Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SPG	10285	2023-07-16	2019-09-01	3.34	3.45	—	3.4	0.007	0.91	0.0	0.05	16.43	0.01	0.514	3.96	0.30	8.6	91.4	0.0	-5.03	0.84	0.81	2.64	3.4	0.005	0.72	0.0	0.04	17.07	0.01	1.832	9.45	0.61	8.9	91.1	0.0	-2.69	0.66	0.87	0.86	2.05	141963	5779	58	4526	172	0	0	logfile
✔	8CKW	16704	2023-07-07	2023-02-16	3.12	3.53	3.07	3.4	0.005	0.87	0.0	0.08	12.55	0.01	0.523	4.81	0.00	0.0	100.0	0.0	-0.70	0.57	0.82	3.51	3.4	0.003	0.62	0.0	0.04	17.24	0.00	2.211	11.20	0.27	1.1	98.9	0.0	1.42	1.20	0.58	0.85	1.95	13890	1785	15	0	0	0	0	logfile
✘	7RL5	24516	2023-07-11	2021-07-23	3.8	3.61	—	3.8	0.013	2.04	24.0	0.11	16.71	0.02	0.524	3.05	2.05	3.3	96.3	0.4	-1.86	0.40	0.52	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106032	6708	24	0	24	0	52716	logfile
✔	5iYD	8138	2023-07-19	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.15	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.005	0.98	0.0	0.05	19.19	0.01	1.852	23.09	0.73	8.6	90.7	0.7	-1.08	1.15	0.79	0.80	1.05	46709	5407	31	166	13	0	0	logfile
✔	6QX9	4665	2023-07-15	2019-03-07	3.28	3.33	—	3.3	0.011	1.31	35.0	0.08	16.06	0.01	0.530	12.89	2.29	5.5	94.1	0.3	-3.26	0.46	0.51	1.65	3.3	0.003	0.67	0.0	0.04	16.72	0.00	1.902	14.77	0.23	4.6	95.3	0.0	-0.27	0.86	0.50	0.60	1.55	137494	15560	77	565	36	0	0	logfile
✔	7T76	25735	2023-07-08	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	10.62	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.70	0.0	0.05	12.69	0.00	1.066	11.99	0.00	5.1	94.9	0.0	-0.35	1.89	0.81	0.81	—	16587	1934	42	0	104	0	0	logfile
✔	6R1U	4705	2023-07-09	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	11.98	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.004	0.64	0.0	0.04	25.40	0.00	2.023	15.41	0.00	2.9	97.0	0.1	0.92	1.09	0.89	0.77	—	18394	1550	14	294	4	0	0	logfile
✔	6YAN	10762	2023-07-14	2020-03-12	3.48	3.56	—	3.5	0.018	2.03	24.0	0.13	15.70	0.02	0.554	3.68	1.68	9.0	87.4	3.6	-4.09	0.71	0.66	1.43	3.5	0.008	0.86	0.0	0.04	16.82	0.01	2.038	10.68	0.79	9.9	89.9	0.2	-1.98	1.84	0.82	0.85	1.93	84251	5610	39	1855	0	0	0	logfile
✔	6F07	4163	2023-07-05	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.69	0.0	0.04	15.52	0.00	2.155	11.17	0.18	4.4	95.6	0.0	0.99	1.53	0.56	0.70	0.72	10149	1227	4	0	2	0	0	logfile
✔	6TAT	10427	2023-07-04	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.03	0.00	2.263	6.15	0.68	6.4	93.6	0.0	0.32	0.56	0.61	0.78	1.33	6790	820	5	0	0	0	0	logfile
✔	6o6C	0633	2023-07-14	2019-03-05	3.1	3.26	—	3.2	0.011	1.23	0.0	0.05	12.34	0.01	0.570	3.74	0.09	6.7	90.7	2.5	-1.64	0.83	0.81	2.51	3.2	0.003	0.70	0.0	0.04	16.01	0.00	1.992	11.50	0.37	5.9	93.7	0.4	-0.39	2.17	0.84	0.84	2.05	30166	3660	19	52	9	0	0	logfile
✔	8SEZ	40434	2023-07-10	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.60	0.0	0.04	16.08	0.01	2.104	9.63	0.45	3.2	96.6	0.2	1.87	0.61	0.57	0.78	2.05	20580	2508	8	4	4	0	0	logfile
✔	5LKi	4068	2023-07-04	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.83	0.0	0.04	15.10	0.00	2.088	15.46	0.70	7.1	92.5	0.4	0.24	0.81	0.63	0.80	1.65	55415	7135	5	0	0	0	0	logfile
✔	6UZ0	20949	2023-07-05	2019-11-14	3.24	3.60	—	3.6	0.022	1.38	5.0	0.18	17.79	0.01	0.584	27.88	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.004	0.77	0.0	0.04	17.62	0.00	2.151	12.64	0.42	6.8	92.8	0.4	-0.08	0.66	0.46	0.77	1.04	9557	1138	5	0	26	0	0	logfile
✔	6N30	9335	2023-07-16	2018-11-14	3.2	3.45	3.17	3.4	0.011	1.27	10.0	0.07	10.68	0.01	0.590	11.87	0.78	4.1	95.8	0.2	-2.69	0.63	0.73	4.10	3.4	0.005	0.76	0.0	0.05	13.91	0.00	1.862	11.64	0.32	3.8	96.2	0.0	0.48	1.20	0.71	0.85	3.10	34851	4694	27	0	26	0	0	logfile
✔	7PBX	13308	2023-07-05	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.004	0.77	0.0	0.05	17.15	0.00	1.823	14.67	0.32	4.7	95.3	0.1	1.26	1.42	0.90	0.87	2.10	59472	8015	35	0	28	0	0	logfile
✔	7WCo	32426	2023-07-05	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.004	0.79	0.0	0.05	15.45	0.01	2.183	9.17	0.63	8.8	91.2	0.0	-2.39	1.57	0.56	0.85	2.86	8950	1195	15	0	0	0	0	logfile
✔	5NP6	3618	2023-07-21	2017-04-13	3.6	4.23	3.52	3.6	0.004	0.66	0.0	0.06	15.49	0.02	0.612	13.59	0.00	14.9	84.5	0.6	-4.69	0.90	0.87	2.11	3.6	0.004	0.74	0.0	0.04	16.14	0.01	1.947	16.57	0.72	9.0	90.5	0.5	-1.53	1.66	0.92	0.90	1.66	146883	5995	57	4667	0	0	0	logfile
✔	5G05	3388	2023-07-06	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	7NAT	12247	2023-07-20	2021-01-25	3.59	4.72	3.68	2.6	0.009	0.84	6.0	0.05	15.94	0.02	0.616	27.68	0.00	7.4	92.6	0.0	-3.28	0.90	0.81	0.72	2.5	0.004	0.69	0.0	0.03	16.22	0.01	1.845	26.16	0.52	4.7	95.3	0.0	-1.07	1.32	0.92	0.87	0.63	50921	2562	25	1430	66	0	0	logfile

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