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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PMB | 13527 | 2023-09-30 | 2021-09-02 | 3.6 | 4.10 | 3.61 | 3.6 | 0.006 | 0.93 | 1.0 | 0.06 | 15.72 | 0.01 | 1.317 | 6.47 | 0.09 | 0.2 | 99.8 | 0.0 | -1.25 | 0.90 | 0.83 | 2.52 | 3.7 | 0.003 | 0.71 | 0.0 | 0.04 | 16.45 | 0.00 | 1.955 | 8.91 | 0.00 | 2.1 | 97.9 | 0.0 | 1.39 | 1.32 | 0.90 | 0.85 | 2.19 | 10113 | 1255 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PM5 | 13521 | 2023-09-30 | 2021-09-02 | 3.1 | 3.88 | 3.10 | 3.5 | 0.005 | 0.83 | 1.0 | 0.05 | 14.75 | 0.01 | 1.317 | 4.50 | 0.09 | 0.3 | 99.7 | 0.0 | -1.20 | 0.89 | 0.86 | 3.36 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 14.93 | 0.00 | 1.985 | 7.72 | 0.09 | 1.8 | 98.2 | 0.0 | 1.58 | 0.69 | 0.87 | 0.86 | 2.95 | 10171 | 1263 | 6 | 0 | 5 | 0 | 0 | logfile |
✔ | 7PLX | 13505 | 2023-09-30 | 2021-09-01 | 3.6 | 4.05 | 3.55 | 3.5 | 0.005 | 0.82 | 1.0 | 0.05 | 14.88 | 0.01 | 1.321 | 5.85 | 0.00 | 0.2 | 99.8 | 0.0 | -1.17 | 0.90 | 0.81 | 3.07 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 15.56 | 0.00 | 1.893 | 10.37 | 0.18 | 1.9 | 98.1 | 0.0 | 1.59 | 1.32 | 0.92 | 0.85 | 2.85 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2023-09-30 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.93 | 0.0 | 0.05 | 18.31 | 0.00 | 2.178 | 17.84 | 0.76 | 8.1 | 91.9 | 0.0 | -0.42 | 1.25 | 0.61 | 0.75 | 0.15 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2023-09-29 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.43 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.006 | 0.97 | 0.0 | 0.05 | 16.75 | 0.01 | 1.840 | 21.35 | 0.38 | 8.6 | 91.2 | 0.2 | -1.17 | 1.17 | 0.43 | 0.22 | 0.25 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7PLV | 13503 | 2023-09-30 | 2021-09-01 | 3.5 | 4.06 | 3.57 | 3.5 | 0.005 | 0.81 | 0.0 | 0.05 | 14.95 | 0.01 | 1.322 | 4.61 | 0.00 | 0.4 | 99.6 | 0.0 | -1.54 | 0.91 | 0.83 | 3.00 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.42 | 0.00 | 2.146 | 7.79 | 0.09 | 1.0 | 99.0 | 0.0 | 1.80 | 0.72 | 0.92 | 0.86 | 2.57 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7oNi | 12995 | 2023-09-29 | 2021-05-25 | 3.4 | 3.65 | 3.17 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 14.04 | 0.00 | 1.323 | 7.13 | 0.00 | 4.2 | 95.8 | 0.0 | 0.82 | 0.87 | 0.85 | 2.39 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 15.85 | 0.00 | 2.221 | 7.18 | 0.45 | 4.5 | 95.5 | 0.0 | 1.20 | 0.39 | 0.88 | 0.87 | 2.13 | 8840 | 1141 | 6 | 0 | 7 | 0 | 0 | logfile |
✔ | 7PLW | 13504 | 2023-09-30 | 2021-09-01 | 3.5 | 4.05 | 3.55 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 15.08 | 0.01 | 1.323 | 4.81 | 0.00 | 0.2 | 99.8 | 0.0 | -1.69 | 0.91 | 0.83 | 3.00 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.73 | 0.00 | 1.996 | 8.33 | 0.00 | 1.6 | 98.4 | 0.0 | 1.19 | 1.31 | 0.91 | 0.85 | 2.30 | 10139 | 1263 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7D4F | 30572 | 2023-09-29 | 2020-09-23 | 2.57 | 2.76 | — | 2.7 | 0.012 | 0.95 | 0.0 | 0.06 | 13.57 | 0.01 | 1.326 | 6.05 | 0.76 | 2.2 | 97.8 | 0.0 | -2.50 | 0.73 | 0.85 | 3.63 | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 15.78 | 0.01 | 2.213 | 5.95 | 1.53 | 2.0 | 98.0 | 0.0 | 0.35 | 0.45 | 0.75 | 0.88 | 3.55 | 9534 | 1181 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6DMY | 7968 | 2023-09-30 | 2018-06-05 | 3.6 | 3.77 | — | 3.8 | 0.009 | 1.44 | 0.0 | 0.07 | 13.71 | 0.01 | 1.327 | 