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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6MLU | 9146 | 2024-03-10 | 2018-09-28 | 4.0 | 4.03 | — | 4.0 | 0.005 | 1.05 | 0.0 | 0.06 | 9.86 | 0.01 | 2.406 | 5.97 | 0.69 | 10.6 | 89.4 | 0.0 | -4.38 | 0.40 | 0.78 | — | 4.0 | 0.005 | 1.00 | 0.0 | 0.06 | 17.73 | 0.01 | 2.186 | 30.83 | 7.99 | 13.6 | 86.4 | 0.0 | -2.59 | 2.52 | 0.45 | 0.78 | — | 2516 | 306 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MJi | 23874 | 2024-03-10 | 2021-04-20 | 2.81 | 3.32 | — | 3.2 | 0.006 | 0.81 | 0.0 | 0.05 | 12.49 | 0.01 | 2.367 | 2.85 | 0.00 | 2.8 | 97.2 | 0.0 | -0.83 | 0.56 | 0.84 | 4.52 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.34 | 0.00 | 2.309 | 8.75 | 2.57 | 2.2 | 97.8 | 0.0 | 0.13 | 1.43 | 0.57 | 0.85 | 4.44 | 2522 | 320 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7UL4 | 26591 | 2024-03-10 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✔ | 7YNR | 33969 | 2024-03-10 | 2022-07-31 | 2.9 | 2.79 | 1.55 | 3.2 | 0.003 | 0.46 | 0.0 | 0.05 | 10.05 | 0.00 | 2.424 | 7.49 | 0.00 | 1.7 | 98.3 | 0.0 | -3.30 | 0.41 | 0.87 | 6.76 | 3.2 | 0.004 | 0.48 | 0.0 | 0.05 | 12.92 | 0.00 | 2.401 | 4.42 | 0.00 | 4.2 | 95.8 | 0.0 | -1.94 | 0.22 | 0.42 | 0.88 | 6.14 | 2526 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNS | 33970 | 2024-03-10 | 2022-07-31 | 3.0 | 2.79 | 2.25 | 3.1 | 0.009 | 0.66 | 0.0 | 0.06 | 11.51 | 0.00 | 2.233 | 10.18 | 0.00 | 5.1 | 94.9 | 0.0 | -3.28 | 0.51 | 0.87 | 6.08 | 3.1 | 0.006 | 0.63 | 0.0 | 0.05 | 14.07 | 0.00 | 2.219 | 6.72 | 2.71 | 4.8 | 95.2 | 0.0 | -2.09 | 0.90 | 0.49 | 0.88 | 4.99 | 2526 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo2 | 33334 | 2024-03-10 | 2022-04-30 | 3.0 | 2.83 | 2.60 | 2.9 | 0.001 | 0.38 | 0.0 | 0.05 | 18.12 | 0.00 | 2.586 | 6.10 | 0.00 | 5.0 | 95.0 | 0.0 | -0.89 | 0.49 | 0.87 | 6.67 | 2.9 | 0.009 | 0.69 | 0.0 | 0.06 | 19.10 | 0.00 | 2.285 | 4.76 | 4.65 | 9.4 | 90.6 | 0.0 | -1.72 | 1.12 | 0.51 | 0.89 | 6.72 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2024-03-10 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.003 | 0.38 | 0.0 | 0.03 | 15.19 | 0.00 | 2.148 | 5.65 | 1.35 | 0.0 | 100.0 | 0.0 | 5.64 | 0.85 | 0.82 | 0.84 | 1.98 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo1 | 33333 | 2024-03-10 | 2022-04-30 | 3.0 | 2.71 | 1.85 | 3.1 | 0.002 | 0.53 | 0.0 | 0.05 | 16.42 | 0.00 | 2.269 | 6.86 | 0.00 | 5.0 | 95.0 | 0.0 | -2.46 | 0.45 | 0.86 | 4.75 | 3.1 | 0.007 | 0.66 | 0.0 | 0.05 | 18.46 | 0.00 | 2.280 | 3.05 | 1.55 | 8.3 | 91.7 | 0.0 | -2.15 | 0.32 | 0.44 | 0.87 | 5.88 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo0 | 33332 | 2024-03-10 | 2022-04-30 | 3.0 | 2.48 | 1.85 | 3.1 | 0.001 | 0.39 | 0.0 | 0.05 | 16.62 | 0.00 | 2.280 | 4.76 | 0.00 | 5.0 | 95.0 | 0.0 | -2.66 | 0.47 | 0.87 | 7.11 | 3.1 | 0.005 | 0.49 | 0.0 | 0.05 | 17.10 | 0.00 | 2.237 | 6.29 | 2.71 | 9.2 | 90.8 | 0.0 | -2.93 | 0.30 | 0.47 | 0.88 | 6.95 | 2550 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FA1 | 28947 | 2024-03-10 | 2022-11-25 | 2.51 | 2.37 | 2.87 | 2.7 | 0.006 | 0.57 | 0.0 | 0.04 | 15.92 | 0.00 | 2.286 | 8.14 | 0.00 | 4.6 | 95.4 | 0.0 | 0.73 | 0.77 | 0.80 | 1.71 | 2.7 | 0.003 | 0.49 | 0.0 | 0.04 | 16.19 | 0.00 | 2.354 | 8.53 | 1.35 | 0.9 | 99.1 | 0.0 | 5.07 | 0.85 | 0.77 | 0.79 | 1.59 | 2553 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RZV | 24779 | 2024-03-10 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.36 | 0.0 | 0.03 | 16.04 | 0.00 | 2.237 | 5.05 | 1.35 | 0.0 | 100.0 | 0.0 | 5.77 | 0.88 | 0.83 | 0.83 | 1.74 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNo | 33967 | 2024-03-10 | 2022-07-31 | 2.8 | 2.92 | 2.23 | 3.1 | 0.008 | 0.79 | 0.0 | 0.05 | 12.19 | 0.00 | 2.252 | 22.12 | 0.00 | 7.3 | 92.7 | 0.0 | -3.47 | 0.41 | 0.77 | 5.69 | 3.1 | 0.003 | 0.67 | 0.0 | 0.05 | 14.57 | 0.00 | 2.263 | 8.01 | 1.94 | 2.5 | 97.5 | 0.0 | -2.04 | 0.36 | 0.42 | 0.79 | 4.68 | 2562 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TiK | 25912 | 2024-03-10 | 2022-01-13 | 2.4 | 2.38 | — | 2.0 | 0.007 | 0.49 | 0.0 | 0.04 | 16.31 | 0.00 | 2.218 | 7.94 | 0.00 | 4.6 | 95.4 | 0.0 | 1.31 | 0.77 | 0.80 | 1.31 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.39 | 0.00 | 2.243 | 8.33 | 1.35 | 0.6 | 99.4 | 0.0 | 6.01 | 0.91 | 0.79 | 0.81 | 1.38 | 2565 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YNP | 33968 | 2024-03-10 | 2022-07-31 | 2.8 | 2.38 | 2.15 | 3.4 | 0.012 | 0.97 | 0.0 | 0.06 | 13.69 | 0.00 | 2.265 | 10.48 | 0.00 | 6.5 | 93.5 | 0.0 | -3.88 | 0.39 | 0.78 | 4.28 | 3.5 | 0.006 | 0.61 | 0.0 | 0.05 | 15.54 | 0.00 | 2.173 | 7.81 | 5.04 | 6.8 | 93.2 | 0.0 | -2.51 | 1.78 | 0.34 | 0.80 | 4.03 | 2568 | 366 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 8FA2 | 28948 | 2024-03-10 | 2022-11-25 | 2.82 | 2.48 | 3.15 | 2.1 | 0.006 | 0.55 | 0.0 | 0.04 | 13.54 | 0.00 | 2.297 | 6.56 | 0.00 | 1.8 | 98.2 | 0.0 | -0.12 | 0.76 | 0.79 | 0.72 | 2.0 | 0.003 | 0.41 | 0.0 | 0.03 | 14.28 | 0.00 | 2.276 | 8.68 | 0.67 | 0.0 | 100.0 | 0.0 | 5.58 | 0.34 | 0.76 | 0.79 | 0.70 | 2577 | 342 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N37 | 9339 | 2024-03-10 | 2018-11-14 | 3.8 | 3.51 | — | 4.2 | 0.009 | 1.42 | 0.0 | 0.06 | 16.98 | 0.01 | 2.399 | 13.15 | 0.00 | 14.7 | 85.3 | 0.0 | -5.92 | 0.51 | 0.77 | 3.18 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 18.81 | 0.00 | 2.238 | 21.91 | 7.60 | 12.6 | 87.4 | 0.0 | -5.15 | 0.87 | 0.52 | 0.78 | 2.12 | 2580 | 360 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UAK | 26427 | 2024-03-10 | 2022-03-13 | 3.38 | 3.45 | 2.13 | 3.6 | 0.003 | 0.70 | 0.0 | 0.05 | 13.75 | 0.00 | 2.407 | 13.48 | 0.00 | 14.4 | 85.6 | 0.0 | -2.82 | 0.31 | 0.67 | 2.41 | 3.6 | 0.004 | 0.71 | 0.0 | 0.05 | 17.15 | 0.00 | 2.293 | 6.45 | 4.92 | 19.2 | 80.8 | 0.0 | -3.49 | 0.62 | 0.36 | 0.76 | 1.84 | 2586 | 372 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Xo3 | 33335 | 2024-03-10 | 2022-04-30 | 2.6 | 2.32 | 1.68 | 2.7 | 0.002 | 0.41 | 0.0 | 0.05 | 12.37 | 0.00 | 2.223 | 4.70 | 0.00 | 8.2 | 91.8 | 0.0 | -3.31 | 0.45 | 0.81 | 5.78 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 16.17 | 0.00 | 2.274 | 2.63 | 3.03 | 11.7 | 88.3 | 0.0 | -1.86 | 0.39 | 0.50 | 0.85 | 5.90 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V48 | 31703 | 2024-03-10 | 2021-08-12 | 3.0 | 2.27 | — | 3.3 | 0.002 | 0.48 | 0.0 | 0.05 | 12.91 | 0.00 | 2.295 | 8.64 | 0.00 | 9.8 | 90.2 | 0.0 | -5.61 | 0.37 | 0.75 | 4.10 | 3.3 | 0.004 | 0.65 | 0.0 | 0.05 | 14.15 | 0.00 | 2.253 | 4.89 | 2.65 | 21.3 | 78.7 | 0.0 | -4.60 | 0.41 | 0.39 | 0.76 | 4.74 | 2598 | 378 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q67 | 13854 | 2024-03-10 | 2021-11-05 | 3.37 | 3.41 | 2.44 | 3.4 | 0.020 | 2.21 | 0.0 | 0.14 | 14.47 | 0.01 | 2.280 | 12.16 | 8.00 | 16.1 | 83.9 | 0.0 | -4.98 | 0.51 | 0.71 | 2.52 | 3.5 | 0.004 | 1.00 | 0.0 | 0.05 | 19.06 | 0.00 | 2.149 | 28.31 | 14.91 | 19.1 | 80.9 | 0.0 | -5.06 | 2.51 | 0.45 | 0.70 | 0.92 | 2618 | 363 | 11 | 0 | 0 | 0 | 0 | logfile |