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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Y6K | 10706 | 2023-11-15 | 2020-02-26 | 3.78 | 3.86 | — | 3.8 | 0.012 | 0.99 | 1.0 | 0.06 | 16.00 | 0.01 | 1.889 | 11.41 | 2.36 | 12.5 | 87.4 | 0.2 | -5.70 | 0.75 | 0.88 | 2.58 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 16.76 | 0.00 | 1.957 | 4.88 | 0.26 | 6.3 | 93.7 | 0.0 | -2.50 | 1.01 | 0.76 | 0.86 | 2.12 | 10351 | 1299 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VLR | 32024 | 2023-11-14 | 2021-10-05 | 3.4 | 3.65 | 3.41 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.64 | 0.00 | 2.052 | 4.29 | 0.94 | 1.6 | 98.4 | 0.0 | 1.47 | 0.70 | 0.84 | 1.66 | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.43 | 0.00 | 2.086 | 7.32 | 0.10 | 1.5 | 98.5 | 0.0 | 3.12 | 1.54 | 0.65 | 0.83 | 1.35 | 9003 | 1145 | 1 | 0 | 5 | 0 | 0 | logfile |
✘ | 7W01 | 32233 | 2023-11-15 | 2021-11-17 | 3.3 | 3.43 | — | 3.4 | 0.011 | 1.11 | 1.0 | 0.06 | 15.95 | 0.01 | 1.717 | 9.85 | 0.60 | 13.3 | 85.9 | 0.8 | -4.55 | 0.68 | 0.86 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12724 | 1598 | 1 | 0 | 7 | 0 | 0 | logfile |
✔ | 7DV5 | 30870 | 2023-11-14 | 2021-01-12 | 3.7 | 3.37 | — | 3.7 | 0.011 | 1.46 | 6.0 | 0.08 | 13.90 | 0.01 | 1.936 | 9.61 | 2.23 | 11.7 | 88.2 | 0.1 | -6.60 | 0.63 | 0.79 | 2.16 | 3.7 | 0.002 | 0.66 | 0.0 | 0.04 | 16.09 | 0.00 | 2.213 | 9.45 | 0.30 | 6.7 | 93.3 | 0.0 | -3.47 | 1.63 | 0.63 | 0.78 | 0.87 | 9319 | 1189 | 1 | 0 | 2 | 0 | 0 | logfile |
✘ | 7RAV | 24387 | 2023-11-13 | 2021-07-02 | 3.3 | 2.69 | 3.21 | 2.4 | 0.004 | 0.93 | 0.0 | 0.05 | 15.84 | 0.01 | 2.224 | 16.68 | 1.17 | 16.7 | 82.9 | 0.4 | -3.36 | 0.72 | 0.71 | 2.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6215 | 773 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7PZR | 13736 | 2023-11-16 | 2021-10-13 | 3.0 | 3.57 | — | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.71 | 0.01 | 2.062 | 11.63 | 0.00 | 1.5 | 98.5 | 0.0 | 3.84 | 0.77 | 0.69 | 1.43 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 16.07 | 0.01 | 2.079 | 21.17 | 1.77 | 2.0 | 98.0 | 0.0 | 1.77 | 2.50 | 0.80 | 0.77 | 0.93 | 7404 | 935 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HD6 | 34670 | 2023-11-14 | 2022-11-03 | 3.73 | 4.52 | 3.73 | 3.2 | 0.002 | 0.54 | 0.0 | 0.02 | 14.51 | 0.00 | 1.969 | 2.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.78 | — | 3.3 | 0.006 | 0.73 | 0.0 | 0.04 | 18.64 | 0.01 | 1.772 | 23.51 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.31 | 0.91 | 0.82 | — | 8980 | 0 | 1 | 419 | 25 | 0 | 0 | logfile |
