Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6T63	10383	2022-12-16	2019-10-17	3.8	3.80	—	3.8	0.005	0.85	0.0	0.05	15.28	0.01	0.439	4.46	0.00	7.1	92.6	0.3	-3.77	0.52	0.79	2.11	3.8	0.004	0.78	0.0	0.05	18.15	0.00	2.101	12.37	0.68	6.8	93.1	0.1	1.14	1.70	0.53	0.81	1.61	30978	3906	18	0	0	0	0	logfile
✘	6i1X	0326	2022-12-19	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54915	7290	15	0	0	0	0	logfile
✔	7B70	12063	2022-12-13	2020-12-09	4.0	4.08	—	3.4	0.008	1.13	3.0	0.06	15.94	0.01	0.463	43.42	4.66	11.9	87.8	0.2	-2.44	0.79	0.66	—	3.2	0.003	0.83	0.0	0.04	16.40	0.00	2.162	27.00	0.32	7.4	92.5	0.0	-0.88	0.94	0.82	0.76	—	17084	2112	10	0	0	0	0	logfile
✔	7SSZ	25417	2022-12-13	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.61	0.0	0.04	15.30	0.00	2.218	6.19	0.12	3.7	96.3	0.0	1.07	1.05	0.70	0.84	3.34	15283	1908	9	0	3	0	0	logfile
✔	6XJA	22204	2022-12-13	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.12	18.04	0.01	0.468	73.79	18.43	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.004	0.83	0.0	0.04	16.65	0.01	2.093	25.14	0.52	8.7	91.1	0.2	-2.40	2.55	0.75	0.67	—	16441	2156	5	0	0	0	0	logfile
✔	5Y4o	6805	2022-12-12	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.004	0.79	0.0	0.04	17.52	0.00	2.091	15.78	1.12	7.4	91.9	0.7	-0.14	1.76	0.59	0.73	1.43	12341	1561	7	0	0	0	0	logfile
✔	5oA1	3727	2022-12-21	2017-06-20	4.4	5.36	—	4.5	0.027	1.76	1.0	0.07	19.15	0.01	0.473	26.45	8.67	5.4	93.4	1.2	-1.92	0.70	0.49	—	4.6	0.012	0.87	0.0	0.05	15.81	0.01	1.979	31.14	0.00	6.5	93.3	0.2	-0.43	3.31	0.78	0.66	—	43459	5668	39	105	7	0	0	logfile
✔	5M3F	4147	2022-12-18	2016-10-14	3.8	3.88	3.92	3.9	0.006	0.89	0.0	0.05	11.59	0.01	0.477	14.45	1.14	6.6	93.1	0.3	-3.19	0.59	0.74	2.61	3.9	0.003	0.69	0.0	0.04	15.96	0.00	1.983	9.86	0.30	4.2	95.8	0.0	-0.93	1.67	0.64	0.79	1.69	34032	4161	22	47	8	0	0	logfile
✔	7TQL	26067	2022-12-15	2022-01-26	3.2	2.54	3.55	2.8	0.012	1.50	15.0	0.11	16.04	0.00	0.514	4.16	1.16	6.6	92.8	0.6	-2.65	0.71	0.76	2.00	2.9	0.005	0.72	0.0	0.04	17.08	0.01	2.067	12.92	0.97	5.8	94.2	0.1	-0.78	0.51	0.79	0.80	1.69	80976	5508	43	1731	5	0	0	logfile
✔	5iYD	8138	2022-12-22	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.33	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.004	0.96	0.0	0.05	19.31	0.01	1.944	21.96	0.65	8.1	91.3	0.6	-1.04	1.16	0.79	0.80	0.95	46709	5407	31	166	13	0	0	logfile
✔	7T76	25735	2022-12-13	2021-12-14	4.43	4.68	4.39	4.5	0.021	1.95	2.0	0.14	10.42	0.02	0.530	1.50	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.69	0.0	0.05	12.49	0.00	0.921	13.06	0.00	5.4	94.6	0.1	-0.60	1.89	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	6R1U	4705	2022-12-14	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	12.09	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.003	0.66	0.0	0.04	25.35	0.00	2.074	12.99	0.00	2.6	97.2	0.1	0.91	1.09	0.89	0.78	—	18394	1550	14	294	4	0	0	logfile
✔	6YAN	10762	2022-12-16	2020-03-12	3.48	3.56	—	3.5	0.018	2.02	24.0	0.13	15.58	0.02	0.554	3.68	1.68	9.0	87.4	3.6	-4.09	0.71	0.66	1.43	3.5	0.003	0.67	0.0	0.04	16.37	0.00	2.097	9.02	0.46	7.8	92.1	0.1	-1.55	1.83	0.82	0.85	1.68	84251	5610	39	1855	0	0	0	logfile
✔	6F07	4163	2022-12-12	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.81	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.003	0.61	0.0	0.04	15.26	0.00	2.139	9.62	0.00	3.8	96.2	0.0	1.25	1.51	0.55	0.69	0.79	10149	1227	4	0	2	0	0	logfile
✔	6SFX	10162	2022-12-14	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	24.28	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.004	0.90	0.0	0.05	18.06	0.00	2.068	23.27	0.60	4.9	95.1	0.0	-0.75	1.52	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	6TAT	10427	2022-12-11	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.59	0.0	0.04	17.81	0.00	2.269	6.15	0.27	7.2	92.8	0.0	0.33	0.57	0.62	0.78	1.37	6790	820	5	0	0	0	0	logfile
✔	6RiB	4887	2022-12-13	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.004	0.87	0.0	0.05	14.18	0.00	2.098	20.67	0.00	10.8	89.2	0.0	-5.32	1.95	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	6o6C	0633	2022-12-16	2019-03-05	3.1	3.26	—	3.2	0.011	1.23	0.0	0.05	12.23	0.01	0.570	4.18	0.09	6.7	90.7	2.5	-1.64	0.83	0.81	2.51	3.2	0.003	0.68	0.0	0.04	16.00	0.00	2.010	11.15	0.16	5.4	94.1	0.4	-0.26	2.17	0.84	0.83	1.95	30166	3660	19	52	9	0	0	logfile
✔	5LKi	4068	2022-12-11	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.63	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.10	0.00	2.086	15.11	0.39	6.9	92.7	0.4	0.29	0.82	0.63	0.80	1.58	55415	7135	5	0	0	0	0	logfile
✔	6UZ0	20949	2022-12-12	2019-11-14	3.24	3.60	—	3.6	0.022	1.37	5.0	0.18	17.76	0.01	0.584	27.88	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.003	0.72	0.0	0.04	17.48	0.00	2.176	12.07	0.42	6.8	92.9	0.3	-0.28	0.67	0.46	0.76	1.51	9557	1138	5	0	26	0	0	logfile

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