Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HHo	34805	2023-04-20	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	14.81	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.003	0.61	0.0	0.04	16.30	0.00	2.139	14.64	0.30	2.2	97.8	0.0	1.41	0.39	0.47	0.80	1.96	3274	416	1	0	1	0	0	logfile
✘	8HJ9	34835	2023-04-20	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✔	8HiZ	34830	2023-04-20	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✔	8HiQ	34826	2023-04-20	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	15.96	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.58	0.0	0.04	16.76	0.01	2.272	14.79	0.00	3.6	96.4	0.0	1.72	1.06	0.43	0.78	2.24	3274	416	1	0	1	0	0	logfile
✔	7SWN	25476	2023-04-20	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7WR8	32718	2023-04-19	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.75	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.68	0.0	0.05	15.46	0.00	2.127	12.59	0.28	10.0	90.0	0.0	-2.63	0.36	0.49	0.77	2.73	3286	417	4	0	3	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7WRJ	32728	2023-04-20	2022-01-26	4.08	4.24	—	4.2	0.009	1.32	0.0	0.07	14.14	0.01	2.255	12.35	0.55	11.5	87.8	0.7	-2.57	0.62	0.70	—	4.1	0.004	0.80	0.0	0.05	13.80	0.01	2.102	18.22	0.00	10.2	89.3	0.5	-1.92	1.39	0.65	0.75	—	3289	418	4	0	2	0	0	logfile
✔	6JND	9848	2023-04-19	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.004	0.65	0.0	0.05	15.55	0.00	2.233	8.48	0.29	4.3	95.7	0.0	-0.90	1.27	0.48	0.87	2.03	3294	419	1	0	1	0	0	logfile
✔	6JNC	9847	2023-04-20	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✔	7K9i	22749	2023-04-20	2020-09-29	3.3	3.72	3.48	3.6	0.005	0.72	0.0	0.05	12.70	0.00	2.118	12.07	0.00	3.6	96.4	0.0	-0.86	0.55	0.82	3.38	3.6	0.003	0.73	0.0	0.05	14.65	0.00	2.159	12.54	0.85	4.8	95.2	0.0	-0.86	1.61	0.53	0.82	2.66	3295	423	4	0	1	0	0	logfile
✔	7WXG	32878	2023-04-20	2022-02-14	4.2	4.21	3.56	4.2	0.012	1.07	0.0	0.05	14.22	0.00	2.184	12.87	0.29	10.7	89.3	0.0	-5.16	0.51	0.80	—	4.2	0.002	0.66	0.0	0.04	14.08	0.00	2.324	9.54	0.00	5.8	94.2	0.0	-0.37	1.29	0.51	0.78	—	3295	430	1	0	1	0	0	logfile
✔	7RR0	24649	2023-04-20	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.20	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.73	0.0	0.04	16.03	0.00	2.243	12.40	0.28	2.9	97.1	0.0	0.12	1.25	0.76	0.80	2.78	3297	422	4	0	1	0	0	logfile
✔	8GoF	34177	2023-04-20	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	12.71	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.58	0.0	0.04	14.49	0.00	2.219	8.85	1.14	2.5	97.5	0.0	1.11	1.48	0.44	0.82	2.90	3299	407	1	0	1	0	0	logfile
✔	7E3B	30978	2023-04-20	2021-02-08	4.2	4.05	—	4.0	0.006	0.81	0.0	0.05	13.28	0.00	2.241	16.63	0.00	8.2	91.8	0.0	-2.04	0.74	0.84	—	4.0	0.003	0.70	0.0	0.05	13.19	0.00	2.247	15.70	0.00	5.8	94.2	0.0	-1.19	0.41	0.74	0.83	—	3299	421	4	0	1	0	0	logfile
✔	7ZH3	14720	2023-04-20	2022-04-05	2.5	2.66	2.45	2.7	0.010	0.84	0.0	0.06	13.33	0.01	2.209	7.02	0.00	3.8	96.2	0.0	-1.40	0.59	0.87	4.43	2.7	0.004	0.55	0.0	0.04	16.22	0.00	2.265	6.87	0.80	2.0	98.0	0.0	1.15	1.11	0.55	0.86	3.86	3301	407	4	0	1	38	0	logfile
✔	7XQ1	33388	2023-04-20	2022-05-06	3.4	3.32	3.36	3.5	0.012	1.53	1.0	0.06	13.52	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.62	0.0	0.04	15.87	0.00	2.120	8.80	0.00	2.3	97.7	0.0	0.66	1.19	0.50	0.81	1.80	3302	400	1	0	2	0	0	logfile
✔	7QDo	13922	2023-04-20	2021-11-27	3.6	3.83	3.30	3.7	0.005	0.82	0.0	0.05	11.62	0.00	2.223	7.51	0.00	10.0	90.0	0.0	-0.82	0.71	0.74	3.77	3.7	0.004	0.76	0.0	0.05	15.66	0.00	2.171	15.02	2.12	9.0	91.0	0.0	-0.62	0.71	0.70	0.75	3.03	3304	424	2	0	0	0	0	logfile
✔	7WP1	32666	2023-04-20	2022-01-22	3.77	3.91	—	3.9	0.006	1.17	0.0	0.07	14.56	0.02	2.338	3.88	0.00	12.2	87.5	0.2	-5.40	0.64	0.78	2.71	3.9	0.004	0.80	0.0	0.05	16.26	0.00	2.064	13.18	1.13	11.8	88.2	0.0	-3.82	0.96	0.63	0.78	2.11	3305	423	4	0	2	0	0	logfile
✘	7THE	25893	2023-04-20	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.73	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3305	423	4	0	1	0	0	logfile

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