Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7E0J	30934	2021-12-01	2021-01-28	3.13	2.94	—	3.1	0.006	1.35	0.0	0.06	18.34	0.02	1.214	7.02	0.97	5.0	95.0	0.0	-2.78	0.59	0.81	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8140	672	6	0	56	0	0	logfile
✘	7NKZ	12451	2021-12-01	2021-02-19	2.5	2.68	2.48	2.6	0.006	0.73	1.0	0.04	13.30	0.00	1.216	11.51	0.63	1.1	98.9	0.0	0.48	0.70	0.88	4.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6424	792	4	0	5	42	0	logfile
✔	7RNL	24579	2021-12-01	2021-07-29	3.7	3.59	—	3.8	0.014	2.16	96.0	0.13	17.15	0.02	1.220	4.59	1.43	5.8	94.1	0.2	-1.92	0.52	0.64	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	141216	8944	32	0	64	0	70096	logfile
✘	7D5i	30582	2021-12-01	2020-09-26	2.79	2.96	—	3.0	0.005	0.71	0.0	0.04	13.37	0.00	1.220	6.64	0.00	8.3	91.7	0.0	-1.65	0.65	0.88	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6232	793	3	0	3	0	0	logfile
✘	7FBS	31519	2021-12-01	2021-07-12	3.4	3.24	—	3.2	0.021	1.19	0.0	0.09	18.03	0.01	1.222	18.70	3.06	7.4	92.5	0.1	-3.42	0.59	0.77	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9274	1118	1	0	17	0	0	logfile
✔	3J9E	6240	2021-12-01	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.69	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.83	0.0	0.04	17.71	0.00	2.229	9.48	0.46	7.8	91.3	1.0	0.97	1.23	0.73	0.85	3.56	4098	520	1	0	0	0	0	logfile
✘	7C9C	30311	2021-12-01	2020-06-05	3.33	3.44	—	3.4	0.007	0.88	0.0	0.05	17.06	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7452	924	7	9	6	0	0	logfile
✘	7CUW	30475	2021-12-01	2020-08-25	2.63	2.93	—	2.8	0.010	0.93	0.0	0.05	15.56	0.02	1.241	3.68	5.84	3.8	96.0	0.3	-4.15	0.71	0.89	4.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9839	1199	6	0	9	0	0	logfile
✘	7CUB	30471	2021-12-01	2020-08-22	2.55	2.79	—	2.7	0.008	0.85	0.0	0.05	14.60	0.01	1.245	4.03	4.63	3.8	95.9	0.3	-3.84	0.73	0.89	4.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9842	1199	7	0	9	13	0	logfile
✔	7F55	31458	2021-12-01	2021-06-21	3.1	3.51	—	3.5	0.004	0.90	1.0	0.05	11.85	0.01	1.246	8.07	0.34	1.9	98.0	0.1	1.13	0.55	0.66	1.71	3.5	0.003	0.64	1.0	0.04	15.61	0.01	2.197	9.56	0.34	2.3	97.7	0.0	0.79	1.70	0.59	0.71	1.43	8088	1027	7	0	2	2	0	logfile
✘	6WXV	21964	2021-12-02	2020-05-12	3.3	3.75	—	3.7	0.008	0.90	2.0	0.05	13.20	0.01	1.248	9.50	0.47	5.5	94.4	0.2	-4.42	0.71	0.77	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10605	1319	5	0	15	0	0	logfile
✘	7CUQ	30474	2021-12-01	2020-08-24	2.64	2.91	—	2.9	0.008	0.74	0.0	0.04	13.22	0.01	1.249	4.08	3.42	3.0	96.9	0.1	-4.33	0.50	0.75	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9834	1199	6	0	9	0	0	logfile
✔	7RYQ	24745	2021-12-01	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.9	0.003	0.75	0.0	0.04	13.98	0.01	2.154	16.28	0.00	6.2	93.8	0.0	-0.19	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	5X8R	6710	2021-12-01	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.13	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.008	0.90	0.0	0.04	16.23	0.01	1.588	25.60	0.35	12.7	86.8	0.4	-2.34	1.31	0.81	0.84	1.07	55412	2969	26	1480	0	0	0	logfile
✘	6MHZ	9124	2021-12-01	2018-09-18	4.1	4.03	—	4.0	0.007	1.18	0.0	0.06	11.43	0.01	1.258	9.19	0.39	10.0	89.9	0.1	-4.72	0.50	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7112	908	6	0	2	0	0	logfile
✔	6UZ3	20951	2021-12-01	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.21	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.82	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✘	6Mi8	9126	2021-12-01	2018-09-19	4.3	4.20	—	4.2	0.007	1.17	0.0	0.07	11.58	0.01	1.262	6.40	0.13	8.8	91.2	0.0	-5.13	0.56	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7139	911	6	0	2	0	0	logfile
✔	7A5J	11645	2021-12-01	2020-08-21	3.1	2.70	3.04	3.0	0.009	0.98	0.0	0.05	17.10	0.01	1.265	4.14	0.84	5.2	94.7	0.2	-4.41	0.63	0.73	2.66	2.9	0.006	0.73	1.0	0.04	17.75	0.01	1.400	10.73	0.51	4.4	95.6	0.0	-0.76	0.53	0.65	0.79	2.48	106132	8540	71	1694	205	0	0	logfile
✔	5A7A	3074	2021-12-01	2015-07-03	4.1	3.87	—	3.9	0.008	1.83	0.0	0.09	20.18	0.01	1.270	105.04	3.97	7.0	93.0	0.0	-3.08	0.56	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	158894	18550	212	318	0	0	0	logfile
✔	7A5F	11641	2021-12-01	2020-08-21	4.4	3.26	4.22	3.2	0.007	1.05	1.0	0.05	17.96	0.01	1.281	6.81	0.83	9.5	90.2	0.3	-4.86	0.60	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	165767	13477	108	2644	173	79	0	logfile

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