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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Y13 | 33555 | 2024-03-10 | 2022-06-06 | 3.1 | 3.20 | 3.10 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 13.19 | 0.01 | 2.195 | 8.24 | 0.00 | 6.1 | 93.9 | 0.0 | 1.88 | 0.59 | 0.80 | 3.01 | 3.2 | 0.003 | 0.56 | 0.0 | 0.04 | 15.57 | 0.00 | 2.192 | 8.01 | 1.29 | 5.0 | 95.0 | 0.0 | 2.69 | 0.25 | 0.54 | 0.80 | 2.39 | 2199 | 264 | 1 | 0 | 7 | 2 | 0 | logfile |
✔ | 6PEo | 20328 | 2024-03-10 | 2019-06-20 | 3.3 | 3.52 | — | 3.6 | 0.003 | 0.54 | 0.0 | 0.05 | 13.06 | 0.01 | 2.492 | 10.62 | 0.00 | 9.7 | 90.3 | 0.0 | -1.64 | 0.41 | 0.82 | 3.20 | 3.7 | 0.003 | 0.56 | 0.0 | 0.05 | 16.32 | 0.00 | 2.411 | 7.08 | 5.78 | 4.5 | 95.5 | 0.0 | -2.31 | 1.20 | 0.40 | 0.82 | 4.69 | 2205 | 320 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B6E | 12053 | 2024-03-10 | 2020-12-07 | 4.5 | 2.79 | — | 5.1 | 0.005 | 1.03 | 0.0 | 0.05 | 15.04 | 0.01 | 2.129 | 36.05 | 0.00 | 10.9 | 89.1 | 0.0 | -3.88 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.90 | 0.0 | 0.04 | 14.83 | 0.00 | 2.138 | 25.78 | 0.44 | 11.3 | 88.7 | 0.0 | -1.34 | 0.78 | 0.61 | 0.66 | — | 2205 | 269 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2024-03-10 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.28 | 0.0 | 0.05 | 15.23 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.005 | 0.75 | 0.0 | 0.05 | 16.08 | 0.00 | 2.297 | 24.65 | 6.25 | 13.3 | 86.7 | 0.0 | -5.82 | 0.50 | 0.69 | 0.81 | 2.55 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2024-03-10 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.05 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 16.46 | 0.00 | 2.189 | 6.66 | 3.73 | 2.2 | 97.8 | 0.0 | 3.08 | 0.66 | 0.65 | 0.86 | 1.99 | 2227 | 271 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8iWE | 35765 | 2024-03-10 | 2023-03-29 | 3.4 | 3.95 | 3.24 | 3.8 | 0.004 | 0.93 | 1.0 | 0.07 | 16.00 | 0.00 | 2.321 | 10.10 | 2.84 | 5.9 | 94.1 | 0.0 | -0.50 | 0.58 | 0.79 | 2.37 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 15.57 | 0.00 | 2.180 | 4.59 | 1.90 | 5.2 | 94.8 | 0.0 | 0.40 | 1.01 | 0.63 | 0.86 | 1.79 | 2236 | 296 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8G3K | 29700 | 2024-03-10 | 2023-02-08 | 2.2 | 2.34 | 2.21 | 2.3 | 0.002 | 0.36 | 0.0 | 0.03 | 9.98 | 0.00 | 2.348 | 3.50 | 0.00 | 0.7 | 99.3 | 0.0 | 5.07 | 0.46 | 0.82 | 4.79 | 2.3 | 0.003 | 0.48 | 0.0 | 0.03 | 17.08 | 0.00 | 2.386 | 4.15 | 2.88 | 0.7 | 99.3 | 0.0 | 4.64 | 1.15 | 0.47 | 0.83 | 5.16 | 2244 | 285 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X63 | 38078 | 2024-03-10 | 2023-11-20 | 3.2 | 4.09 | 3.72 | 4.5 | 0.005 | 0.74 | 1.0 | 0.05 | 15.26 | 0.01 | 2.411 | 9.43 | 0.81 | 8.0 | 92.0 | 0.0 | -0.11 | 0.13 | 0.13 | 0.69 | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 17.26 | 0.01 | 2.293 | 9.87 | 2.85 | 7.6 | 92.4 | 0.0 | -0.32 | 1.25 | 0.29 | 0.45 | 0.26 | 2252 | 270 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8iHK | 35447 | 2024-03-10 | 2023-02-22 | 3.21 | 3.56 | 3.40 | 3.6 | 0.005 | 0.62 | 0.0 | 0.04 | 16.22 | 0.00 | 2.246 | 4.47 | 0.00 | 2.8 | 97.2 | 0.0 | -0.99 | 0.51 | 0.79 | 1.56 | 3.6 | 0.002 | 0.58 | 0.0 | 0.04 | 17.06 | 0.00 | 2.325 | 4.70 | 3.81 | 3.6 | 96.4 | 0.0 | -0.36 | 0.33 | 0.48 | 0.78 | 1.01 | 2253 | 283 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 8UUZ | 42602 | 2024-03-10 | 2023-11-02 | 3.77 | 4.50 | 3.78 | 8.8 | 0.003 | 0.73 | 0.0 | 0.04 | 13.06 | 0.00 | 2.213 | 38.18 | 12.61 | 6.6 | 93.4 | 0.0 | -1.81 | 0.61 | 0.33 | 0.27 | 8.5 | 