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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6SPG | 10285 | 2023-07-16 | 2019-09-01 | 3.34 | 3.45 | — | 3.4 | 0.007 | 0.91 | 0.0 | 0.05 | 16.43 | 0.01 | 0.514 | 3.96 | 0.30 | 8.6 | 91.4 | 0.0 | -5.03 | 0.84 | 0.81 | 2.64 | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.07 | 0.01 | 1.832 | 9.45 | 0.61 | 8.9 | 91.1 | 0.0 | -2.69 | 0.66 | 0.87 | 0.86 | 2.05 | 141963 | 5779 | 58 | 4526 | 172 | 0 | 0 | logfile |
✔ | 8CKW | 16704 | 2023-07-07 | 2023-02-16 | 3.12 | 3.53 | 3.07 | 3.4 | 0.005 | 0.87 | 0.0 | 0.08 | 12.55 | 0.01 | 0.523 | 4.81 | 0.00 | 0.0 | 100.0 | 0.0 | -0.70 | 0.57 | 0.82 | 3.51 | 3.4 | 0.003 | 0.62 | 0.0 | 0.04 | 17.24 | 0.00 | 2.211 | 11.20 | 0.27 | 1.1 | 98.9 | 0.0 | 1.42 | 1.20 | 0.58 | 0.85 | 1.95 | 13890 | 1785 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 7RL5 | 24516 | 2023-07-11 | 2021-07-23 | 3.8 | 3.61 | — | 3.8 | 0.013 | 2.04 | 24.0 | 0.11 | 16.71 | 0.02 | 0.524 | 3.05 | 2.05 | 3.3 | 96.3 | 0.4 | -1.86 | 0.40 | 0.52 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106032 | 6708 | 24 | 0 | 24 | 0 | 52716 | logfile |
✔ | 5iYD | 8138 | 2023-07-19 | 2016-03-24 | 3.9 | 3.83 | — | 3.9 | 0.011 | 1.73 | 8.0 | 0.08 | 17.24 | 0.01 | 0.526 | 22.15 | 3.28 | 8.5 | 87.8 | 3.8 | -2.10 | 0.70 | 0.62 | 1.39 | 3.8 | 0.005 | 0.98 | 0.0 | 0.05 | 19.19 | 0.01 | 1.852 | 23.09 | 0.73 | 8.6 | 90.7 | 0.7 | -1.08 | 1.15 | 0.79 | 0.80 | 1.05 | 46709 | 5407 | 31 | 166 | 13 | 0 | 0 | logfile |
✔ | 6QX9 | 4665 | 2023-07-15 | 2019-03-07 | 3.28 | 3.33 | — | 3.3 | 0.011 | 1.31 | 35.0 | 0.08 | 16.06 | 0.01 | 0.530 | 12.89 | 2.29 | 5.5 | 94.1 | 0.3 | -3.26 | 0.46 | 0.51 | 1.65 | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 16.72 | 0.00 | 1.902 | 14.77 | 0.23 | 4.6 | 95.3 | 0.0 | -0.27 | 0.86 | 0.50 | 0.60 | 1.55 | 137494 | 15560 | 77 | 565 | 36 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2023-07-08 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.022 | 1.97 | 2.0 | 0.14 | 10.62 | 0.02 | 0.530 | 1.29 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.70 | 0.0 | 0.05 | 12.69 | 0.00 | 1.066 | 11.99 | 0.00 | 5.1 | 94.9 | 0.0 | -0.35 | 1.89 | 0.81 | 0.81 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2023-07-09 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 11.98 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 25.40 | 0.00 | 2.023 | 15.41 | 0.00 | 2.9 | 97.0 | 0.1 | 0.92 | 1.09 | 0.89 | 0.77 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 6YAN | 10762 | 2023-07-14 | 2020-03-12 | 3.48 | 3.56 | — | 3.5 | 0.018 | 2.03 | 24.0 | 0.13 | 15.70 | 0.02 | 0.554 | 3.68 | 1.68 | 9.0 | 87.4 | 3.6 | -4.09 | 0.71 | 0.66 | 1.43 | 3.5 | 0.008 | 0.86 | 0.0 | 0.04 | 16.82 | 0.01 | 2.038 | 10.68 | 0.79 | 9.9 | 89.9 | 0.2 | -1.98 | 1.84 | 0.82 | 0.85 | 1.93 | 84251 | 5610 | 39 | 1855 | 0 | 0 | 0 | logfile |
✔ | 6F07 | 4163 | 2023-07-05 | 2017-11-17 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 10.28 | 0.01 | 0.559 | 5.81 | 0.70 | 6.1 | 93.7 | 0.2 | -3.04 | 0.47 | 0.57 | 1.27 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 15.52 | 0.00 | 2.155 | 11.17 | 0.18 | 4.4 | 95.6 | 0.0 | 0.99 | 1.53 | 0.56 | 0.70 | 0.72 | 10149 | 1227 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2023-07-04 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 18.03 | 0.00 | 2.263 | 6.15 | 0.68 | 6.4 | 93.6 | 0.0 | 0.32 | 0.56 | 0.61 | 0.78 | 1.33 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o6C | 0633 | 2023-07-14 | 2019-03-05 | 3.1 | 3.26 | — | 3.2 | 0.011 | 1.23 | 0.0 | 0.05 | 12.34 | 0.01 | 0.570 | 3.74 | 0.09 | 6.7 | 90.7 | 2.5 | -1.64 | 0.83 | 0.81 | 2.51 | 3.2 | 0.003 | 0.70 | 0.0 | 0.04 | 16.01 | 0.00 | 1.992 | 11.50 | 0.37 | 5.9 | 93.7 | 0.4 | -0.39 | 2.17 | 0.84 | 0.84 | 2.05 | 30166 | 3660 | 19 | 52 | 9 | 0 | 0 | logfile |
