Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UGN	26490	2022-12-15	2022-03-25	3.4	3.60	3.35	3.4	0.002	0.54	0.0	0.18	13.19	0.01	0.844	6.82	0.11	4.5	95.5	0.0	-3.47	0.83	0.84	2.43	3.4	0.007	0.76	0.0	0.05	15.66	0.01	2.124	9.53	0.67	7.8	92.2	0.0	-2.15	1.01	0.84	0.88	2.68	25698	3150	49	0	87	0	0	logfile
✔	4Ui9	2924	2022-12-13	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	20.01	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.004	0.84	0.0	0.04	17.09	0.00	2.082	16.90	0.40	5.9	93.7	0.4	0.73	3.18	0.89	0.84	1.27	66453	8472	25	0	5	0	0	logfile
✔	7A24	11615	2022-12-22	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	14.94	0.01	0.850	24.02	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.009	1.78	0.0	0.33	17.20	0.01	1.780	29.68	0.64	8.3	91.6	0.1	-2.10	1.19	0.59	0.59	0.49	49497	6253	46	0	17	0	0	logfile
✔	5VA3	8652	2022-12-14	2017-03-24	4.0	7.06	—	6.7	0.008	1.07	0.0	0.06	12.27	0.01	0.850	7.97	1.30	4.8	94.1	1.1	-3.78	0.59	0.55	—	6.7	0.004	0.86	0.0	0.05	15.09	0.00	2.113	20.99	0.43	3.7	96.1	0.2	-0.42	1.43	0.62	0.75	—	22000	2795	5	0	0	0	0	logfile
✔	7LF2	23298	2022-12-18	2021-01-15	3.72	4.26	3.84	4.0	0.007	1.03	0.0	0.06	9.01	0.01	0.855	11.80	0.16	11.0	88.9	0.1	-4.07	0.80	0.70	1.81	4.0	0.004	0.78	0.0	0.05	12.71	0.00	1.369	21.60	0.21	9.7	90.2	0.1	-2.15	2.49	0.81	0.72	1.81	33798	4452	24	0	12	0	0	logfile
✔	6EM4	3889	2022-12-21	2017-10-01	4.1	4.76	—	4.0	0.008	1.44	0.0	0.12	20.82	0.00	0.855	2.35	0.00	7.5	90.4	2.1	-3.71	0.66	0.57	—	3.9	0.004	0.88	0.0	0.04	25.28	0.00	1.958	17.38	0.00	17.6	82.2	0.1	-2.11	3.15	0.80	0.63	—	45400	6013	37	1779	0	0	0	logfile
✔	6GYL	0091	2022-12-21	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.68	0.00	0.860	9.36	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.4	0.004	0.85	0.0	0.05	14.68	0.01	2.050	23.50	0.00	7.9	91.9	0.3	-1.55	1.32	0.51	0.20	—	43409	5250	30	112	11	0	0	logfile
✔	6PX3	20517	2022-12-13	2019-07-24	4.1	5.90	—	4.1	0.008	0.94	0.0	0.06	26.81	0.01	0.861	4.74	0.45	4.5	95.5	0.1	-0.93	0.89	0.79	—	4.1	0.005	0.68	0.0	0.04	27.50	0.01	2.139	22.53	0.11	5.0	95.0	0.0	-0.08	2.47	0.90	0.81	—	14323	1059	11	290	3	0	0	logfile
✘	6YP7	10865	2022-12-19	2020-04-15	3.8	4.64	—	3.8	0.015	1.46	0.0	0.11	16.37	0.02	0.864	22.04	2.15	4.8	95.2	0.0	-1.92	0.80	0.83	1.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✔	7Z12	14438	2022-12-14	2022-02-24	3.0	3.83	—	3.4	0.007	1.03	1.0	0.06	15.28	0.01	0.865	31.35	1.37	15.0	83.9	1.1	-3.04	0.84	0.81	1.95	3.4	0.005	0.86	0.0	0.05	16.53	0.01	2.102	23.01	1.62	13.0	86.8	0.2	-1.85	0.58	0.83	0.83	1.54	18352	2286	3	0	0	0	0	logfile
