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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6T63 | 10383 | 2022-12-16 | 2019-10-17 | 3.8 | 3.80 | — | 3.8 | 0.005 | 0.85 | 0.0 | 0.05 | 15.28 | 0.01 | 0.439 | 4.46 | 0.00 | 7.1 | 92.6 | 0.3 | -3.77 | 0.52 | 0.79 | 2.11 | 3.8 | 0.004 | 0.78 | 0.0 | 0.05 | 18.15 | 0.00 | 2.101 | 12.37 | 0.68 | 6.8 | 93.1 | 0.1 | 1.14 | 1.70 | 0.53 | 0.81 | 1.61 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✘ | 6i1X | 0326 | 2022-12-19 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B70 | 12063 | 2022-12-13 | 2020-12-09 | 4.0 | 4.08 | — | 3.4 | 0.008 | 1.13 | 3.0 | 0.06 | 15.94 | 0.01 | 0.463 | 43.42 | 4.66 | 11.9 | 87.8 | 0.2 | -2.44 | 0.79 | 0.66 | — | 3.2 | 0.003 | 0.83 | 0.0 | 0.04 | 16.40 | 0.00 | 2.162 | 27.00 | 0.32 | 7.4 | 92.5 | 0.0 | -0.88 | 0.94 | 0.82 | 0.76 | — | 17084 | 2112 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SSZ | 25417 | 2022-12-13 | 2021-11-11 | 3.25 | 3.49 | — | 3.5 | 0.014 | 1.70 | 20.0 | 0.12 | 14.90 | 0.01 | 0.467 | 7.21 | 6.31 | 5.5 | 94.5 | 0.0 | -2.29 | 0.56 | 0.79 | 3.16 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.30 | 0.00 | 2.218 | 6.19 | 0.12 | 3.7 | 96.3 | 0.0 | 1.07 | 1.05 | 0.70 | 0.84 | 3.34 | 15283 | 1908 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6XJA | 22204 | 2022-12-13 | 2020-06-23 | 4.0 | 4.11 | — | 3.7 | 0.023 | 1.93 | 31.0 | 0.12 | 18.04 | 0.01 | 0.468 | 73.79 | 18.43 | 6.1 | 92.2 | 1.7 | -1.93 | 0.69 | 0.54 | — | 3.8 | 0.004 | 0.83 | 0.0 | 0.04 | 16.65 | 0.01 | 2.093 | 25.14 | 0.52 | 8.7 | 91.1 | 0.2 | -2.40 | 2.55 | 0.75 | 0.67 | — | 16441 | 2156 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2022-12-12 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.004 | 0.79 | 0.0 | 0.04 | 17.52 | 0.00 | 2.091 | 15.78 | 1.12 | 7.4 | 91.9 | 0.7 | -0.14 | 1.76 | 0.59 | 0.73 | 1.43 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oA1 | 3727 | 2022-12-21 | 2017-06-20 | 4.4 | 5.36 | — | 4.5 | 0.027 | 1.76 | 1.0 | 0.07 | 19.15 | 0.01 | 0.473 | 26.45 | 8.67 | 5.4 | 93.4 | 1.2 | -1.92 | 0.70 | 0.49 | — | 4.6 | 0.012 | 0.87 | 0.0 | 0.05 | 15.81 | 0.01 | 1.979 | 31.14 | 0.00 | 6.5 | 93.3 | 0.2 | -0.43 | 3.31 | 0.78 | 0.66 | — | 43459 | 5668 | 39 | 105 | 7 | 0 | 0 | logfile |
✔ | 5M3F | 4147 | 2022-12-18 | 2016-10-14 | 3.8 | 3.88 | 3.92 | 3.9 | 0.006 | 0.89 | 0.0 | 0.05 | 11.59 | 0.01 | 0.477 | 14.45 | 1.14 | 6.6 | 93.1 | 0.3 | -3.19 | 0.59 | 0.74 | 2.61 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 15.96 | 0.00 | 1.983 | 9.86 | 0.30 | 4.2 | 95.8 | 0.0 | -0.93 | 1.67 | 0.64 | 0.79 | 1.69 | 34032 | 4161 | 22 | 47 | 8 | 0 | 0 | logfile |
✔ | 7TQL | 26067 | 2022-12-15 | 2022-01-26 | 3.2 | 2.54 | 3.55 | 2.8 | 0.012 | 1.50 | 15.0 | 0.11 | 16.04 | 0.00 | 0.514 | 4.16 | 1.16 | 6.6 | 92.8 | 0.6 | -2.65 | 0.71 | 0.76 | 2.00 | 2.9 | 0.005 | 0.72 | 0.0 | 0.04 | 17.08 | 0.01 | 2.067 | 12.92 | 0.97 | 5.8 | 94.2 | 0.1 | -0.78 | 0.51 | 0.79 | 0.80 | 1.69 | 80976 | 5508 | 43 | 1731 | 5 | 0 | 0 | logfile |
✔ | 5iYD | 8138 | 2022-12-22 | 2016-03-24 | 3.9 | 3.83 | — | 3.9 | 0.011 | 1.73 | 8.0 | 0.08 | 17.24 | 0.01 | 0.526 | 22.33 | 3.28 | 8.5 | 87.8 | 3.8 | -2.10 | 0.70 | 0.62 | 1.39 | 3.8 | 0.004 | 0.96 | 0.0 | 0.05 | 19.31 | 0.01 | 1.944 | 21.96 | 0.65 | 8.1 | 91.3 | 0.6 | -1.04 | 1.16 | 0.79 | 0.80 | 0.95 | 46709 | 5407 | 31 | 166 | 13 | 0 | 0 | logfile |
