	25047	3096	34	0	66	0	0	logfile
✔	7UGN	26490	2023-02-25	2022-03-25	3.4	3.60	3.35	3.4	0.002	0.54	0.0	0.18	13.19	0.01	0.844	6.76	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.5	0.003	0.62	0.0	0.05	15.54	0.00	2.221	7.56	0.37	4.8	95.2	0.0	-1.63	1.00	0.84	0.88	2.41	25698	3150	49	0	87	0	0	logfile
✔	4Ui9	2924	2023-02-25	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.004	0.85	0.0	0.04	17.10	0.00	2.084	16.34	0.45	5.7	93.9	0.4	0.75	3.18	0.89	0.84	1.24	66453	8472	25	0	5	0	0	logfile

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