Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7P06	13145	2022-07-05	2021-06-29	3.77	4.42	—	4.0	0.005	0.71	0.0	0.04	13.79	0.01	1.299	9.20	0.00	5.5	94.5	0.0	-0.50	0.71	0.77	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21476	1350	1	0	3	0	10638	logfile
✘	7S9Z	24942	2022-07-03	2021-09-21	4.14	4.38	—	4.3	0.006	0.81	1.0	0.04	13.12	0.00	1.246	10.18	0.00	10.6	89.4	0.0	-2.53	0.66	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7274	890	1	0	2	0	0	logfile
✔	6XMS	22262	2022-07-03	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.003	0.56	0.0	0.04	14.25	0.00	1.831	4.83	0.11	3.9	96.1	0.0	0.14	0.36	0.74	0.89	1.89	8389	1091	1	0	2	0	0	logfile
✔	7ASK	11895	2022-07-03	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.61	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.28	3.0	0.05	15.61	0.01	1.982	20.29	0.00	19.5	78.9	1.6	-3.52	1.30	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✘	7S9Y	24941	2022-07-03	2021-09-21	3.56	3.89	—	3.9	0.007	0.93	0.0	0.05	13.74	0.01	1.241	10.16	0.00	8.2	91.8	0.0	-1.32	0.69	0.82	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7395	901	1	0	3	0	0	logfile
✔	7NUR	12600	2022-07-03	2021-03-13	3.125	3.29	—	3.3	0.007	0.77	0.0	0.05	14.31	0.01	2.174	5.26	0.11	7.7	92.0	0.3	-4.11	0.77	0.87	3.09	3.3	0.008	0.85	0.0	0.04	16.08	0.01	2.199	4.47	0.11	7.2	92.7	0.1	-0.64	0.96	0.76	0.87	2.23	8245	1044	1	0	0	0	0	logfile
✔	6XMP	22260	2022-07-03	2020-06-30	3.5	4.29	3.63	4.0	0.005	0.54	0.0	0.04	13.08	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.003	0.53	0.0	0.04	14.38	0.00	2.153	6.73	0.11	3.3	96.7	0.0	1.03	0.35	0.71	0.85	1.45	8545	1086	1	0	12	0	0	logfile
✔	7ADM	11731	2022-07-03	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.10	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.018	1.28	1.0	0.04	16.62	0.00	2.082	11.00	0.37	9.3	90.7	0.0	-2.11	1.82	0.49	0.70	2.23	9726	614	1	0	0	0	4799	logfile
✔	7ADJ	11727	2022-07-03	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.71	0.0	0.04	17.21	0.00	2.143	6.49	2.39	6.5	93.5	0.0	-1.05	1.26	0.41	0.77	2.89	9710	613	1	0	0	0	4790	logfile
✔	6ZH4	11213	2022-07-06	2020-06-20	3.62	4.39	3.75	4.0	0.005	0.69	0.0	0.04	14.48	0.00	2.199	14.55	0.03	7.6	92.4	0.0	-0.76	0.89	0.87	1.88	4.0	0.003	0.64	0.0	0.04	15.79	0.00	2.141	11.28	0.22	5.9	94.1	0.0	0.53	0.37	0.88	0.86	1.47	29352	3670	1	0	28	0	0	logfile
✔	7AWA	11928	2022-07-03	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.53	0.0	0.04	14.89	0.00	2.160	6.39	0.00	2.8	97.2	0.0	-0.31	1.17	0.54	0.80	1.47	5310	328	1	0	0	0	2703	logfile
✔	6ZH2	11211	2022-07-06	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.77	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.003	0.68	0.0	0.04	15.89	0.00	2.189	13.57	0.09	6.0	93.9	0.0	0.27	1.50	0.87	0.86	1.08	29313	3676	1	0	28	0	0	logfile
✔	6YNV	10857	2022-07-03	2020-04-14	2.8	3.33	2.74	3.2	0.014	0.90	0.0	0.06	15.71	0.01	2.129	6.07	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.004	0.55	0.0	0.04	15.81	0.00	2.217	2.67	0.28	5.5	94.5	0.0	0.31	1.16	0.64	0.90	5.15	6724	417	1	0	1	0	3285	logfile
✔	7LQ6	23482	2022-07-03	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.003	0.64	0.0	0.04	16.28	0.01	2.138	7.18	0.00	3.6	96.4	0.0	0.12	1.01	0.91	0.87	1.78	5267	672	1	0	0	0	0	logfile
✔	6ZFP	11185	2022-07-06	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	11.16	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.003	0.62	0.0	0.04	15.66	0.00	2.198	8.40	0.19	6.3	93.7	0.1	0.32	0.77	0.80	0.78	1.32	29385	3676	1	0	28	0	0	logfile
✔	7B52	12017	2022-07-03	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.55	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.71	0.0	0.04	15.15	0.00	2.122	16.66	0.14	12.8	87.1	0.1	-1.32	0.92	0.82	0.83	0.66	13186	1638	1	0	0	0	0	logfile
✔	6XMQ	22261	2022-07-03	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.66	0.0	0.04	12.80	0.00	1.660	6.11	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.002	0.55	0.0	0.04	14.84	0.00	2.024	6.53	0.11	2.5	97.5	0.0	0.89	1.28	0.72	0.85	1.27	8362	1085	1	0	2	0	0	logfile
✔	6XMT	22263	2022-07-03	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.003	0.55	0.0	0.04	14.15	0.00	1.887	6.03	0.23	4.3	95.7	0.0	0.38	0.40	0.72	0.86	1.91	8324	1092	1	0	2	0	0	logfile
✔	7MPE	23932	2022-07-03	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.70	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.003	0.63	0.0	0.04	15.98	0.00	2.088	11.77	0.25	5.4	94.6	0.0	-0.64	1.11	0.62	0.77	1.29	11214	1428	1	0	0	0	0	logfile
✘	7oTW	13068	2022-07-06	2021-06-10	2.99	3.85	—	3.2	0.009	0.94	0.0	0.05	14.13	0.01	1.219	16.27	0.28	10.0	89.9	0.2	-2.30	0.80	0.71	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29038	3636	1	0	21	0	0	logfile

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