✔ | 8SEZ | 40434 | 2023-07-10 | 2023-04-10 | 3.54 | 3.68 | 3.48 | 3.6 | 0.003 | 0.57 | 0.0 | 0.04 | 12.88 | 0.01 | 0.570 | 14.92 | 0.27 | 2.9 | 96.9 | 0.2 | 1.95 | 0.53 | 0.75 | 1.99 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 16.08 | 0.01 | 2.104 | 9.63 | 0.45 | 3.2 | 96.6 | 0.2 | 1.87 | 0.61 | 0.57 | 0.78 | 2.05 | 20580 | 2508 | 8 | 4 | 4 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2023-07-04 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.51 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.004 | 0.83 | 0.0 | 0.04 | 15.10 | 0.00 | 2.088 | 15.46 | 0.70 | 7.1 | 92.5 | 0.4 | 0.24 | 0.81 | 0.63 | 0.80 | 1.65 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2023-07-05 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.38 | 5.0 | 0.18 | 17.79 | 0.01 | 0.584 | 27.88 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.004 | 0.77 | 0.0 | 0.04 | 17.62 | 0.00 | 2.151 | 12.64 | 0.42 | 6.8 | 92.8 | 0.4 | -0.08 | 0.66 | 0.46 | 0.77 | 1.04 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |
✔ | 6N30 | 9335 | 2023-07-16 | 2018-11-14 | 3.2 | 3.45 | 3.17 | 3.4 | 0.011 | 1.27 | 10.0 | 0.07 | 10.68 | 0.01 | 0.590 | 11.87 | 0.78 | 4.1 | 95.8 | 0.2 | -2.69 | 0.63 | 0.73 | 4.10 | 3.4 | 0.005 | 0.76 | 0.0 | 0.05 | 13.91 | 0.00 | 1.862 | 11.64 | 0.32 | 3.8 | 96.2 | 0.0 | 0.48 | 1.20 | 0.71 | 0.85 | 3.10 | 34851 | 4694 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 7PBX | 13308 | 2023-07-05 | 2021-08-02 | 3.43 | 3.70 | 3.43 | 3.1 | 0.032 | 2.53 | 206.0 | 0.21 | 19.43 | 0.02 | 0.597 | 32.75 | 11.71 | 3.1 | 95.3 | 1.6 | 1.29 | 0.69 | 0.65 | 1.83 | 3.2 | 0.004 | 0.77 | 0.0 | 0.05 | 17.15 | 0.00 | 1.823 | 14.67 | 0.32 | 4.7 | 95.3 | 0.1 | 1.26 | 1.42 | 0.90 | 0.87 | 2.10 | 59472 | 8015 | 35 | 0 | 28 | 0 | 0 | logfile |
✔ | 7WCo | 32426 | 2023-07-05 | 2021-12-20 | 3.8 | 3.89 | — | 3.9 | 0.008 | 1.13 | 0.0 | 0.06 | 11.02 | 0.01 | 0.599 | 4.59 | 0.53 | 14.2 | 85.8 | 0.0 | -5.43 | 0.56 | 0.85 | 2.78 | 3.9 | 0.004 | 0.79 | 0.0 | 0.05 | 15.45 | 0.01 | 2.183 | 9.17 | 0.63 | 8.8 | 91.2 | 0.0 | -2.39 | 1.57 | 0.56 | 0.85 | 2.86 | 8950 | 1195 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 5NP6 | 3618 | 2023-07-21 | 2017-04-13 | 3.6 | 4.23 | 3.52 | 3.6 | 0.004 | 0.66 | 0.0 | 0.06 | 15.49 | 0.02 | 0.612 | 13.59 | 0.00 | 14.9 | 84.5 | 0.6 | -4.69 | 0.90 | 0.87 | 2.11 | 3.6 | 0.004 | 0.74 | 0.0 | 0.04 | 16.14 | 0.01 | 1.947 | 16.57 | 0.72 | 9.0 | 90.5 | 0.5 | -1.53 | 1.66 | 0.92 | 0.90 | 1.66 | 146883 | 5995 | 57 | 4667 | 0 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2023-07-06 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.003 | 0.84 | 0.0 | 0.04 | 17.34 | 0.00 | 2.093 | 16.82 | 0.41 | 4.9 | 94.6 | 0.5 | 0.75 | 3.20 | 0.89 | 0.84 | 1.25 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 7NAT | 12247 | 2023-07-20 | 2021-01-25 | 3.59 | 4.72 | 3.68 | 2.6 | 0.009 | 0.84 | 6.0 | 0.05 | 15.94 | 0.02 | 0.616 | 27.68 | 0.00 | 7.4 | 92.6 | 0.0 | -3.28 | 0.90 | 0.81 | 0.72 | 2.5 | 0.004 | 0.69 | 0.0 | 0.03 | 16.22 | 0.01 | 1.845 | 26.16 | 0.52 | 4.7 | 95.3 | 0.0 | -1.07 | 1.32 | 0.92 | 0.87 | 0.63 | 50921 | 2562 | 25 | 1430 | 66 | 0 | 0 | logfile |