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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8P4C | 17405 | 2024-03-24 | 2023-05-20 | 3.8 | 4.28 | 2.98 | 3.0 | 0.005 | 0.84 | 2.0 | 0.05 | 15.21 | 0.01 | 0.317 | 21.26 | 0.43 | 5.1 | 94.8 | 0.1 | -1.21 | 0.80 | 0.66 | 1.13 | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 16.36 | 0.00 | 2.050 | 14.85 | 1.58 | 5.3 | 94.7 | 0.0 | -0.16 | 2.36 | 0.88 | 0.85 | 1.79 | 41439 | 4953 | 20 | 90 | 4 | 0 | 0 | logfile |
✔ | 7o3X | 12711 | 2024-03-24 | 2021-04-03 | 3.9 | 4.85 | 4.22 | 6.5 | 0.017 | 1.96 | 0.0 | 0.11 | 18.05 | 0.01 | 0.321 | 15.91 | 1.39 | 1.6 | 97.8 | 0.6 | 2.94 | 0.58 | 0.46 | -0.41 | 4.4 | 0.006 | 1.16 | 1.0 | 0.05 | 19.95 | 0.01 | 2.016 | 38.87 | 3.82 | 2.2 | 97.7 | 0.1 | 1.24 | 2.44 | 0.77 | 0.85 | 0.11 | 148395 | 19290 | 105 | 0 | 15 | 0 | 0 | logfile |
✔ | 8SPo | 40680 | 2024-03-21 | 2023-05-03 | 2.98 | 2.34 | 3.17 | 2.1 | 0.004 | 0.60 | 0.0 | 0.26 | 18.84 | 0.00 | 0.334 | 11.05 | 0.00 | 6.0 | 94.0 | 0.0 | -1.15 | 0.46 | 0.30 | 0.19 | 1.6 | 0.004 | 0.72 | 0.0 | 0.04 | 18.88 | 0.00 | 1.817 | 12.21 | 2.22 | 6.6 | 93.4 | 0.0 | -1.13 | 1.34 | 0.57 | 0.49 | 1.24 | 31307 | 3428 | 22 | 154 | 6 | 0 | 0 | logfile |
✔ | 6GJ1 | 0009 | 2024-03-15 | 2018-05-15 | 4.7 | 4.83 | — | 4.4 | 0.010 | 1.51 | 5.0 | 0.07 | 11.65 | 0.01 | 0.341 | 23.90 | 0.72 | 18.3 | 81.3 | 0.4 | -5.15 | 0.83 | 0.71 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 12.88 | 0.01 | 2.123 | 26.89 | 0.14 | 19.3 | 80.6 | 0.1 | -3.97 | 1.15 | 0.86 | 0.78 | — | 13013 | 1638 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5N61 | 3593 | 2024-03-25 | 2017-02-14 | 3.4 | 3.59 | — | 3.5 | 0.012 | 1.19 | 0.0 | 0.05 | 14.86 | 0.01 | 0.343 | 36.26 | 7.23 | 9.1 | 88.8 | 2.1 | -4.08 | 0.72 | 0.65 | 2.60 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 16.48 | 0.00 | 2.018 | 14.67 | 2.45 | 5.5 | 94.3 | 0.2 | -0.48 | 2.74 | 0.81 | 0.84 | 2.07 | 48547 | 5887 | 27 | 79 | 9 | 0 | 0 | logfile |
✔ | 6FKH | 4271 | 2024-03-24 | 2018-01-24 | 4.2 | 4.29 | 4.16 | 4.2 | 0.015 | 1.45 | 28.0 | 0.09 | 12.13 | 0.01 | 0.343 | 62.34 | 0.15 | 3.9 | 96.0 | 0.1 | -0.16 | 0.63 | 0.67 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.61 | 0.00 | 1.947 | 16.26 | 0.05 | 3.6 | 96.3 | 0.1 | 0.02 | 1.91 | 0.68 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✔ | 6HD7 | 0202 | 2024-03-20 | 2018-08-17 | 3.4 | 3.54 | — | 3.3 | 0.002 | 0.43 | 0.0 | 0.03 | 22.25 | 0.00 | 0.345 | 24.96 | 0.08 | 11.1 | 87.1 | 1.9 | -3.26 | 0.66 | 0.65 | 0.74 | 3.3 | 0.009 | 0.85 | 0.0 | 0.05 | 23.56 | 0.01 | 1.962 | 19.94 | 4.29 | 7.8 | 91.8 | 0.4 | -1.43 | 1.91 | 0.76 | 0.88 | 1.82 | 141153 | 7514 | 52 | 3767 | 234 | 0 | 0 | logfile |
✔ | 8P4D | 17406 | 2024-03-24 | 2023-05-20 | 3.6 | 4.31 | 3.02 | 3.0 | 0.005 | 0.81 | 2.0 | 0.05 | 15.40 | 0.01 | 0.346 | 18.76 | 0.43 | 5.1 | 94.9 | 0.1 | -1.14 | 0.83 | 0.73 | 2.01 | 3.0 | 0.003 | 0.65 | 0.0 | 0.04 | 16.25 | 0.00 | 2.165 | 13.27 | 1.25 | 5.2 | 94.8 | 0.0 | 0.06 | 1.22 | 0.88 | 0.84 | 1.87 | 40255 | 4804 | 19 | 92 | 1 | 0 | 0 | logfile |
✔ | 8FTo | 29449 | 2024-03-23 | 2023-01-12 | 1.85 | 1.97 | — | 1.9 | 0.008 | 0.91 | 7.0 | 0.06 | 23.31 | 0.02 | 0.347 | 6.95 | 3.59 | 3.7 | 95.6 | 0.7 | -0.14 | 0.73 | 0.86 | 5.85 | 2.0 | 0.004 | 0.75 | 0.0 | 0.04 | 22.91 | 0.01 | 1.819 | 5.37 | 2.14 | 3.1 | 96.8 | 0.1 | 0.59 | 0.88 | 0.74 | 0.89 | 5.84 | 146562 | 5584 | 111 | 4490 | 286 | 6114 | 0 | logfile |
✔ | 6XZA | 10656 | 2024-03-21 | 2020-02-03 | 2.66 | 4.00 | — | 3.8 | 0.007 | 0.67 | 1.0 | 0.04 | 23.02 | 0.02 | 0.349 | 6.68 | 2.91 | 3.1 | 96.4 | 0.4 | -1.96 | 0.72 | 0.68 | 2.40 | 3.8 | 0.006 | 0.74 | 0.0 | 0.04 | 22.86 | 0.01 | 1.990 | 14.90 | 4.88 | 4.3 | 95.6 | 0.1 | -0.36 | 1.11 | 0.70 | 0.84 | 2.14 | 143983 | 5732 | 54 | 4616 | 1 | 0 | 0 | logfile |
✘ | 6SAG | 10130 | 2024-03-10 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 13.90 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |
✔ | 6RDB | 4812 | 2024-03-22 | 2019-04-12 | 2.8 | 2.89 | 2.82 | 2.9 | 0.008 | 1.00 | 0.0 | 0.06 | 15.16 | 0.01 | 0.351 | 8.68 | 1.23 | 4.1 | 95.8 | 0.1 | -4.44 | 0.70 | 0.84 | 3.24 | 2.9 | 0.010 | 0.75 | 0.0 | 0.04 | 16.41 | 0.00 | 1.896 | 11.55 | 2.19 | 3.6 | 96.4 | 0.0 | -0.17 | 0.50 | 0.70 | 0.86 | 2.93 | 33961 | 4506 | 31 | 0 | 10 | 40 | 0 | logfile |
✔ | 8P4E | 17407 | 2024-03-24 | 2023-05-20 | 3.9 | 4.69 | 3.61 | 3.0 | 0.013 | 1.28 | 5.0 | 0.10 | 14.49 | 0.01 | 0.354 | 12.57 | 1.72 | 5.5 | 94.4 | 0.1 | -2.95 | 0.74 | 0.62 | 1.42 | 3.0 | 0.004 | 0.75 | 0.0 | 0.04 | 15.18 | 0.00 | 1.680 | 16.34 | 1.08 | 4.7 | 95.3 | 0.0 | 0.21 | 1.66 | 0.87 | 0.85 | 1.51 | 41213 | 4941 | 24 | 81 | 10 | 0 | 0 | logfile |
