Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L7H	23212	2023-09-27	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.94	0.0	0.06	16.29	0.00	2.073	19.50	1.96	27.7	72.3	0.0	-4.33	0.93	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7N9A	24253	2023-09-27	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.68	0.0	0.04	15.36	0.01	2.150	14.08	0.39	3.6	96.4	0.0	-0.97	0.55	0.73	0.70	2.00	2431	312	2	0	0	0	0	logfile
✔	6TJo	10512	2023-09-27	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.003	0.74	0.0	0.05	12.71	0.00	2.308	6.81	0.00	5.4	94.6	0.0	-3.46	1.41	0.34	0.75	4.46	2439	321	3	0	0	0	0	logfile
✔	7RZU	24778	2023-09-27	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.002	0.48	0.0	0.03	15.88	0.00	2.308	6.69	1.40	0.0	100.0	0.0	5.49	0.47	0.80	0.81	1.54	2439	324	6	0	0	0	0	logfile
✔	6VHA	21201	2023-09-27	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.003	0.74	0.0	0.05	13.40	0.00	2.336	12.82	0.00	9.8	90.2	0.0	-4.37	3.38	0.57	0.60	—	2439	321	3	0	0	0	0	logfile
✔	7RZS	24776	2023-09-27	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.04	16.16	0.00	2.327	4.66	0.35	0.0	100.0	0.0	5.95	1.19	0.79	0.82	1.19	2445	324	6	0	0	0	0	logfile
✔	7RZR	24775	2023-09-27	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.002	0.36	0.0	0.03	15.29	0.00	2.294	4.44	0.71	0.0	100.0	0.0	6.53	0.31	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	8C8P	16490	2023-09-27	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.003	0.74	0.0	0.04	13.37	0.00	2.169	18.39	0.00	4.8	95.2	0.0	-1.28	1.17	0.68	0.71	—	2449	314	2	0	0	0	0	logfile
✔	7RZT	24777	2023-09-27	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	8G8E	29846	2023-09-27	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.65	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.64	0.0	0.03	28.58	0.00	2.184	17.94	0.00	3.7	96.3	0.0	-0.13	1.83	0.91	0.83	—	2464	140	3	64	0	0	0	logfile
✔	8Di5	27439	2023-09-27	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.37	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.61	0.0	0.04	16.01	0.00	2.309	11.48	0.75	3.3	96.7	0.0	-1.55	0.53	0.64	0.80	3.57	2467	311	3	0	1	0	0	logfile
✔	7QK6	14039	2023-09-27	2021-12-17	2.27	2.34	2.17	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.59	0.0	0.05	15.99	0.00	2.381	4.46	0.69	5.8	94.2	0.0	-2.24	1.45	0.38	0.85	7.07	2469	162	3	0	0	0	1278	logfile
✔	7QKG	14041	2023-09-27	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.59	0.0	0.05	13.27	0.00	2.236	5.27	0.00	4.5	95.5	0.0	-1.51	1.16	0.36	0.83	4.87	2469	162	3	0	0	0	1278	logfile
✔	8DM0	27522	2023-09-27	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.69	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.63	0.0	0.04	14.82	0.00	2.185	8.26	0.00	3.5	96.5	0.0	-0.86	0.48	0.60	0.82	2.80	2480	314	3	0	1	0	0	logfile
✘	8DLY	27520	2023-09-27	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.37	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2483	314	3	0	1	0	0	logfile
✔	7V47	31702	2023-09-27	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	2.9	0.005	0.72	0.0	0.06	17.25	0.00	2.432	8.29	3.25	20.3	79.7	0.0	-4.30	0.33	0.44	0.80	6.27	2484	366	6	0	0	0	0	logfile
✔	7U0Z	26268	2023-09-27	2022-02-19	4.2	3.55	—	4.3	0.004	0.75	0.0	0.05	11.44	0.00	2.146	12.81	0.00	1.9	98.1	0.0	-2.57	0.41	0.71	—	4.3	0.003	0.68	0.0	0.05	12.66	0.00	2.230	10.24	0.00	4.6	95.4	0.0	-3.26	0.68	0.37	0.71	—	2487	330	3	0	0	0	0	logfile
✔	8iY6	35815	2023-09-28	2023-04-04	3.13	3.04	3.19	3.1	0.003	0.55	0.0	0.04	12.05	0.00	2.168	6.91	0.00	2.3	97.7	0.0	1.84	0.42	0.61	2.08	3.1	0.004	0.71	0.0	0.04	14.61	0.00	2.153	10.66	1.77	2.0	98.0	0.0	1.86	1.26	0.42	0.64	1.51	2495	314	2	0	0	0	0	logfile
✔	6YV1	10940	2023-09-27	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.65	0.0	0.04	13.97	0.00	2.248	6.45	0.00	2.2	97.8	0.0	1.32	0.60	0.50	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	6MLU	9146	2023-09-27	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile

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