Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V2A	31639	2023-04-28	2021-08-07	3.4	3.63	—	3.5	0.011	0.96	5.0	0.06	15.25	0.01	1.059	25.66	2.50	9.5	90.2	0.3	-3.95	0.82	0.84	2.51	3.5	0.003	0.67	0.0	0.04	15.95	0.00	2.154	10.90	0.30	5.5	94.3	0.2	-0.92	1.16	0.82	0.85	2.68	28017	3657	12	0	24	0	0	logfile
✔	6E10	8951	2023-04-21	2018-07-08	4.16	4.27	—	4.2	0.008	1.16	11.0	0.07	10.73	0.01	1.063	10.41	1.07	5.8	93.8	0.4	-4.45	0.79	0.72	—	4.1	0.005	0.78	0.0	0.05	12.99	0.00	2.041	18.20	0.05	7.3	92.4	0.2	-0.84	1.49	0.83	0.81	—	57352	6823	34	0	359	0	0	logfile
✔	7QGU	13959	2023-04-28	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	8GWE	34310	2023-04-26	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.89	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	7VAQ	31858	2023-04-29	2021-08-30	3.6	3.18	3.57	3.3	0.003	0.53	0.0	0.04	13.52	0.00	1.066	5.47	0.00	1.8	98.2	0.0	1.14	0.57	0.77	2.21	3.2	0.004	0.61	0.0	0.04	16.58	0.00	1.859	8.32	0.29	3.2	96.8	0.0	0.04	0.74	0.60	0.79	2.18	29558	3788	15	0	6	0	0	logfile
✔	6W6E	21553	2023-04-29	2020-03-16	3.7	3.92	—	3.7	0.008	0.86	0.0	0.05	14.33	0.01	1.067	10.67	0.53	10.6	89.2	0.2	-4.00	0.78	0.73	1.83	3.7	0.006	0.77	0.0	0.05	16.05	0.00	2.049	12.29	0.90	9.7	90.2	0.1	-1.22	1.29	0.85	0.86	1.69	30805	3932	14	0	38	0	0	logfile
✔	7CAC	30326	2023-04-28	2020-06-08	3.55	3.83	—	3.6	0.008	0.89	0.0	0.06	9.66	0.00	1.078	25.83	1.02	5.5	94.3	0.3	-3.22	0.77	0.65	2.65	3.6	0.006	0.71	0.0	0.05	12.28	0.00	2.130	13.82	0.16	5.2	94.7	0.1	-0.88	1.22	0.86	0.78	2.26	28122	3499	23	0	60	0	0	logfile
✔	6E11	8952	2023-04-21	2018-07-08	4.23	4.35	—	4.2	0.007	1.11	6.0	0.06	9.72	0.01	1.079	10.29	0.49	7.9	91.8	0.3	-4.77	0.79	0.73	—	4.2	0.003	0.69	0.0	0.04	12.46	0.00	2.061	15.21	0.02	7.7	92.2	0.1	-1.17	1.07	0.81	0.79	—	57401	6820	34	0	373	0	0	logfile
✔	7CAK	30333	2023-04-29	2020-06-08	3.58	3.74	—	3.5	0.027	1.67	3.0	0.09	11.56	0.01	1.082	48.79	1.80	9.4	89.8	0.8	-4.79	0.72	0.69	2.67	3.5	0.003	0.68	0.0	0.04	13.22	0.00	1.895	12.39	0.15	5.6	94.3	0.1	-1.13	1.25	0.78	0.77	1.99	30263	3771	27	0	60	0	0	logfile
✔	5ZEU	6923	2023-04-19	2018-02-28	3.7	3.76	—	3.7	0.007	1.11	0.0	0.05	16.39	0.01	1.086	17.26	1.40	8.6	90.3	1.1	-4.22	0.59	0.75	1.73	3.7	0.006	0.81	0.0	0.04	16.40	0.01	1.993	15.78	1.05	10.6	89.1	0.3	-1.34	1.35	0.62	0.80	1.57	52954	2406	22	1583	0	0	0	logfile
✔	3JCS	6583	2023-04-23	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.57	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.88	0.0	0.04	19.86	0.01	1.859	18.52	3.13	10.9	89.1	0.1	-2.74	0.51	0.71	0.80	2.76	117257	5847	74	3420	109	144	0	logfile
