Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y6K	10706	2023-11-15	2020-02-26	3.78	3.86	—	3.8	0.012	0.99	1.0	0.06	16.00	0.01	1.889	11.41	2.36	12.5	87.4	0.2	-5.70	0.75	0.88	2.58	3.8	0.004	0.66	0.0	0.04	16.76	0.00	1.957	4.88	0.26	6.3	93.7	0.0	-2.50	1.01	0.76	0.86	2.12	10351	1299	1	0	1	0	0	logfile
✔	7VLR	32024	2023-11-14	2021-10-05	3.4	3.65	3.41	3.6	0.004	0.61	0.0	0.04	12.64	0.00	2.052	4.29	0.94	1.6	98.4	0.0	1.47	0.70	0.84	1.66	3.6	0.003	0.55	0.0	0.04	15.43	0.00	2.086	7.32	0.10	1.5	98.5	0.0	3.12	1.54	0.65	0.83	1.35	9003	1145	1	0	5	0	0	logfile
✘	7W01	32233	2023-11-15	2021-11-17	3.3	3.43	—	3.4	0.011	1.11	1.0	0.06	15.95	0.01	1.717	9.85	0.60	13.3	85.9	0.8	-4.55	0.68	0.86	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12724	1598	1	0	7	0	0	logfile
✔	7DV5	30870	2023-11-14	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✘	7RAV	24387	2023-11-13	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7PZR	13736	2023-11-16	2021-10-13	3.0	3.57	—	3.3	0.004	0.71	0.0	0.04	12.71	0.01	2.062	11.63	0.00	1.5	98.5	0.0	3.84	0.77	0.69	1.43	3.3	0.005	0.89	0.0	0.05	16.07	0.01	2.079	21.17	1.77	2.0	98.0	0.0	1.77	2.50	0.80	0.77	0.93	7404	935	1	0	0	0	0	logfile
✔	8HD6	34670	2023-11-14	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.73	0.0	0.04	18.64	0.01	1.772	23.51	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	7Y7Z	33675	2023-11-13	2022-06-22	3.2	3.57	3.17	3.5	0.009	1.04	0.0	0.05	15.30	0.01	2.037	11.20	0.00	7.2	92.8	0.0	-0.11	0.59	0.80	1.84	3.5	0.003	0.72	0.0	0.04	15.74	0.00	2.258	6.19	0.22	5.7	94.3	0.0	0.65	0.45	0.59	0.81	1.58	4303	532	1	0	5	0	0	logfile
✔	8A06	15051	2023-11-13	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	6KWX	0780	2023-11-16	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	13.00	0.01	1.627	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	17.29	0.00	2.112	16.75	0.31	7.3	92.7	0.1	-0.73	1.13	0.68	0.80	1.07	14227	1751	1	0	2	0	0	logfile
✔	8B0M	15788	2023-11-14	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	10.77	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.56	0.0	0.04	13.28	0.00	2.239	6.42	0.00	5.9	94.1	0.0	0.50	1.70	0.58	0.86	4.35	4015	508	1	0	1	0	0	logfile
✔	8ET9	28589	2023-11-14	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.003	0.58	0.0	0.03	14.29	0.00	1.959	10.28	0.26	3.7	96.3	0.0	0.86	4.56	0.47	0.68	2.12	7685	517	1	0	1	0	3796	logfile
✔	7Y7V	33671	2023-11-13	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.30	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.58	0.0	0.04	15.87	0.00	2.209	4.91	3.54	2.5	97.5	0.0	1.86	0.36	0.69	0.86	3.98	4341	532	1	0	4	58	0	logfile
✔	7FiJ	31599	2023-11-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	5M5H	4155	2023-11-13	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	8B0o	15790	2023-11-14	2022-09-07	3.02	3.35	3.12	3.3	0.009	0.70	0.0	0.04	12.96	0.02	2.255	6.96	0.00	6.0	94.0	0.0	-0.78	0.58	0.84	4.68	3.3	0.003	0.61	0.0	0.04	15.92	0.00	2.193	9.37	0.25	6.3	93.7	0.0	-0.51	0.90	0.57	0.85	3.74	3995	506	1	0	1	0	0	logfile
✘	7Y7W	33672	2023-11-13	2022-06-22	2.4	2.70	2.46	2.7	0.006	0.78	0.0	0.08	17.46	0.00	1.907	5.88	1.11	3.0	97.0	0.0	0.06	0.68	0.85	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4310	529	1	0	7	48	0	logfile
✔	8B0K	15786	2023-11-14	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.64	0.00	2.240	7.92	2.76	3.5	96.5	0.0	0.93	0.88	0.58	0.85	4.37	3830	492	1	0	0	0	0	logfile
✔	7VLS	32025	2023-11-14	2021-10-05	3.3	3.54	3.30	3.5	0.004	0.62	0.0	0.04	12.94	0.00	1.926	2.53	1.46	2.6	97.4	0.0	-0.24	0.69	0.84	2.33	3.5	0.003	0.58	0.0	0.04	15.83	0.00	1.966	6.39	0.00	1.6	98.4	0.0	2.51	1.51	0.64	0.82	1.72	9003	1141	1	0	6	0	0	logfile
✔	7VLU	32027	2023-11-14	2021-10-05	3.3	3.71	3.36	3.6	0.004	0.63	0.0	0.04	12.85	0.00	1.978	3.76	1.96	2.5	97.5	0.0	-0.35	0.71	0.84	2.31	3.6	0.003	0.58	0.0	0.04	14.68	0.00	1.962	6.31	0.10	1.6	98.4	0.0	2.48	1.91	0.61	0.79	1.51	9110	1159	1	0	6	0	0	logfile

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