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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UGN | 26490 | 2022-12-15 | 2022-03-25 | 3.4 | 3.60 | 3.35 | 3.4 | 0.002 | 0.54 | 0.0 | 0.18 | 13.19 | 0.01 | 0.844 | 6.82 | 0.11 | 4.5 | 95.5 | 0.0 | -3.47 | 0.83 | 0.84 | 2.43 | 3.4 | 0.007 | 0.76 | 0.0 | 0.05 | 15.66 | 0.01 | 2.124 | 9.53 | 0.67 | 7.8 | 92.2 | 0.0 | -2.15 | 1.01 | 0.84 | 0.88 | 2.68 | 25698 | 3150 | 49 | 0 | 87 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2022-12-13 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 20.01 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.004 | 0.84 | 0.0 | 0.04 | 17.09 | 0.00 | 2.082 | 16.90 | 0.40 | 5.9 | 93.7 | 0.4 | 0.73 | 3.18 | 0.89 | 0.84 | 1.27 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 7A24 | 11615 | 2022-12-22 | 2020-08-16 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.16 | 33.0 | 1.08 | 14.94 | 0.01 | 0.850 | 24.02 | 2.62 | 9.6 | 90.1 | 0.3 | -3.10 | 0.53 | 0.47 | 0.12 | 3.8 | 0.009 | 1.78 | 0.0 | 0.33 | 17.20 | 0.01 | 1.780 | 29.68 | 0.64 | 8.3 | 91.6 | 0.1 | -2.10 | 1.19 | 0.59 | 0.59 | 0.49 | 49497 | 6253 | 46 | 0 | 17 | 0 | 0 | logfile |
✔ | 5VA3 | 8652 | 2022-12-14 | 2017-03-24 | 4.0 | 7.06 | — | 6.7 | 0.008 | 1.07 | 0.0 | 0.06 | 12.27 | 0.01 | 0.850 | 7.97 | 1.30 | 4.8 | 94.1 | 1.1 | -3.78 | 0.59 | 0.55 | — | 6.7 | 0.004 | 0.86 | 0.0 | 0.05 | 15.09 | 0.00 | 2.113 | 20.99 | 0.43 | 3.7 | 96.1 | 0.2 | -0.42 | 1.43 | 0.62 | 0.75 | — | 22000 | 2795 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LF2 | 23298 | 2022-12-18 | 2021-01-15 | 3.72 | 4.26 | 3.84 | 4.0 | 0.007 | 1.03 | 0.0 | 0.06 | 9.01 | 0.01 | 0.855 | 11.80 | 0.16 | 11.0 | 88.9 | 0.1 | -4.07 | 0.80 | 0.70 | 1.81 | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 12.71 | 0.00 | 1.369 | 21.60 | 0.21 | 9.7 | 90.2 | 0.1 | -2.15 | 2.49 | 0.81 | 0.72 | 1.81 | 33798 | 4452 | 24 | 0 | 12 | 0 | 0 | logfile |
✔ | 6EM4 | 3889 | 2022-12-21 | 2017-10-01 | 4.1 | 4.76 | — | 4.0 | 0.008 | 1.44 | 0.0 | 0.12 | 20.82 | 0.00 | 0.855 | 2.35 | 0.00 | 7.5 | 90.4 | 2.1 | -3.71 | 0.66 | 0.57 | — | 3.9 | 0.004 | 0.88 | 0.0 | 0.04 | 25.28 | 0.00 | 1.958 | 17.38 | 0.00 | 17.6 | 82.2 | 0.1 | -2.11 | 3.15 | 0.80 | 0.63 | — | 45400 | 6013 | 37 | 1779 | 0 | 0 | 0 | logfile |
✔ | 6GYL | 0091 | 2022-12-21 | 2018-06-30 | 4.8 | 4.06 | 4.25 | 12.0 | 0.008 | 0.47 | 0.0 | 0.04 | 11.68 | 0.00 | 0.860 | 9.36 | 0.16 | 6.2 | 92.8 | 1.0 | -3.33 | 0.32 | 0.00 | — | 3.4 | 0.004 | 0.85 | 0.0 | 0.05 | 14.68 | 0.01 | 2.050 | 23.50 | 0.00 | 7.9 | 91.9 | 0.3 | -1.55 | 1.32 | 0.51 | 0.20 | — | 43409 | 5250 | 30 | 112 | 11 | 0 | 0 | logfile |
✔ | 6PX3 | 20517 | 2022-12-13 | 2019-07-24 | 4.1 | 5.90 | — | 4.1 | 0.008 | 0.94 | 0.0 | 0.06 | 26.81 | 0.01 | 0.861 | 4.74 | 0.45 | 4.5 | 95.5 | 0.1 | -0.93 | 0.89 | 0.79 | — | 4.1 | 0.005 | 0.68 | 0.0 | 0.04 | 27.50 | 0.01 | 2.139 | 22.53 | 0.11 | 5.0 | 95.0 | 0.0 | -0.08 | 2.47 | 0.90 | 0.81 | — | 14323 | 1059 | 11 | 290 | 3 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2022-12-19 | 2020-04-15 | 3.8 | 4.64 | — | 3.8 | 0.015 | 1.46 | 0.0 | 0.11 | 16.37 | 0.02 | 0.864 | 22.04 | 2.15 | 4.8 | 95.2 | 0.0 | -1.92 | 0.80 | 0.83 | 1.