✔ | 8EGS | 28129 | 2024-03-21 | 2022-09-13 | 3.92 | 4.06 | 3.83 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.97 | 0.00 | 0.357 | 27.78 | 0.35 | 3.7 | 96.3 | 0.0 | -0.21 | 0.78 | 0.80 | 1.68 | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 16.25 | 0.00 | 2.135 | 13.21 | 3.71 | 5.3 | 94.7 | 0.0 | -1.06 | 1.51 | 0.75 | 0.84 | 1.47 | 30696 | 3756 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2024-03-18 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.91 | 0.0 | 0.04 | 15.60 | 0.00 | 2.000 | 25.15 | 0.03 | 1.7 | 98.2 | 0.1 | 1.85 | 2.38 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 6EML | 3886 | 2024-03-16 | 2017-10-02 | 3.6 | 3.65 | — | 3.6 | 0.014 | 1.54 | 11.0 | 0.10 | 23.05 | 0.01 | 0.382 | 12.80 | 1.27 | 12.5 | 86.2 | 1.3 | -4.67 | 0.66 | 0.77 | 2.11 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 22.87 | 0.00 | 2.073 | 14.86 | 3.79 | 10.6 | 89.2 | 0.2 | -1.83 | 1.31 | 0.67 | 0.78 | 1.45 | 75886 | 5233 | 32 | 1675 | 0 | 0 | 0 | logfile |
✔ | 3JBV | 6486 | 2024-03-22 | 2015-10-16 | 3.32 | 3.40 | — | 3.3 | 0.007 | 1.32 | 4.0 | 0.10 | 25.42 | 0.01 | 0.389 | 31.39 | 3.04 | 8.1 | 88.9 | 3.0 | -2.71 | 0.67 | 0.78 | 1.48 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 24.19 | 0.01 | 1.980 | 12.86 | 5.99 | 8.9 | 90.5 | 0.6 | -1.87 | 1.56 | 0.69 | 0.80 | 1.40 | 145911 | 5734 | 57 | 4712 | 1 | 0 | 0 | logfile |
✔ | 6SD3 | 10147 | 2024-03-12 | 2019-07-26 | 3.3 | 3.67 | — | 3.2 | 0.008 | 0.84 | 19.0 | 0.04 | 13.90 | 0.01 | 0.390 | 14.32 | 1.24 | 10.8 | 88.5 | 0.7 | -5.37 | 0.79 | 0.84 | 2.93 | 3.2 | 0.003 | 0.63 | 0.0 | 0.04 | 15.24 | 0.00 | 2.154 | 10.68 | 2.41 | 2.9 | 97.1 | 0.0 | -0.26 | 0.68 | 0.79 | 0.85 | 2.34 | 63144 | 8212 | 34 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CL1 | 16709 | 2024-03-16 | 2023-02-16 | 3.35 | 3.67 | 2.87 | 3.6 | 0.008 | 0.93 | 0.0 | 0.06 | 12.18 | 0.01 | 0.393 | 14.11 | 0.54 | 0.0 | 99.1 | 0.9 | -1.05 | 0.61 | 0.75 | 3.54 | 3.7 | 0.003 | 0.59 | 0.0 | 0.04 | 15.24 | 0.00 | 2.182 | 11.26 | 0.72 | 2.1 | 97.4 | 0.5 | 1.93 | 0.64 | 0.65 | 0.78 | 3.06 | 10494 | 1362 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KZo | 23084 | 2024-03-10 | 2020-12-10 | 3.3 | 2.88 | — | 3.3 | 0.005 | 0.86 | 1.0 | 0.05 | 15.08 | 0.01 | 0.399 | 14.01 | 0.29 | 4.0 | 96.0 | 0.0 | -1.81 | 0.77 | 0.76 | 2.07 | 3.3 | 0.003 | 0.68 | 0.0 | 0.04 | 17.06 | 0.00 | 1.858 | 11.47 | 2.95 | 3.5 | 96.5 | 0.0 | 0.34 | 1.49 | 0.78 | 0.79 | 1.61 | 54110 | 6873 | 34 | 8 | 14 | 0 | 0 | logfile |