Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZV	24779	2023-04-19	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.37	0.0	0.03	15.99	0.00	2.228	4.86	0.67	0.0	100.0	0.0	5.66	0.87	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7TiK	25912	2023-04-19	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	7UL2	26589	2023-04-20	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✔	8AG3	15414	2023-04-19	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7LXX	23578	2023-04-19	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.19	0.0	0.06	10.12	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.004	0.68	0.0	0.04	14.31	0.00	2.133	8.88	4.21	4.2	95.8	0.0	-0.39	1.60	0.75	0.81	4.41	2740	352	5	0	4	0	0	logfile
✔	7X34	32978	2023-04-19	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.005	0.85	0.0	0.04	20.14	0.00	2.077	35.35	0.00	5.1	94.9	0.0	0.09	0.71	0.21	0.78	1.18	2762	100	2	94	0	0	0	logfile
✔	7UL5	26592	2023-04-19	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.33	0.00	2.337	1.84	0.37	1.7	98.3	0.0	2.87	0.30	0.64	0.86	3.19	2773	371	2	0	0	0	0	logfile
✔	7R7N	24299	2023-04-19	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.48	0.00	2.553	0.78	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.004	0.75	0.0	0.05	14.46	0.00	2.255	8.72	0.45	5.6	94.4	0.0	-1.27	1.32	0.83	0.80	2.47	2790	391	4	0	3	0	0	logfile
✔	7LY0	23581	2023-04-19	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.19	0.0	0.08	9.79	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.005	0.71	0.0	0.05	15.89	0.00	2.125	8.84	2.86	2.7	97.3	0.0	0.06	1.63	0.69	0.76	4.26	2805	354	5	0	6	0	0	logfile
✔	7V0X	26952	2023-04-19	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7T32	25648	2023-04-20	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.68	0.0	0.04	16.41	0.00	2.232	8.43	1.06	4.3	95.4	0.3	2.45	0.95	0.41	0.76	0.65	2861	375	1	0	1	0	0	logfile
✔	7RTV	24690	2023-04-19	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	6RiU	4898	2023-04-19	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	7CAH	30331	2023-04-19	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✘	7YPQ	34011	2023-04-19	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7E3C	30979	2023-04-19	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.84	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.75	0.0	0.05	13.96	0.00	2.140	14.75	0.00	12.6	87.4	0.0	-3.24	1.57	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7Y7K	33668	2023-04-19	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile
✔	6WYJ	21966	2023-04-19	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.59	0.0	0.04	14.52	0.00	2.333	5.74	0.00	1.8	98.2	0.0	2.16	0.60	0.63	0.80	1.47	2949	398	1	0	0	0	0	logfile

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