15.96 | 3.73 | 11.6 | 87.3 | 1.1 | -4.80 | 0.61 | 0.72 | 2.24 | 3.7 | 0.003 | 0.85 | 0.0 | 0.05 | 16.51 | 0.00 | 2.085 | 11.83 | 0.62 | 11.0 | 88.9 | 0.1 | -0.57 | 0.99 | 0.64 | 0.77 | 1.45 | 9211 | 1144 | 5 | 0 | 12 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2023-09-28 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 15.27 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Xi8 | 22191 | 2023-09-28 | 2020-06-19 | 3.64 | 2.63 | 3.78 | 2.0 | 0.010 | 1.69 | 4.0 | 0.11 | 15.20 | 0.01 | 1.333 | 6.59 | 0.77 | 9.0 | 91.0 | 0.0 | -4.62 | 0.66 | 0.54 | 0.71 | 1.9 | 0.004 | 0.90 | 0.0 | 0.05 | 17.20 | 0.01 | 2.175 | 17.94 | 0.97 | 9.0 | 91.0 | 0.0 | -2.43 | 1.23 | 0.68 | 0.64 | 0.82 | 5022 | 636 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7LV9 | 23530 | 2023-09-28 | 2021-02-24 | 4.5 | 7.82 | 4.59 | 4.4 | 0.003 | 0.64 | 0.0 | 0.04 | 27.26 | 0.00 | 1.334 | 3.02 | 0.00 | 3.2 | 96.8 | 0.0 | -3.35 | 0.82 | 0.66 | — | 4.4 | 0.005 | 0.67 | 0.0 | 0.04 | 29.32 | 0.00 | 2.143 | 21.19 | 0.00 | 3.9 | 96.1 | 0.0 | 1.21 | 1.93 | 0.90 | 0.85 | — | 8238 | 581 | 8 | 190 | 0 | 0 | 0 | logfile |
✔ | 7LV8 | 23529 | 2023-09-30 | 2021-02-24 | 3.4 | 3.85 | 3.57 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 27.28 | 0.00 | 1.334 | 3.06 | 0.17 | 2.7 | 97.3 | 0.0 | -3.26 | 0.70 | 0.78 | 0.97 | 3.9 | 0.004 | 0.58 | 0.0 | 0.03 | 27.68 | 0.00 | 2.243 | 9.22 | 0.33 | 2.7 | 97.3 | 0.0 | 2.29 | 0.56 | 0.70 | 0.79 | 1.18 | 10651 | 764 | 10 | 242 | 0 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-09-30 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.87 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.05 | 12.46 | 0.00 | 2.015 | 23.00 | 0.00 | 9.8 | 89.4 | 0.8 | -1.20 | 1.21 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 5oQJ | 3846 | 2023-09-30 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.44 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 14.57 | 0.00 | 2.031 | 15.10 | 0.00 | 5.5 | 94.3 | 0.2 | -0.47 | 1.16 | 0.84 | 0.81 | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |
✔ | 7AR7 | 11875 | 2023-09-29 | 2020-10-23 | 3.72 | 3.58 | 3.33 | 3.5 | 0.004 | 0.72 | 0.0 | 0.07 | 14.84 | 0.00 | 1.343 | 12.41 | 0.03 | 6.5 | 93.5 | 0.0 | -0.26 | 0.76 | 0.81 | 2.01 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.33 | 0.00 | 2.144 | 12.11 | 0.36 | 6.3 | 93.7 | 0.0 | 0.02 | 0.94 | 0.76 | 0.81 | 1.54 | 60606 | 7564 | 61 | 0 | 54 | 0 | 0 | logfile |
✔ | 6K32 | 9907 | 2023-09-30 | 2019-05-16 | 3.2 | 3.73 | — | 3.8 | 0.009 | 1.22 | 1.0 | 0.07 | 11.49 | 0.01 | 1.345 | 10.22 | 1.25 | 6.3 | 93.3 | 0.3 | -4.88 | 0.28 | 0.72 | 1.49 | 3.7 | 0.004 | 0.78 | 0.0 | 0.05 | 16.38 | 0.00 | 1.254 | 13.10 | 0.77 | 5.7 | 94.2 | 0.0 | -1.38 | 1.36 | 0.31 | 0.82 | 2.33 | 61364 | 7723 | 10 | 8 | 6 | 0 | 0 | logfile |
✘ | 7W5B | 32321 | 2023-09-27 | 2021-11-29 | 4.3 | 4.80 | — | 4.3 | 0.012 | 1.56 | 60.0 | 0.10 | 14.18 | 0.01 | 1.346 | 16.34 | 2.51 | 5.8 | 93.5 | 0.7 | -3.06 | 0.65 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106538 | 14610 | 62 | 416 | 19 | 0 | 0 | logfile |
✔ | 6WUC | 21910 | 2023-09-30 | 2020-05-04 | 3.23 | 3.36 | — | 3.3 | 0.004 | 0.73 | 1.0 | 0.05 | 13.18 | 0.00 | 1.351 | 17.80 | 2.97 | 9.0 | 90.4 | 0.6 | -3.18 | 0.71 | 0.85 | 2.31 | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 15.85 | 0.00 | 2.148 | 10.13 | 0.17 | 8.7 | 91.1 | 0.2 | 0.35 | 0.98 | 0.72 | 0.87 | 1.77 | 10284 | 1266 | 5 | 0 | 0 | 0 | 0 | logfile |