Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PMB	13527	2023-09-30	2021-09-02	3.6	4.10	3.61	3.6	0.006	0.93	1.0	0.06	15.72	0.01	1.317	6.47	0.09	0.2	99.8	0.0	-1.25	0.90	0.83	2.52	3.7	0.003	0.71	0.0	0.04	16.45	0.00	1.955	8.91	0.00	2.1	97.9	0.0	1.39	1.32	0.90	0.85	2.19	10113	1255	6	0	5	0	0	logfile
✔	7PM5	13521	2023-09-30	2021-09-02	3.1	3.88	3.10	3.5	0.005	0.83	1.0	0.05	14.75	0.01	1.317	4.50	0.09	0.3	99.7	0.0	-1.20	0.89	0.86	3.36	3.5	0.003	0.64	0.0	0.04	14.93	0.00	1.985	7.72	0.09	1.8	98.2	0.0	1.58	0.69	0.87	0.86	2.95	10171	1263	6	0	5	0	0	logfile
✔	7PLX	13505	2023-09-30	2021-09-01	3.6	4.05	3.55	3.5	0.005	0.82	1.0	0.05	14.88	0.01	1.321	5.85	0.00	0.2	99.8	0.0	-1.17	0.90	0.81	3.07	3.5	0.004	0.71	0.0	0.04	15.56	0.00	1.893	10.37	0.18	1.9	98.1	0.0	1.59	1.32	0.92	0.85	2.85	10139	1263	5	0	3	0	0	logfile
✔	6iP1	9697	2023-09-30	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.31	0.00	2.178	17.84	0.76	8.1	91.9	0.0	-0.42	1.25	0.61	0.75	0.15	11245	1420	8	0	0	0	0	logfile
✔	7EGB	31111	2023-09-29	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	7PLV	13503	2023-09-30	2021-09-01	3.5	4.06	3.57	3.5	0.005	0.81	0.0	0.05	14.95	0.01	1.322	4.61	0.00	0.4	99.6	0.0	-1.54	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.42	0.00	2.146	7.79	0.09	1.0	99.0	0.0	1.80	0.72	0.92	0.86	2.57	10139	1263	5	0	3	0	0	logfile
✔	7oNi	12995	2023-09-29	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.57	0.0	0.04	15.85	0.00	2.221	7.18	0.45	4.5	95.5	0.0	1.20	0.39	0.88	0.87	2.13	8840	1141	6	0	7	0	0	logfile
✔	7PLW	13504	2023-09-30	2021-09-01	3.5	4.05	3.55	3.5	0.005	0.84	0.0	0.05	15.08	0.01	1.323	4.81	0.00	0.2	99.8	0.0	-1.69	0.91	0.83	3.00	3.5	0.003	0.64	0.0	0.04	15.73	0.00	1.996	8.33	0.00	1.6	98.4	0.0	1.19	1.31	0.91	0.85	2.30	10139	1263	5	0	3	0	0	logfile
✔	7D4F	30572	2023-09-29	2020-09-23	2.57	2.76	—	2.7	0.012	0.95	0.0	0.06	13.57	0.01	1.326	6.05	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.002	0.54	0.0	0.04	15.78	0.01	2.213	5.95	1.53	2.0	98.0	0.0	0.35	0.45	0.75	0.88	3.55	9534	1181	4	0	4	0	0	logfile
✔	6DMY	7968	2023-09-30	2018-06-05	3.6	3.77	—	3.8	0.009	1.44	0.0	0.07	13.71	0.01	1.327	15.96	3.73	11.6	87.3	1.1	-4.80	0.61	0.72	2.24	3.7	0.003	0.85	0.0	0.05	16.51	0.00	2.085	11.83	0.62	11.0	88.9	0.1	-0.57	0.99	0.64	0.77	1.45	9211	1144	5	0	12	0	0	logfile
✘	8DJK	27460	2023-09-28	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.52	1.0	1.03	15.27	0.01	1.327	7.25	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7091	870	7	0	8	0	0	logfile
✔	6Xi8	22191	2023-09-28	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.59	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.94	0.97	9.0	91.0	0.0	-2.43	1.23	0.68	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7LV9	23530	2023-09-28	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.67	0.0	0.04	29.32	0.00	2.143	21.19	0.00	3.9	96.1	0.0	1.21	1.93	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7LV8	23529	2023-09-30	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.58	0.0	0.03	27.68	0.00	2.243	9.22	0.33	2.7	97.3	0.0	2.29	0.56	0.70	0.79	1.18	10651	764	10	242	0	0	0	logfile
✔	3JD8	6640	2023-09-30	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	16.87	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.005	0.96	0.0	0.05	12.46	0.00	2.015	23.00	0.00	9.8	89.4	0.8	-1.20	1.21	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	5oQJ	3846	2023-09-30	2017-08-11	4.7	4.68	—	4.2	0.007	0.54	0.0	0.04	12.44	0.00	1.336	7.82	0.30	6.5	92.3	1.2	-3.41	0.70	0.58	—	4.3	0.003	0.73	0.0	0.04	14.57	0.00	2.031	15.10	0.00	5.5	94.3	0.2	-0.47	1.16	0.84	0.81	—	62931	7649	43	148	557	0	0	logfile
✔	7AR7	11875	2023-09-29	2020-10-23	3.72	3.58	3.33	3.5	0.004	0.72	0.0	0.07	14.84	0.00	1.343	12.41	0.03	6.5	93.5	0.0	-0.26	0.76	0.81	2.01	3.5	0.003	0.62	0.0	0.04	16.33	0.00	2.144	12.11	0.36	6.3	93.7	0.0	0.02	0.94	0.76	0.81	1.54	60606	7564	61	0	54	0	0	logfile
✔	6K32	9907	2023-09-30	2019-05-16	3.2	3.73	—	3.8	0.009	1.22	1.0	0.07	11.49	0.01	1.345	10.22	1.25	6.3	93.3	0.3	-4.88	0.28	0.72	1.49	3.7	0.004	0.78	0.0	0.05	16.38	0.00	1.254	13.10	0.77	5.7	94.2	0.0	-1.38	1.36	0.31	0.82	2.33	61364	7723	10	8	6	0	0	logfile
✘	7W5B	32321	2023-09-27	2021-11-29	4.3	4.80	—	4.3	0.012	1.56	60.0	0.10	14.18	0.01	1.346	16.34	2.51	5.8	93.5	0.7	-3.06	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106538	14610	62	416	19	0	0	logfile
✔	6WUC	21910	2023-09-30	2020-05-04	3.23	3.36	—	3.3	0.004	0.73	1.0	0.05	13.18	0.00	1.351	17.80	2.97	9.0	90.4	0.6	-3.18	0.71	0.85	2.31	3.3	0.004	0.66	0.0	0.04	15.85	0.00	2.148	10.13	0.17	8.7	91.1	0.2	0.35	0.98	0.72	0.87	1.77	10284	1266	5	0	0	0	0	logfile

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