✔ | 7T76 | 25735 | 2022-12-13 | 2021-12-14 | 4.43 | 4.68 | 4.39 | 4.5 | 0.021 | 1.95 | 2.0 | 0.14 | 10.42 | 0.02 | 0.530 | 1.50 | 0.77 | 3.4 | 96.4 | 0.3 | 0.31 | 0.81 | 0.80 | — | 4.5 | 0.003 | 0.69 | 0.0 | 0.05 | 12.49 | 0.00 | 0.921 | 13.06 | 0.00 | 5.4 | 94.6 | 0.1 | -0.60 | 1.89 | 0.81 | 0.82 | — | 16587 | 1934 | 42 | 0 | 104 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2022-12-14 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 12.09 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 25.35 | 0.00 | 2.074 | 12.99 | 0.00 | 2.6 | 97.2 | 0.1 | 0.91 | 1.09 | 0.89 | 0.78 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 6YAN | 10762 | 2022-12-16 | 2020-03-12 | 3.48 | 3.56 | — | 3.5 | 0.018 | 2.02 | 24.0 | 0.13 | 15.58 | 0.02 | 0.554 | 3.68 | 1.68 | 9.0 | 87.4 | 3.6 | -4.09 | 0.71 | 0.66 | 1.43 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 16.37 | 0.00 | 2.097 | 9.02 | 0.46 | 7.8 | 92.1 | 0.1 | -1.55 | 1.83 | 0.82 | 0.85 | 1.68 | 84251 | 5610 | 39 | 1855 | 0 | 0 | 0 | logfile |
✔ | 6F07 | 4163 | 2022-12-12 | 2017-11-17 | 3.6 | 3.68 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 10.28 | 0.01 | 0.559 | 5.81 | 0.70 | 6.1 | 93.7 | 0.2 | -3.04 | 0.47 | 0.57 | 1.27 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.26 | 0.00 | 2.139 | 9.62 | 0.00 | 3.8 | 96.2 | 0.0 | 1.25 | 1.51 | 0.55 | 0.69 | 0.79 | 10149 | 1227 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6SFX | 10162 | 2022-12-14 | 2019-08-02 | 4.0 | 3.90 | 3.75 | 3.9 | 0.012 | 1.02 | 1.0 | 0.06 | 16.15 | 0.01 | 0.560 | 24.28 | 0.14 | 7.7 | 92.0 | 0.3 | -4.75 | 0.73 | 0.74 | — | 3.8 | 0.004 | 0.90 | 0.0 | 0.05 | 18.06 | 0.00 | 2.068 | 23.27 | 0.60 | 4.9 | 95.1 | 0.0 | -0.75 | 1.52 | 0.74 | 0.76 | — | 20196 | 2602 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TAT | 10427 | 2022-12-11 | 2019-10-30 | 3.7 | 2.79 | — | 2.9 | 0.005 | 0.91 | 0.0 | 0.05 | 15.56 | 0.01 | 0.562 | 5.86 | 0.68 | 6.8 | 93.2 | 0.0 | -4.23 | 0.61 | 0.78 | 2.00 | 2.9 | 0.003 | 0.59 | 0.0 | 0.04 | 17.81 | 0.00 | 2.269 | 6.15 | 0.27 | 7.2 | 92.8 | 0.0 | 0.33 | 0.57 | 0.62 | 0.78 | 1.37 | 6790 | 820 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RiB | 4887 | 2022-12-13 | 2019-04-23 | 4.2 | 3.32 | — | 4.0 | 0.008 | 1.12 | 0.0 | 0.06 | 18.48 | 0.00 | 0.563 | 15.47 | 9.09 | 10.1 | 89.9 | 0.0 | -5.68 | 0.73 | 0.66 | — | 3.9 | 0.004 | 0.87 | 0.0 | 0.05 | 14.18 | 0.00 | 2.098 | 20.67 | 0.00 | 10.8 | 89.2 | 0.0 | -5.32 | 1.95 | 0.77 | 0.74 | — | 16368 | 2222 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o6C | 0633 | 2022-12-16 | 2019-03-05 | 3.1 | 3.26 | — | 3.2 | 0.011 | 1.23 | 0.0 | 0.05 | 12.23 | 0.01 | 0.570 | 4.18 | 0.09 | 6.7 | 90.7 | 2.5 | -1.64 | 0.83 | 0.81 | 2.51 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 16.00 | 0.00 | 2.010 | 11.15 | 0.16 | 5.4 | 94.1 | 0.4 | -0.26 | 2.17 | 0.84 | 0.83 | 1.95 | 30166 | 3660 | 19 | 52 | 9 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2022-12-11 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 39.63 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.82 | 0.0 | 0.04 | 15.10 | 0.00 | 2.086 | 15.11 | 0.39 | 6.9 | 92.7 | 0.4 | 0.29 | 0.82 | 0.63 | 0.80 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ0 | 20949 | 2022-12-12 | 2019-11-14 | 3.24 | 3.60 | — | 3.6 | 0.022 | 1.37 | 5.0 | 0.18 | 17.76 | 0.01 | 0.584 | 27.88 | 2.73 | 7.5 | 91.5 | 1.0 | -2.63 | 0.48 | 0.76 | 1.87 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 17.48 | 0.00 | 2.176 | 12.07 | 0.42 | 6.8 | 92.9 | 0.3 | -0.28 | 0.67 | 0.46 | 0.76 | 1.51 | 9557 | 1138 | 5 | 0 | 26 | 0 | 0 | logfile |