Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WKT	21708	2023-04-19	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile
✔	6JC3	9793	2023-04-20	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	7XH8	33191	2023-04-19	2022-04-07	2.99	3.75	3.32	3.6	0.014	1.81	0.0	0.09	13.61	0.03	2.472	0.80	0.88	3.5	95.5	1.0	-1.88	0.61	0.58	1.19	3.3	0.003	0.85	0.0	0.04	15.31	0.00	2.111	19.43	4.09	6.0	94.0	0.0	-0.67	1.99	0.67	0.74	1.39	3161	404	3	0	0	0	0	logfile
✔	7TX6	26155	2023-04-19	2022-02-07	3.3	3.60	3.29	3.5	0.008	0.90	1.0	0.05	12.44	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.71	1.0	0.05	15.51	0.01	2.189	6.37	0.00	3.3	96.7	0.0	1.64	1.61	0.53	0.77	2.32	3169	398	1	0	2	0	0	logfile
✔	7WP0	32665	2023-04-19	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✔	6UWF	20922	2023-04-19	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.57	0.0	0.04	15.31	0.00	2.245	6.57	0.62	3.1	96.9	0.0	1.17	1.10	0.67	0.85	2.62	3178	417	1	0	2	0	0	logfile
✔	8ERQ	28558	2023-04-19	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.07	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.003	0.62	0.0	0.04	13.83	0.00	2.309	3.75	0.95	3.4	96.6	0.0	-0.14	1.00	0.66	0.83	3.66	3178	423	3	0	1	0	0	logfile
✔	7WRo	32734	2023-04-19	2022-01-27	3.4	3.62	—	3.6	0.008	1.11	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.003	0.62	0.0	0.04	15.33	0.00	2.268	13.22	0.87	3.9	96.1	0.0	-0.99	0.34	0.58	0.77	2.22	3179	412	3	0	0	0	0	logfile
✔	8DWi	27755	2023-04-19	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	7MKM	23899	2023-04-20	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.14	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	1.9	0.003	0.79	0.0	0.04	15.05	0.00	2.257	11.38	0.29	5.8	94.2	0.0	-2.36	0.60	0.53	0.62	1.67	3192	406	4	0	1	0	0	logfile
✔	7RU8	24699	2023-04-19	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.44	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.003	0.76	0.0	0.04	14.71	0.00	2.128	13.07	0.29	8.1	91.9	0.0	-1.30	1.48	0.78	0.75	1.12	3198	405	5	0	3	0	0	logfile
✔	7K9K	22751	2023-04-19	2020-09-29	3.14	3.44	3.39	3.5	0.006	0.96	0.0	0.06	13.51	0.01	2.188	11.03	0.00	3.8	96.2	0.0	-1.35	0.46	0.77	2.35	3.5	0.003	0.67	0.0	0.04	15.32	0.00	2.262	9.28	0.87	3.6	96.4	0.0	-0.79	0.45	0.46	0.78	2.30	3202	402	4	0	4	0	0	logfile
✔	7TX7	26156	2023-04-19	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✘	7QEV	13942	2023-04-19	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3204	383	6	0	8	8	0	logfile
✔	6X2Z	22014	2023-04-19	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.15	0.00	2.195	9.40	0.28	2.9	97.1	0.0	0.74	0.96	0.44	0.87	2.26	3205	420	1	0	3	0	0	logfile
✔	8EQT	28545	2023-04-19	2022-10-09	3.4	3.89	3.34	3.7	0.006	0.89	0.0	0.05	10.95	0.00	2.213	11.78	0.00	2.1	97.9	0.0	0.61	0.62	0.82	3.25	3.7	0.003	0.62	0.0	0.04	16.50	0.00	2.193	12.25	0.87	2.7	97.3	0.0	1.18	0.82	0.65	0.86	3.03	3206	382	4	0	4	0	0	logfile
✔	7PQQ	13596	2023-04-19	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.4	0.003	0.69	0.0	0.04	16.11	0.00	2.206	9.92	0.00	3.6	96.4	0.0	-1.59	0.48	0.44	0.75	2.63	3207	417	2	0	0	0	0	logfile
✔	7S15	24794	2023-04-19	2021-09-01	3.8	4.41	—	4.2	0.007	0.90	0.0	0.05	17.81	0.01	2.174	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	4.2	0.003	0.72	0.0	0.04	18.81	0.00	2.276	12.66	0.58	7.4	92.6	0.0	-1.02	0.67	0.49	0.76	0.81	3207	382	1	0	1	0	0	logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	8DEP	27394	2023-04-19	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile

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