Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K5B	22679	2022-07-04	2020-09-16	4.5	4.62	—	3.9	0.018	1.93	50.0	0.10	12.72	0.01	0.384	37.49	2.43	4.6	94.6	0.8	-0.04	0.66	0.56	—	4.0	0.008	0.61	0.0	0.04	12.43	0.00	1.730	63.57	0.00	4.5	95.2	0.3	1.89	2.17	0.74	0.79	—	119573	15602	21	0	18	0	156	logfile
✔	3JBV	6486	2022-07-08	2015-10-16	3.32	3.40	—	3.3	0.007	1.32	4.0	0.10	19.58	0.01	0.389	31.42	3.04	8.1	88.9	3.0	-2.71	0.67	0.78	1.48	3.3	0.006	0.82	1.0	0.04	18.06	0.01	1.721	16.11	0.30	9.6	89.8	0.7	-2.08	1.55	0.69	0.80	1.50	145911	5734	57	4712	1	0	0	logfile
✔	6SD3	10147	2022-07-03	2019-07-26	3.3	3.67	—	3.2	0.008	0.84	19.0	0.04	13.90	0.01	0.390	14.35	1.24	10.8	88.5	0.7	-5.37	0.79	0.84	2.93	3.2	0.003	0.66	0.0	0.04	15.38	0.00	2.152	11.03	0.17	2.7	97.3	0.0	-0.36	0.69	0.79	0.85	2.23	63144	8212	34	0	0	0	0	logfile
✔	7KZo	23084	2022-07-03	2020-12-10	3.3	2.88	—	3.3	0.005	0.86	1.0	0.05	15.08	0.01	0.399	14.08	0.29	4.0	96.0	0.0	-1.81	0.77	0.76	2.07	3.3	0.003	0.70	0.0	0.04	16.92	0.00	1.886	11.89	0.38	3.6	96.4	0.0	0.25	1.50	0.78	0.79	1.59	54110	6873	34	8	14	0	0	logfile
✔	6SPD	10282	2022-07-05	2019-09-01	3.28	3.35	—	3.3	0.010	1.16	0.0	0.06	18.38	0.01	0.400	15.54	1.26	12.2	87.1	0.7	-5.12	0.66	0.50	0.28	3.3	0.004	0.65	0.0	0.04	17.12	0.01	1.997	8.63	0.61	10.4	89.5	0.1	-2.80	2.04	0.84	0.83	1.68	90352	3458	32	2967	0	0	0	logfile
✘	5ZLU	6934	2022-07-10	2018-03-29	3.6	3.66	—	3.6	0.007	1.26	2.0	0.07	18.62	0.01	0.401	13.59	2.52	18.9	79.1	1.9	-5.90	0.78	0.77	1.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	150313	6529	60	4596	4	0	0	logfile
✔	6i26	0328	2022-07-05	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.003	0.68	0.0	0.04	10.67	0.00	2.211	6.17	0.00	6.6	93.4	0.0	0.06	0.98	0.82	0.75	—	22765	3366	1	0	221	0	0	logfile
✔	6H4N	0137	2022-07-08	2018-07-22	3.0	3.20	—	3.1	0.007	0.96	4.0	0.05	14.51	0.01	0.418	6.04	0.74	10.1	89.4	0.5	-4.18	0.86	0.87	3.31	3.1	0.005	0.66	0.0	0.04	15.36	0.01	2.022	11.24	4.24	9.7	90.2	0.1	-1.35	1.21	0.87	0.90	2.49	147282	6188	57	4636	0	0	0	logfile
✘	6YMY	10848	2022-07-04	2020-04-10	3.41	3.81	3.50	3.7	0.008	1.25	0.0	0.06	16.55	0.01	0.424	7.47	0.27	8.9	91.0	0.1	-6.00	0.68	0.82	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1766	19	0	16	0	0	logfile
✔	6H05	0108	2022-07-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.05	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	6FVW	4322	2022-07-03	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.52	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	4.6	0.004	0.84	0.0	0.05	15.00	0.01	1.911	18.19	0.03	4.6	95.2	0.2	-0.54	1.86	0.55	0.76	—	110594	14032	59	0	12	20	0	logfile