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7Z12 | 14438 | 2022-12-14 | 2022-02-24 | 3.0 | 3.83 | — | 3.4 | 0.007 | 1.03 | 1.0 | 0.06 | 15.28 | 0.01 | 0.865 | 31.35 | 1.37 | 15.0 | 83.9 | 1.1 | -3.04 | 0.84 | 0.81 | 1.95 | 3.4 | 0.005 | 0.86 | 0.0 | 0.05 | 16.53 | 0.01 | 2.102 | 23.01 | 1.62 | 13.0 | 86.8 | 0.2 | -1.85 | 0.58 | 0.83 | 0.83 | 1.54 | 18352 | 2286 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2022-12-11 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.52 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 16.56 | 0.01 | 1.105 | 28.92 | 0.00 | 7.7 | 91.8 | 0.5 | -1.66 | 2.16 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 6GYS | 0096 | 2022-12-20 | 2018-07-01 | 4.4 | 5.08 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 15.13 | 0.01 | 0.873 | 15.06 | 0.56 | 10.8 | 89.1 | 0.1 | -4.13 | 0.92 | 0.82 | — | 4.4 | 0.004 | 0.72 | 0.0 | 0.04 | 15.55 | 0.00 | 1.337 | 21.94 | 0.00 | 9.1 | 90.9 | 0.0 | -1.22 | 1.29 | 0.93 | 0.83 | — | 38890 | 4441 | 16 | 104 | 8 | 0 | 0 | logfile |
✔ | 4UY8 | 2773 | 2022-12-16 | 2014-08-29 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.50 | 8.0 | 0.07 | 15.49 | 0.01 | 0.879 | 12.40 | 11.16 | 16.3 | 76.9 | 6.8 | -5.04 | 0.53 | 0.64 | 0.36 | 4.0 | 0.004 | 0.65 | 0.0 | 0.03 | 17.10 | 0.01 | 1.501 | 60.50 | 1.68 | 16.8 | 81.0 | 2.1 | -3.46 | 1.60 | 0.58 | 0.80 | 1.11 | 92995 | 3468 | 47 | 3049 | 144 | 439 | 8 | logfile |
✔ | 6ZQF | 11362 | 2022-12-16 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 17.00 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.94 | 0.0 | 0.05 | 18.65 | 0.00 | 1.930 | 21.25 | 0.00 | 12.6 | 87.1 | 0.3 | -2.62 | 1.55 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 6N2Z | 9334 | 2022-12-19 | 2018-11-14 | 3.0 | 3.31 | 3.03 | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 10.44 | 0.01 | 0.890 | 9.65 | 0.51 | 3.7 | 96.3 | 0.1 | -2.41 | 0.64 | 0.76 | 3.99 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 14.80 | 0.00 | 1.940 | 11.23 | 2.31 | 3.6 | 96.3 | 0.0 | 0.75 | 1.20 | 0.62 | 0.80 | 2.94 | 35051 | 4692 | 27 | 0 | 26 | 0 | 0 | logfile |
✔ | 7RLC | 24525 | 2022-12-19 | 2021-07-23 | 3.2 | 3.75 | — | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 9.50 | 0.00 | 0.891 | 7.51 | 0.00 | 5.3 | 94.4 | 0.3 | -1.71 | 0.83 | 0.79 | 1.78 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 11.42 | 0.00 | 1.898 | 5.84 | 0.16 | 5.0 | 95.0 | 0.0 | -0.15 | 1.27 | 0.89 | 0.88 | 2.34 | 34980 | 4422 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6TE9 | 10477 | 2022-12-13 | 2019-11-11 | 3.58 | 3.70 | — | 3.6 | 0.011 | 1.32 | 0.0 | 0.08 | 10.50 | 0.01 | 0.891 | 13.15 | 0.82 | 9.9 | 90.0 | 0.1 | -5.43 | 0.77 | 0.85 | 3.48 | 3.6 | 0.004 | 0.81 | 0.0 | 0.05 | 15.45 | 0.01 | 2.139 | 15.45 | 1.14 | 7.8 | 92.2 | 0.0 | -1.55 | 0.71 | 0.77 | 0.86 | 2.06 | 66906 | 8892 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FLX | 3221 | 2022-12-15 | 2015-10-28 | 3.9 | 4.33 | — | 4.3 | 0.003 | 0.71 | 3.0 | 0.05 | 13.54 | 0.00 | 0.894 | 15.97 | 0.19 | 6.8 | 92.6 | 0.6 | -2.97 | 0.42 | 0.58 | 0.37 | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 16.76 | 0.01 | 1.820 | 23.05 | 1.30 | 9.0 | 90.5 | 0.5 | -1.47 | 1.52 | 0.47 | 0.80 | 0.65 | 80592 | 4810 | 40 | 1972 | 76 | 0 | 0 | logfile |
✔ | 6Z5U | 11082 | 2022-12-13 | 2020-05-27 | 3.9 | 4.52 | — | 38.0 | 0.021 | 1.88 | 10.0 | 0.11 | 11.91 | 0.01 | 0.901 | 4.94 | 1.69 | 2.0 | 97.7 | 0.3 | -0.47 | 0.18 | 0.03 | -0.06 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 14.53 | 0.00 | 1.928 | 14.28 | 0.41 | 5.2 | 94.8 | 0.0 | -0.62 | 1.59 | 0.29 | 0.18 | 0.56 | 17880 | 2334 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LQW | 23490 | 2022-12-15 | 2021-02-15 | 4.47 | 7.28 | 4.96 | 4.6 | 0.002 | 0.77 | 1.0 | 0.05 | 13.42 | 0.00 | 0.911 | 5.69 | 0.12 | 4.6 | 95.4 | 0.1 | -1.27 | 0.78 | 0.64 | — | 4.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.05 | 0.00 | 2.133 | 15.64 | 0.12 | 5.7 | 94.3 | 0.1 | -0.97 | 0.83 | 0.87 | 0.82 | — | 25332 | 3374 | 8 | 0 | 26 | 0 | 0 | logfile |