Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FA2	28948	2023-08-09	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.04	14.46	0.00	2.218	8.87	0.67	0.0	100.0	0.0	5.30	0.38	0.76	0.79	0.78	2577	342	6	0	0	0	0	logfile
✔	6N37	9339	2023-08-09	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.78	0.0	0.04	18.44	0.00	2.275	19.32	1.20	11.8	88.2	0.0	-5.15	0.91	0.52	0.78	2.20	2580	360	10	0	0	0	0	logfile
✔	7UAK	26427	2023-08-09	2022-03-13	3.38	3.45	2.13	3.6	0.003	0.70	0.0	0.05	13.75	0.00	2.407	13.48	0.00	14.4	85.6	0.0	-2.82	0.31	0.67	2.41	3.6	0.004	0.76	0.0	0.05	16.77	0.00	2.270	8.54	0.00	20.3	79.7	0.0	-3.45	0.63	0.37	0.76	1.90	2586	372	6	0	0	0	0	logfile
✔	7V48	31703	2023-08-09	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.003	0.65	0.0	0.05	14.23	0.00	2.197	4.51	4.17	15.6	84.4	0.0	-5.01	0.50	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	7Xo3	33335	2023-08-09	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.7	0.003	0.56	0.0	0.05	16.32	0.00	2.293	2.44	3.03	9.8	90.2	0.0	-1.76	2.17	0.48	0.85	5.80	2598	378	6	0	0	0	0	logfile
✔	7Q67	13854	2023-08-09	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.003	0.90	0.0	0.05	18.07	0.00	2.112	24.32	0.73	19.4	80.6	0.0	-4.92	2.31	0.45	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	7WMM	32615	2023-08-09	2022-01-15	2.6	2.33	—	2.7	0.008	1.10	0.0	0.05	12.99	0.00	2.361	6.18	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.003	0.67	0.0	0.05	16.82	0.00	2.273	3.94	0.38	5.6	94.4	0.0	-1.93	0.51	0.52	0.89	5.74	2618	366	8	0	2	0	0	logfile
✔	7UL2	26589	2023-08-09	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✔	7YK2	33884	2023-08-09	2022-07-21	2.8	2.60	2.36	2.8	0.005	0.82	0.0	0.05	11.38	0.00	2.424	12.82	0.00	11.5	88.5	0.0	-3.89	0.42	0.78	3.09	2.8	0.004	0.65	0.0	0.05	15.54	0.00	2.328	6.50	2.59	9.0	91.0	0.0	-2.70	0.49	0.42	0.79	3.23	2628	378	6	0	0	0	0	logfile
✔	6LRQ	0958	2023-08-09	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.003	0.70	0.0	0.05	15.02	0.00	2.237	12.85	0.37	8.2	91.8	0.0	-2.72	0.95	0.45	0.69	1.94	2628	378	6	0	0	0	0	logfile
✔	7XJX	33236	2023-08-09	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.006	0.81	0.0	0.05	14.46	0.00	2.387	11.15	3.70	15.6	84.4	0.0	-3.69	1.14	0.45	0.81	5.25	2628	378	6	0	0	0	0	logfile
✔	7VZF	32227	2023-08-09	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	8AG3	15414	2023-08-09	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7TZ0	26201	2023-08-09	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7YPG	33999	2023-08-09	2022-08-03	2.5	2.00	2.09	3.0	0.008	0.80	0.0	0.06	14.50	0.00	2.331	9.02	0.00	12.3	87.7	0.0	-5.97	0.40	0.82	3.85	3.0	0.003	0.62	0.0	0.05	18.36	0.00	2.260	10.68	3.21	5.6	94.4	0.0	-5.21	0.66	0.41	0.82	3.09	2676	354	6	0	0	0	0	logfile
✔	6N3B	9350	2023-08-09	2018-11-14	3.8	3.75	—	4.0	0.010	1.21	0.0	0.05	11.40	0.01	2.253	20.70	0.00	13.7	86.3	0.0	-5.17	0.41	0.71	2.90	4.0	0.004	0.84	0.0	0.04	16.35	0.01	2.292	25.40	1.13	9.6	90.4	0.0	-5.16	1.50	0.42	0.70	1.16	2735	385	10	0	0	0	0	logfile
✔	6VPS	21316	2023-08-09	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	7LXX	23578	2023-08-09	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.19	0.0	0.06	10.12	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.004	0.68	0.0	0.04	14.31	0.00	2.133	8.88	4.21	4.2	95.8	0.0	-0.39	1.60	0.75	0.81	4.41	2740	352	5	0	4	0	0	logfile
✔	7QK3	14030	2023-08-09	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.72	0.0	0.05	16.27	0.00	2.309	2.92	0.64	2.8	97.2	0.0	-2.78	2.36	0.39	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7X34	32978	2023-08-09	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	18.59	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.2	0.005	0.85	0.0	0.04	20.14	0.00	2.077	35.35	0.00	5.1	94.9	0.0	0.09	0.71	0.21	0.78	1.18	2762	100	2	94	0	0	0	logfile

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