0.003 | 0.91 | 0.0 | 0.05 | 16.74 | 0.01 | 2.249 | 38.64 | 6.52 | 8.0 | 92.0 | 0.0 | -1.98 | 1.31 | 0.75 | 0.58 | 0.64 | 2258 | 300 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL5 | 16949 | 2024-03-10 | 2023-03-30 | 3.4 | 3.10 | 1.47 | 3.0 | 0.003 | 0.44 | 0.0 | 0.06 | 9.97 | 0.00 | 2.393 | 2.17 | 0.00 | 0.0 | 100.0 | 0.0 | -0.75 | 0.53 | 0.87 | 5.76 | 3.0 | 0.002 | 0.37 | 0.0 | 0.05 | 15.49 | 0.00 | 2.326 | 3.70 | 3.91 | 2.1 | 97.9 | 0.0 | -1.20 | 1.02 | 0.55 | 0.88 | 5.14 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oL6 | 16952 | 2024-03-10 | 2023-03-30 | 3.8 | 3.75 | 2.68 | 3.8 | 0.004 | 0.56 | 0.0 | 0.05 | 9.68 | 0.00 | 2.255 | 9.57 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.46 | 0.86 | 5.96 | 3.8 | 0.004 | 0.60 | 0.0 | 0.05 | 15.99 | 0.00 | 2.321 | 11.74 | 9.57 | 7.2 | 92.4 | 0.3 | -2.62 | 1.13 | 0.45 | 0.86 | 4.11 | 2260 | 310 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8W8S | 37358 | 2024-03-10 | 2023-09-04 | 3.3 | 4.07 | 2.88 | 3.9 | 0.005 | 0.77 | 0.0 | 0.05 | 16.34 | 0.01 | 2.310 | 8.96 | 1.64 | 4.0 | 96.0 | 0.0 | 1.56 | 0.57 | 0.81 | 1.74 | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 16.69 | 0.01 | 2.277 | 4.15 | 1.64 | 3.2 | 96.8 | 0.0 | 2.56 | 0.29 | 0.57 | 0.82 | 1.61 | 2265 | 281 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 6L4S | 0833 | 2024-03-10 | 2019-10-21 | 3.37 | 3.47 | — | 4.0 | 0.014 | 1.36 | 0.0 | 0.09 | 10.28 | 0.01 | 2.408 | 7.28 | 0.00 | 5.7 | 94.3 | 0.0 | -3.73 | 0.28 | 0.67 | 4.12 | 4.1 | 0.003 | 0.65 | 0.0 | 0.05 | 14.65 | 0.00 | 2.267 | 8.57 | 8.33 | 5.7 | 94.3 | 0.0 | -3.42 | 3.09 | 0.32 | 0.72 | 2.44 | 2268 | 330 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JPF | 36478 | 2024-03-10 | 2023-06-11 | 3.02 | 3.21 | 3.41 | 3.3 | 0.006 | 1.76 | 0.0 | 0.27 | 15.61 | 0.00 | 2.214 | 5.45 | 0.46 | 2.7 | 97.3 | 0.0 | 2.25 | 0.48 | 0.75 | 2.58 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.05 | 0.00 | 2.153 | 8.17 | 2.75 | 3.0 | 97.0 | 0.0 | 1.86 | 0.41 | 0.45 | 0.78 | 2.79 | 2269 | 304 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 8JLX | 36407 | 2024-03-10 | 2023-06-03 | 3.0 | 3.13 | 2.80 | 3.1 | 0.004 | 0.75 | 0.0 | 0.05 | 14.32 | 0.01 | 2.247 | 12.73 | 0.00 | 11.9 | 88.1 | 0.0 | -2.27 | 0.54 | 0.71 | 2.31 | 3.1 | 0.004 | 0.70 | 0.0 | 0.05 | 17.49 | 0.00 | 2.131 | 12.73 | 3.14 | 10.5 | 89.5 | 0.0 | -1.92 | 0.40 | 0.53 | 0.73 | 2.62 | 2277 | 293 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8AZ4 | 15753 | 2024-03-10 | 2022-09-05 | 2.2 | 2.27 | 2.10 | 2.2 | 0.006 | 0.72 | 0.0 | 0.05 | 10.22 | 0.00 | 2.292 | 1.89 | 0.00 | 7.7 | 92.3 | 0.0 | -3.94 | 0.57 | 0.88 | 8.31 | 2.2 | 0.004 | 0.69 | 0.0 | 0.05 | 13.32 | 0.00 | 2.281 | 2.83 | 2.92 | 7.7 | 92.3 | 0.0 | -4.28 | 0.47 | 0.59 | 0.91 | 7.74 | 2280 | 280 | 20 | 0 | 10 | 100 | 0 | logfile |
✘ | 8EA0 | 27970 | 2024-03-10 | 2022-08-27 | 2.56 | 2.05 | 2.66 | 1.9 | 0.003 | 0.55 | 0.0 | 0.04 | 13.66 | 0.00 | 2.237 | 8.88 | 0.00 | 4.3 | 95.7 | 0.0 | -0.24 | 0.72 | 0.77 | 2.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2286 | 285 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7QL2 | 14061 | 2024-03-10 | 2021-12-19 | 2.95 | 2.96 | 2.65 | 3.1 | 0.010 | 2.11 | 2.0 | 0.11 | 10.98 | 0.01 | 2.674 | 0.00 | 0.00 | 7.6 | 92.4 | 0.0 | -2.82 | 0.30 | 0.74 | 4.50 | 3.3 | 0.003 | 0.54 | 0.0 | 0.05 | 12.51 | 0.00 | 2.548 | 1.31 | 1.48 | 10.4 | 89.6 | 0.0 | -3.05 | 1.13 | 0.23 | 0.72 | 3.90 | 2286 | 150 | 3 | 0 | 0 | 0 | 1179 | logfile |
✔ | 6QPi | 4614 | 2024-03-10 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |