Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UZ0	20949	2021-08-07	2019-11-14	3.24	3.60	—	3.6	0.018	1.18	5.0	0.15	19.55	0.01	0.584	27.36	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.005	0.81	0.0	0.04	18.16	0.01	2.146	14.49	1.36	7.5	92.3	0.3	-0.43	0.68	0.47	0.77	1.46	9557	1138	1	0	26	0	0	logfile
✔	6UM1	20815	2021-08-08	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.16	0.01	2.014	9.59	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.007	0.90	0.0	0.05	16.50	0.01	2.102	16.08	0.47	10.9	89.0	0.1	-3.11	0.63	0.72	0.75	1.91	17134	2208	1	0	8	0	0	logfile
✔	6NT3	0500	2021-08-08	2019-01-28	3.4	3.96	3.65	3.9	0.022	1.38	0.0	0.39	15.62	0.01	2.140	11.10	0.53	13.2	86.3	0.5	-4.75	0.50	0.79	1.96	3.9	0.013	1.39	1.0	0.05	16.47	0.01	1.735	18.64	0.09	9.9	89.9	0.2	-2.87	0.48	0.48	0.79	1.47	10934	1278	1	0	20	0	0	logfile
✔	6oEU	7795	2021-08-07	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.003	0.68	0.0	0.04	16.82	0.01	2.237	10.45	0.14	7.4	92.6	0.0	-0.20	1.54	0.47	0.69	1.07	7310	964	1	0	8	0	0	logfile
✘	6KWX	0780	2021-08-08	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.08	12.88	0.01	1.425	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14227	1751	1	0	2	0	0	logfile
✔	6CMX	7526	2021-08-08	2018-03-06	3.1	3.31	—	3.3	0.008	1.00	0.0	0.14	13.02	0.01	1.638	21.12	1.51	9.6	90.2	0.2	-3.85	0.72	0.76	3.77	3.3	0.004	0.72	0.0	0.05	16.32	0.00	2.122	12.66	0.50	10.1	89.9	0.0	-2.26	0.73	0.75	0.79	3.21	10139	1300	1	0	17	0	0	logfile
✔	6JNC	9847	2021-08-07	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.002	0.55	0.0	0.04	15.76	0.00	2.292	4.85	0.29	2.4	97.6	0.0	-0.33	1.23	0.51	0.88	2.30	3294	419	1	0	1	0	0	logfile
✔	6KZo	0791	2021-08-07	2019-09-25	3.3	3.57	—	3.5	0.019	1.74	3.0	0.21	16.02	0.01	2.196	35.83	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.014	1.32	1.0	0.04	16.57	0.00	2.103	10.59	0.47	3.6	96.3	0.1	0.39	1.33	0.61	0.83	2.07	8238	967	1	0	22	0	0	logfile
✔	6JXA	9892	2021-08-08	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	28.59	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.1	0.005	1.04	0.0	0.05	11.50	0.01	2.125	24.11	0.00	18.4	78.8	2.9	-2.88	1.81	0.66	0.65	—	14100	2244	1	0	0	0	0	logfile
✔	6UZ3	20951	2021-08-07	2019-11-14	3.5	3.88	—	3.8	0.019	1.11	3.0	0.12	18.74	0.02	1.260	31.69	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.004	0.86	0.0	0.05	17.44	0.01	2.127	19.22	0.53	7.1	92.8	0.1	-0.57	1.30	0.42	0.70	0.87	9446	1126	1	0	25	0	0	logfile
✔	6JND	9848	2021-08-07	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.63	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.003	0.65	0.0	0.04	15.81	0.00	2.264	6.82	0.00	3.1	96.9	0.0	-0.91	0.94	0.48	0.87	2.13	3294	419	1	0	1	0	0	logfile
✔	6JXC	9893	2021-08-08	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	3.96	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.004	0.86	0.0	0.04	12.57	0.00	2.029	12.90	0.00	13.6	84.4	2.0	-0.14	1.08	0.56	0.70	—	15270	2345	1	0	0	0	0	logfile
✔	6DMB	7963	2021-08-07	2018-06-04	3.9	4.13	—	4.0	0.019	1.77	0.0	0.20	13.99	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.1	0.004	0.87	0.0	0.04	16.02	0.01	2.154	13.51	0.24	12.4	87.6	0.0	-0.69	1.46	0.61	0.78	0.79	7945	990	1	0	9	0	0	logfile
✘	5XJY	6724	2021-08-08	2017-05-04	4.1	4.17	—	4.1	0.010	1.29	0.0	0.07	12.18	0.01	2.200	9.20	1.27	14.1	85.8	0.2	-6.01	0.64	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12785	1901	1	0	12	0	0	logfile
✔	6DMo	7964	2021-08-07	2018-06-05	4.1	4.16	—	4.1	0.008	1.27	0.0	0.06	13.66	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.003	0.85	0.0	0.05	13.40	0.00	2.073	14.31	0.00	9.9	90.1	0.0	-0.61	1.86	0.59	0.73	—	7853	982	1	0	7	0	0	logfile
✔	5X0M	6698	2021-08-08	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	52.87	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	3.8	0.009	1.18	0.0	0.05	17.53	0.01	1.895	22.62	0.28	10.9	88.4	0.7	-1.15	2.07	0.53	0.75	1.63	10654	1323	1	0	20	0	0	logfile
✔	3JD8	6640	2021-08-08	2016-05-01	4.43	4.58	—	4.4	0.018	1.55	5.0	0.24	16.78	0.02	1.335	75.85	11.82	11.9	79.6	8.5	-3.29	0.54	0.62	—	4.4	0.004	0.94	0.0	0.08	12.33	0.00	2.102	19.30	0.00	8.3	90.7	1.1	-0.52	1.31	0.57	0.73	—	8050	1133	1	0	25	0	0	logfile
✔	6i5A	4413	2021-08-07	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.57	0.0	0.04	16.09	0.00	2.335	3.77	1.48	1.3	98.7	0.0	2.26	1.22	0.30	0.87	4.44	1206	153	1	0	0	0	0	logfile
✔	6oR5	9032	2021-08-08	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.59	0.0	0.04	9.02	0.00	2.144	4.78	0.00	13.4	86.6	0.0	-1.26	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	3JBS	6478	2021-08-07	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.67	0.0	0.04	17.78	0.00	2.328	6.55	1.97	1.7	98.3	0.0	1.16	1.33	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile

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