Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CU8	7619	2023-02-17	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.003	0.71	0.0	0.05	13.21	0.00	2.161	12.65	0.65	10.0	90.0	0.0	-3.04	1.78	0.42	0.72	2.87	2880	410	10	0	0	0	0	logfile
✔	7RTV	24690	2023-02-17	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.88	0.0	0.04	18.40	0.00	2.174	15.94	0.97	3.0	97.0	0.0	2.97	1.77	0.41	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	6RiU	4898	2023-02-17	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.64	0.0	0.03	15.97	0.00	2.064	12.47	0.00	3.9	96.1	0.0	-0.16	1.43	0.61	0.75	0.76	2882	182	2	0	0	0	1430	logfile
✔	7CAH	30331	2023-02-17	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✔	6HUD	0274	2023-02-17	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.72	0.0	0.04	12.84	0.00	2.150	15.41	0.61	3.3	96.7	0.0	-5.02	1.49	0.59	0.78	—	2905	385	5	0	0	0	0	logfile
✘	7YPQ	34011	2023-02-17	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✔	7E3C	30979	2023-02-17	2021-02-08	4.2	3.87	—	3.7	0.026	1.55	0.0	0.05	13.81	0.01	2.151	21.49	0.00	17.2	82.3	0.5	-3.63	0.79	0.79	—	3.7	0.004	0.74	0.0	0.05	13.74	0.00	2.114	15.30	0.00	12.3	87.7	0.0	-2.92	1.13	0.79	0.79	—	2937	405	4	0	1	0	0	logfile
✔	7YL3	33902	2023-02-17	2022-07-25	3.2	3.58	3.19	3.5	0.011	2.22	0.0	0.06	10.67	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.007	0.82	0.0	0.05	13.30	0.00	2.246	11.74	0.31	12.8	87.2	0.0	-4.85	1.42	0.43	0.77	4.87	2958	396	12	0	0	0	0	logfile
✔	7YL0	33901	2023-02-17	2022-07-25	3.2	3.47	3.15	3.4	0.016	2.51	0.0	0.11	14.66	0.01	2.515	18.86	0.00	5.0	95.0	0.0	-4.14	0.41	0.74	4.76	3.4	0.006	0.87	0.0	0.05	14.02	0.00	2.101	15.37	0.62	14.7	85.3	0.0	-4.64	1.75	0.44	0.77	4.96	2958	396	12	0	0	0	0	logfile
✔	6Y1A	10669	2023-02-17	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.005	0.75	0.0	0.04	11.01	0.00	2.047	15.36	0.00	9.8	90.2	0.0	-4.85	1.54	0.57	0.75	—	2960	400	32	0	16	0	0	logfile
✔	7YL7	33903	2023-02-17	2022-07-25	3.3	3.54	3.17	3.5	0.004	1.05	0.0	0.04	11.58	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.006	0.69	0.0	0.05	13.21	0.00	2.149	8.89	0.31	12.0	88.0	0.0	-5.07	0.83	0.44	0.78	5.15	2988	402	12	0	0	0	0	logfile
✔	7QEU	13941	2023-02-17	2021-12-03	2.7	3.39	—	3.0	0.009	0.68	0.0	0.04	13.62	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.55	0.0	0.04	15.06	0.00	2.167	4.16	1.55	2.0	98.0	0.0	3.32	0.41	0.79	0.88	2.56	3002	359	6	0	6	7	0	logfile
✔	7K45	22660	2023-02-17	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.004	0.70	0.0	0.05	14.21	0.01	2.379	9.20	0.00	3.6	96.4	0.0	0.20	1.30	0.81	0.81	2.76	3038	419	4	0	2	0	0	logfile
✔	7QEo	13935	2023-02-17	2021-12-03	2.9	3.47	—	3.1	0.008	0.69	0.0	0.04	13.62	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.64	0.0	0.04	15.53	0.00	2.191	6.69	0.61	2.5	97.5	0.0	2.85	0.47	0.77	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7FiJ	31599	2023-02-17	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	7E39	30977	2023-02-17	2021-02-08	3.7	3.11	—	2.9	0.005	0.76	0.0	0.05	14.34	0.01	2.130	15.98	0.00	10.1	89.9	0.0	-3.52	0.50	0.74	2.30	2.9	0.004	0.68	0.0	0.05	16.01	0.00	2.177	13.75	0.68	8.9	91.1	0.0	-2.55	0.42	0.50	0.75	2.09	3074	414	4	0	1	0	0	logfile
✔	7QES	13939	2023-02-17	2021-12-03	2.6	3.37	—	3.0	0.009	0.66	0.0	0.04	13.87	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.61	0.0	0.04	15.44	0.00	2.157	4.06	0.91	3.6	96.4	0.0	2.59	1.24	0.78	0.86	2.82	3076	366	6	0	10	14	0	logfile
✔	6X0U	21984	2023-02-17	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	6V4D	21040	2023-02-17	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.24	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.85	0.0	0.04	16.59	0.00	2.082	12.48	0.68	5.3	94.7	0.0	-0.62	0.65	0.47	0.78	1.50	3095	422	1	0	0	0	0	logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile

• ← previous
• Page 7 of 353
• next →