✔	5LMo	4074	2022-12-11	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.52	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.004	0.71	0.0	0.04	16.56	0.01	1.105	28.92	0.00	7.7	91.8	0.5	-1.66	2.16	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	6GYS	0096	2022-12-20	2018-07-01	4.4	5.08	—	4.4	0.008	1.12	0.0	0.06	15.13	0.01	0.873	15.06	0.56	10.8	89.1	0.1	-4.13	0.92	0.82	—	4.4	0.004	0.72	0.0	0.04	15.55	0.00	1.337	21.94	0.00	9.1	90.9	0.0	-1.22	1.29	0.93	0.83	—	38890	4441	16	104	8	0	0	logfile
✔	4UY8	2773	2022-12-16	2014-08-29	3.8	4.07	—	4.1	0.010	1.50	8.0	0.07	15.49	0.01	0.879	12.40	11.16	16.3	76.9	6.8	-5.04	0.53	0.64	0.36	4.0	0.004	0.65	0.0	0.03	17.10	0.01	1.501	60.50	1.68	16.8	81.0	2.1	-3.46	1.60	0.58	0.80	1.11	92995	3468	47	3049	144	439	8	logfile
✔	6ZQF	11362	2022-12-16	2020-07-09	4.9	5.01	—	4.8	0.009	1.42	25.0	0.08	17.00	0.01	0.887	15.97	0.00	6.2	92.3	1.5	-2.85	0.69	0.48	—	4.8	0.005	0.94	0.0	0.05	18.65	0.00	1.930	21.25	0.00	12.6	87.1	0.3	-2.62	1.55	0.81	0.72	—	89582	11884	43	1447	1	0	0	logfile
✔	6N2Z	9334	2022-12-19	2018-11-14	3.0	3.31	3.03	3.3	0.008	1.08	0.0	0.06	10.44	0.01	0.890	9.65	0.51	3.7	96.3	0.1	-2.41	0.64	0.76	3.99	3.2	0.003	0.68	0.0	0.04	14.80	0.00	1.940	11.23	2.31	3.6	96.3	0.0	0.75	1.20	0.62	0.80	2.94	35051	4692	27	0	26	0	0	logfile
✔	7RLC	24525	2022-12-19	2021-07-23	3.2	3.75	—	3.2	0.003	0.65	0.0	0.04	9.50	0.00	0.891	7.51	0.00	5.3	94.4	0.3	-1.71	0.83	0.79	1.78	3.2	0.003	0.57	0.0	0.04	11.42	0.00	1.898	5.84	0.16	5.0	95.0	0.0	-0.15	1.27	0.89	0.88	2.34	34980	4422	12	0	24	0	0	logfile
✔	6TE9	10477	2022-12-13	2019-11-11	3.58	3.70	—	3.6	0.011	1.32	0.0	0.08	10.50	0.01	0.891	13.15	0.82	9.9	90.0	0.1	-5.43	0.77	0.85	3.48	3.6	0.004	0.81	0.0	0.05	15.45	0.01	2.139	15.45	1.14	7.8	92.2	0.0	-1.55	0.71	0.77	0.86	2.06	66906	8892	42	0	0	0	0	logfile
✔	5FLX	3221	2022-12-15	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.97	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.76	0.0	0.04	16.76	0.01	1.820	23.05	1.30	9.0	90.5	0.5	-1.47	1.52	0.47	0.80	0.65	80592	4810	40	1972	76	0	0	logfile
✔	6Z5U	11082	2022-12-13	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	11.91	0.01	0.901	4.94	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.76	0.0	0.04	14.53	0.00	1.928	14.28	0.41	5.2	94.8	0.0	-0.62	1.59	0.29	0.18	0.56	17880	2334	14	0	4	0	0	logfile
✔	7LQW	23490	2022-12-15	2021-02-15	4.47	7.28	4.96	4.6	0.002	0.77	1.0	0.05	13.42	0.00	0.911	5.69	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	4.7	0.003	0.62	0.0	0.04	13.05	0.00	2.133	15.64	0.12	5.7	94.3	0.1	-0.97	0.83	0.87	0.82	—	25332	3374	8	0	26	0	0	logfile

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