✔	6T63	10383	2022-07-06	2019-10-17	3.8	3.80	—	3.8	0.005	0.85	0.0	0.05	15.28	0.01	0.439	4.46	0.00	7.1	92.6	0.3	-3.77	0.52	0.79	2.11	3.7	0.005	0.82	0.0	0.04	18.21	0.01	2.085	12.05	0.62	6.8	93.1	0.2	1.22	1.70	0.53	0.81	1.62	30978	3906	18	0	0	0	0	logfile
✘	7ACR	11718	2022-07-10	2020-09-11	3.44	3.72	3.11	2.6	0.004	0.65	21.0	0.04	15.37	0.00	0.444	14.11	1.77	5.3	94.3	0.4	-1.02	0.87	0.78	1.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	151668	5858	66	4920	214	0	0	logfile
✔	6i1X	0326	2022-07-03	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.005	0.87	0.0	0.05	16.53	0.01	2.131	19.55	0.28	5.8	93.8	0.4	-1.45	1.02	0.65	0.61	0.75	54915	7290	15	0	0	0	0	logfile
✔	7B70	12063	2022-07-04	2020-12-09	4.0	4.08	—	3.4	0.008	1.13	3.0	0.06	15.94	0.01	0.463	43.42	4.66	11.9	87.8	0.2	-2.44	0.79	0.66	—	3.0	0.005	0.93	0.0	0.05	16.55	0.01	2.064	38.94	0.80	9.0	91.0	0.0	-1.41	0.95	0.82	0.77	—	17084	2112	10	0	0	0	0	logfile
✔	6XJA	22204	2022-07-04	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.11	18.02	0.01	0.468	73.82	18.37	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.013	1.24	1.0	0.05	16.90	0.01	1.514	34.25	0.17	10.0	89.8	0.2	-2.62	2.54	0.76	0.68	—	16441	2156	5	0	0	0	0	logfile
✔	5Y4o	6805	2022-07-03	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	78.50	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.6	0.004	0.78	0.0	0.04	17.62	0.00	2.052	15.17	1.12	7.2	92.2	0.6	-0.18	1.76	0.59	0.73	1.48	12341	1561	7	0	0	0	0	logfile
✔	5oA1	3727	2022-07-07	2017-06-20	4.4	5.36	—	4.5	0.027	1.76	1.0	0.07	19.15	0.01	0.473	26.37	8.67	5.4	93.4	1.2	-1.92	0.70	0.49	—	4.6	0.013	1.02	0.0	0.05	15.97	0.01	1.800	42.98	0.02	8.1	91.6	0.2	-1.10	3.34	0.79	0.67	—	43459	5668	39	105	7	0	0	logfile
✔	7EWQ	31361	2022-07-07	2021-05-25	3.5	4.01	—	3.7	0.006	0.78	0.0	0.04	15.24	0.00	0.473	29.89	0.00	6.7	93.3	0.0	-3.42	0.74	0.69	2.12	3.8	0.004	0.76	0.0	0.04	17.29	0.00	2.090	15.71	0.43	3.1	96.9	0.0	0.56	1.10	0.76	0.74	1.36	43232	5236	28	84	0	0	0	logfile
✔	6FTJ	4317	2022-07-10	2018-02-22	4.7	4.88	—	4.7	0.011	1.39	18.0	0.10	19.94	0.01	0.475	12.17	11.77	9.8	87.8	2.4	-4.05	0.63	0.62	—	4.7	0.006	0.96	0.0	0.05	18.77	0.01	0.965	41.39	0.04	10.9	88.6	0.5	-2.42	1.17	0.67	0.71	—	152111	8263	73	3938	461	0	0	logfile

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