Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R7N	24299	2021-12-01	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.24	0.0	0.07	9.44	0.00	2.553	0.58	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.007	0.89	0.0	0.05	14.57	0.01	2.237	10.85	0.90	7.0	93.0	0.0	-1.21	1.31	0.84	0.81	2.20	2790	391	4	0	3	0	0	logfile
✔	7LY0	23581	2021-12-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.009	0.82	0.0	0.04	15.47	0.01	2.156	8.66	2.50	2.1	97.9	0.0	0.63	1.63	0.70	0.76	4.04	2805	354	5	0	6	0	0	logfile
✔	7DoU	30800	2021-12-01	2020-12-17	3.0	3.06	—	3.1	0.003	0.67	0.0	0.05	12.73	0.00	2.164	9.00	0.00	9.8	90.2	0.0	-1.42	0.47	0.82	2.63	3.1	0.005	0.74	0.0	0.05	18.53	0.00	2.211	10.04	2.83	8.5	91.5	0.0	-0.98	1.37	0.49	0.85	2.42	2841	372	3	0	0	0	0	logfile
✔	6CU8	7619	2021-12-01	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.43	0.74	2.58	2880	410	10	0	0	0	0	logfile
✔	7RTV	24690	2021-12-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	6RiU	4898	2021-12-01	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7CAH	30331	2021-12-01	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.76	0.0	0.05	14.99	0.01	2.233	15.81	0.74	12.6	87.4	0.0	-3.53	0.55	0.69	0.64	2.17	2889	404	3	0	0	0	0	logfile
✔	6HUD	0274	2021-12-01	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.80	0.0	0.05	12.71	0.01	2.157	19.76	0.30	10.4	89.6	0.0	-5.06	1.49	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✔	7E3C	30979	2021-12-01	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.31	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.003	0.73	0.0	0.05	13.73	0.00	2.114	14.93	0.00	11.8	88.2	0.0	-2.97	1.12	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	6WYJ	21966	2021-12-01	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	6Y1A	10669	2021-12-01	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.75	0.0	0.04	11.09	0.00	2.056	15.01	0.00	11.4	88.6	0.0	-4.91	1.55	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6V5V	21054	2021-12-01	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	6UWL	20923	2021-12-01	2019-11-05	3.62	3.73	—	3.7	0.008	1.15	0.0	0.06	16.05	0.01	2.303	6.24	0.00	7.6	92.2	0.3	-4.71	0.67	0.82	1.71	3.7	0.003	0.77	0.0	0.04	15.98	0.00	2.239	12.97	0.00	6.3	93.7	0.0	-0.01	0.55	0.66	0.81	1.50	3029	402	1	0	1	0	0	logfile
✔	7K45	22660	2021-12-01	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✔	6X12	21986	2021-12-01	2020-05-18	3.52	3.69	—	3.7	0.008	1.08	0.0	0.06	15.87	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.65	0.0	0.04	15.91	0.00	2.249	7.77	0.63	2.5	97.5	0.0	0.23	1.19	0.67	0.85	1.33	3059	407	1	0	1	0	0	logfile
✘	7FiJ	31599	2021-12-01	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7E39	30977	2021-12-01	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.003	0.65	0.0	0.05	15.89	0.00	2.161	11.51	0.00	6.2	93.8	0.0	-2.43	0.42	0.50	0.74	2.23	3074	414	4	0	1	0	0	logfile
✔	6WYK	21967	2021-12-01	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.62	0.77	—	3083	415	1	0	0	0	0	logfile
✔	6X0U	21984	2021-12-01	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.003	0.71	0.0	0.03	17.78	0.01	2.197	6.38	0.58	3.7	96.3	0.0	1.26	0.82	0.27	0.78	2.36	3091	398	4	0	0	0	0	logfile
✔	6V4D	21040	2021-12-01	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.80	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.88	0.0	0.05	16.75	0.01	2.085	13.54	1.01	6.2	93.8	0.0	-0.80	0.63	0.46	0.78	1.50	3095	422	1	0	0	0	0	logfile

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