Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LCJ	23275	2023-07-03	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7WR9	32719	2023-07-03	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	13.72	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.003	0.60	0.0	0.04	15.21	0.01	2.184	5.80	0.00	7.2	92.6	0.2	-1.66	0.35	0.56	0.83	2.44	3266	411	5	0	5	0	0	logfile
✔	7WRY	32737	2023-07-03	2022-01-27	3.28	3.44	—	3.4	0.006	0.91	0.0	0.06	14.45	0.01	2.313	3.13	0.29	6.7	93.3	0.0	-2.76	0.58	0.84	4.11	3.4	0.004	0.59	0.0	0.04	15.81	0.00	2.227	9.38	0.86	6.2	93.8	0.0	-1.47	0.39	0.57	0.85	4.21	3267	413	4	0	3	0	0	logfile
✔	7WRZ	32738	2023-07-03	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.70	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.003	0.55	0.0	0.04	15.74	0.00	2.234	6.43	0.00	5.4	94.3	0.2	-0.80	1.14	0.62	0.85	3.37	3270	414	4	0	2	0	0	logfile
✔	8HiQ	34826	2023-07-03	2022-11-21	3.2	3.35	3.10	3.3	0.005	0.74	0.0	0.04	15.96	0.01	2.284	14.48	0.00	3.9	96.1	0.0	1.52	0.43	0.77	2.29	3.3	0.003	0.58	0.0	0.04	16.76	0.01	2.272	14.79	0.00	3.6	96.4	0.0	1.72	1.06	0.43	0.78	2.24	3274	416	1	0	1	0	0	logfile
✔	8HJ3	34831	2023-07-03	2022-11-22	3.29	3.43	3.19	3.3	0.005	0.80	0.0	0.05	14.92	0.01	2.200	16.79	0.30	3.6	96.4	0.0	1.21	0.46	0.76	2.55	3.3	0.004	0.65	0.0	0.04	16.20	0.00	2.165	16.79	0.30	3.4	96.6	0.0	0.77	0.38	0.47	0.79	2.05	3274	416	1	0	1	0	0	logfile
✔	8HHo	34805	2023-07-03	2022-11-16	3.2	3.36	3.02	3.3	0.005	0.76	0.0	0.05	14.81	0.01	2.169	14.02	0.30	2.2	97.8	0.0	1.56	0.46	0.78	2.53	3.2	0.003	0.61	0.0	0.04	16.30	0.00	2.139	14.64	0.30	2.2	97.8	0.0	1.41	0.39	0.47	0.80	1.96	3274	416	1	0	1	0	0	logfile
✔	8HiZ	34830	2023-07-03	2022-11-22	3.08	3.26	2.97	3.2	0.004	0.70	0.0	0.04	15.48	0.00	2.324	14.33	0.30	2.9	97.1	0.0	1.51	0.40	0.77	2.44	3.2	0.003	0.62	0.0	0.04	16.36	0.00	2.104	13.25	0.30	3.9	96.1	0.0	0.78	1.04	0.40	0.80	1.85	3274	416	1	0	1	0	0	logfile
✘	8HJ9	34835	2023-07-03	2022-11-22	3.12	3.29	3.00	3.2	0.004	0.65	0.0	0.04	15.54	0.00	2.234	10.94	0.00	2.7	97.3	0.0	1.80	0.43	0.76	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3274	416	1	0	1	0	0	logfile
✔	8HBV	34644	2023-07-03	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	14.34	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.52	0.0	0.04	16.74	0.00	2.228	6.11	0.59	2.0	98.0	0.0	2.56	1.72	0.59	0.89	3.85	3279	414	3	0	3	0	0	logfile
✔	7SWN	25476	2023-07-03	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.82	0.0	0.05	13.82	0.01	2.261	21.52	0.00	11.3	88.7	0.0	-3.20	2.08	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7WR8	32718	2023-07-03	2022-01-26	3.5	3.74	—	3.8	0.008	1.16	0.0	0.06	13.75	0.01	2.230	6.22	0.00	12.5	87.5	0.0	-3.48	0.51	0.78	3.43	3.8	0.004	0.68	0.0	0.05	15.46	0.00	2.127	12.59	0.28	10.0	90.0	0.0	-2.63	0.36	0.49	0.77	2.73	3286	417	4	0	3	0	0	logfile
✔	7JLX	22383	2023-07-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7WRJ	32728	2023-07-03	2022-01-26	4.08	4.24	—	4.2	0.009	1.32	0.0	0.07	14.14	0.01	2.255	12.35	0.55	11.5	87.8	0.7	-2.57	0.62	0.70	—	4.1	0.004	0.80	0.0	0.05	13.80	0.01	2.102	18.22	0.00	10.2	89.3	0.5	-1.92	1.39	0.65	0.75	—	3289	418	4	0	2	0	0	logfile
✔	8iDN	35369	2023-07-03	2023-02-13	3.35	3.49	3.33	3.4	0.003	0.58	0.0	0.05	12.55	0.00	2.120	7.91	0.56	4.4	95.4	0.2	-0.05	0.67	0.76	2.85	3.4	0.003	0.61	0.0	0.04	14.36	0.00	2.199	8.84	0.00	4.8	94.9	0.2	-0.39	0.75	0.68	0.78	2.44	3292	419	4	0	4	0	0	logfile
✔	8J1N	35928	2023-07-03	2023-04-13	2.51	2.65	2.47	2.7	0.009	1.01	0.0	0.05	14.64	0.00	2.219	8.99	0.00	2.9	97.1	0.0	1.72	0.60	0.79	3.77	2.7	0.003	0.52	0.0	0.04	16.76	0.00	2.257	6.56	1.18	1.7	98.3	0.0	3.31	0.57	0.63	0.87	3.43	3292	414	3	0	4	0	0	logfile
✔	8CUJ	27001	2023-07-03	2022-05-17	3.04	2.55	3.04	3.2	0.002	0.53	0.0	0.04	14.73	0.00	2.276	5.90	0.00	2.1	97.9	0.0	1.48	0.44	0.80	0.86	3.1	0.003	0.58	0.0	0.04	15.45	0.00	2.240	6.34	0.00	2.1	97.9	0.0	1.66	0.90	0.44	0.80	1.24	3293	433	1	0	0	1	0	logfile
✔	8CUD	26998	2023-07-03	2022-05-17	2.94	2.75	2.95	2.8	0.005	0.67	0.0	0.05	15.61	0.00	2.433	3.10	0.00	1.9	98.1	0.0	1.42	0.49	0.83	1.26	2.8	0.002	0.49	0.0	0.04	17.07	0.00	2.207	4.57	2.22	1.4	98.6	0.0	2.06	0.93	0.48	0.84	1.47	3294	433	1	0	0	2	0	logfile
✔	6JNC	9847	2023-07-03	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✔	6JND	9848	2023-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.004	0.65	0.0	0.05	15.55	0.00	2.233	8.48	0.29	4.3	95.7	0.0	-0.90	1.27	0.48	0.87	2.03	3294	419	1	0	1	0	0	logfile

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