✔	6BX3	7303	2023-04-21	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.88	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.11	0.00	2.070	24.58	0.00	17.2	82.7	0.1	-3.48	1.39	0.74	0.72	—	10456	1413	7	0	0	0	0	logfile
✔	5VYA	8746	2023-04-28	2017-05-24	4.0	4.09	—	4.0	0.024	1.94	1.0	0.10	12.34	0.01	1.095	10.89	0.77	4.6	94.1	1.4	-1.01	0.73	0.65	—	4.0	0.004	0.83	0.0	0.05	17.35	0.00	2.131	20.15	0.74	6.2	93.3	0.5	-0.57	1.54	0.79	0.78	—	27691	3474	13	0	40	0	0	logfile
✔	5VCA	8659	2023-04-23	2017-03-31	4.8	6.04	—	5.9	0.021	2.64	50.0	0.15	5.91	0.01	1.097	2.19	0.00	6.9	90.0	3.1	-4.41	0.73	0.70	—	5.8	0.004	0.74	0.0	0.04	6.04	0.00	2.096	8.58	0.00	15.1	84.8	0.1	-2.22	2.93	0.76	0.67	—	16080	3264	6	0	0	0	0	logfile
✔	6XE6	22144	2023-04-20	2020-06-12	4.53	4.61	—	4.5	0.011	1.40	2.0	0.07	14.93	0.01	1.098	10.14	1.05	11.3	87.4	1.2	-4.98	0.52	0.76	—	4.5	0.003	0.78	0.0	0.04	13.64	0.00	2.148	13.39	0.15	9.2	90.3	0.5	-1.67	1.21	0.53	0.75	—	6530	826	1	0	6	0	0	logfile
✔	7N1Y	24127	2023-04-27	2021-05-28	4.3	2.48	—	2.0	0.016	2.11	23.0	0.15	14.95	0.01	1.099	10.84	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.003	0.77	0.0	0.05	14.40	0.00	2.080	14.49	0.07	5.8	94.2	0.0	-1.33	0.71	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	6H25	0128	2023-04-26	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	10.98	0.01	1.101	12.90	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.71	0.0	0.04	15.76	0.00	2.094	9.76	0.40	4.9	95.0	0.0	0.01	1.57	0.70	0.81	1.54	22138	2971	12	6	0	0	0	logfile
✔	6iG0	9660	2023-04-25	2018-09-21	3.37	3.49	—	3.4	0.009	1.18	5.0	0.07	12.62	0.01	1.102	14.78	1.40	10.4	89.4	0.1	-5.65	0.75	0.80	2.88	3.4	0.003	0.71	0.0	0.04	16.44	0.00	1.950	14.28	0.75	9.1	90.9	0.0	-2.26	1.35	0.76	0.82	2.06	19354	2258	11	67	5	0	0	logfile
✔	7KEA	22836	2023-04-26	2020-10-10	3.33	3.98	—	3.8	0.013	1.84	6.0	0.10	13.79	0.01	1.103	0.39	1.24	7.2	92.4	0.4	-1.82	0.81	0.76	2.96	3.7	0.005	0.69	0.0	0.04	14.31	0.00	2.170	9.50	0.13	4.4	95.6	0.0	-0.28	0.65	0.82	0.80	2.32	22351	2875	18	0	58	0	0	logfile
✔	7CAB	30325	2023-04-27	2020-06-08	3.52	3.75	—	3.7	0.011	0.89	0.0	0.06	9.61	0.00	1.105	13.85	0.82	4.5	95.5	0.0	-3.16	0.77	0.78	3.43	3.7	0.003	0.63	0.0	0.04	13.29	0.00	2.189	9.09	0.30	3.8	96.2	0.0	-0.35	1.21	0.78	0.82	2.98	24978	3087	21	0	60	0	0	logfile

• ← previous
• Page 7 of 372
• next →