✔ | 7Y7Z | 33675 | 2023-11-13 | 2022-06-22 | 3.2 | 3.57 | 3.17 | 3.5 | 0.009 | 1.04 | 0.0 | 0.05 | 15.30 | 0.01 | 2.037 | 11.20 | 0.00 | 7.2 | 92.8 | 0.0 | -0.11 | 0.59 | 0.80 | 1.84 | 3.5 | 0.003 | 0.72 | 0.0 | 0.04 | 15.74 | 0.00 | 2.258 | 6.19 | 0.22 | 5.7 | 94.3 | 0.0 | 0.65 | 0.45 | 0.59 | 0.81 | 1.58 | 4303 | 532 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2023-11-13 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KWX | 0780 | 2023-11-16 | 2019-09-09 | 3.75 | 4.07 | — | 4.0 | 0.011 | 1.55 | 1.0 | 0.17 | 13.00 | 0.01 | 1.627 | 13.84 | 1.69 | 9.0 | 90.6 | 0.3 | -4.69 | 0.68 | 0.72 | 1.40 | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 17.29 | 0.00 | 2.112 | 16.75 | 0.31 | 7.3 | 92.7 | 0.1 | -0.73 | 1.13 | 0.68 | 0.80 | 1.07 | 14227 | 1751 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8B0M | 15788 | 2023-11-14 | 2022-09-07 | 3.01 | 3.39 | 3.03 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 10.77 | 0.00 | 2.258 | 5.92 | 0.48 | 5.7 | 94.3 | 0.0 | -0.18 | 0.57 | 0.84 | 5.07 | 3.3 | 0.003 | 0.56 | 0.0 | 0.04 | 13.28 | 0.00 | 2.239 | 6.42 | 0.00 | 5.9 | 94.1 | 0.0 | 0.50 | 1.70 | 0.58 | 0.86 | 4.35 | 4015 | 508 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8ET9 | 28589 | 2023-11-14 | 2022-10-16 | 3.61 | 3.97 | 3.84 | 3.9 | 0.005 | 0.61 | 0.0 | 0.04 | 10.84 | 0.01 | 2.058 | 8.46 | 0.52 | 1.8 | 98.2 | 0.0 | 1.38 | 0.46 | 0.67 | 2.05 | 3.9 | 0.003 | 0.58 | 0.0 | 0.03 | 14.29 | 0.00 | 1.959 | 10.28 | 0.26 | 3.7 | 96.3 | 0.0 | 0.86 | 4.56 | 0.47 | 0.68 | 2.12 | 7685 | 517 | 1 | 0 | 1 | 0 | 3796 | logfile |
✔ | 7Y7V | 33671 | 2023-11-13 | 2022-06-22 | 2.2 | 2.46 | 2.24 | 2.4 | 0.005 | 0.73 | 0.0 | 0.07 | 16.30 | 0.00 | 2.078 | 5.73 | 1.11 | 3.2 | 96.8 | 0.0 | 0.09 | 0.71 | 0.86 | 4.53 | 2.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.87 | 0.00 | 2.209 | 4.91 | 3.54 | 2.5 | 97.5 | 0.0 | 1.86 | 0.36 | 0.69 | 0.86 | 3.98 | 4341 | 532 | 1 | 0 | 4 | 58 | 0 | logfile |
✔ | 7FiJ | 31599 | 2023-11-13 | 2021-07-31 | 3.8 | 2.32 | — | 1.8 | 0.001 | 0.41 | 0.0 | 0.04 | 8.02 | 0.00 | 2.344 | 3.95 | 0.00 | 4.1 | 95.9 | 0.0 | 1.10 | 0.58 | 0.50 | 3.05 | 1.6 | 0.003 | 0.71 | 0.0 | 0.04 | 10.87 | 0.00 | 2.234 | 8.95 | 1.25 | 10.6 | 89.4 | 0.0 | -0.78 | 0.63 | 0.60 | 0.54 | 2.95 | 3061 | 561 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5M5H | 4155 | 2023-11-13 | 2016-10-21 | 4.5 | 2.29 | — | 2.2 | 0.007 | 1.50 | 0.0 | 0.08 | 12.37 | 0.01 | 2.186 | 39.89 | 0.00 | 8.7 | 88.9 | 2.4 | -5.94 | 0.14 | 0.14 | — | 2.1 | 0.004 | 0.89 | 0.0 | 0.05 | 12.67 | 0.01 | 2.275 | 23.84 | 0.00 | 8.7 | 91.3 | 0.0 | -1.45 | 2.20 | 0.15 | 0.14 | — | 1086 | 132 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B0o | 15790 | 2023-11-14 | 2022-09-07 | 3.02 | 3.35 | 3.12 | 3.3 | 0.009 | 0.70 | 0.0 | 0.04 | 12.96 | 0.02 | 2.255 | 6.96 | 0.00 | 6.0 | 94.0 | 0.0 | -0.78 | 0.58 | 0.84 | 4.68 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 15.92 | 0.00 | 2.193 | 9.37 | 0.25 | 6.3 | 93.7 | 0.0 | -0.51 | 0.90 | 0.57 | 0.85 | 3.74 | 3995 | 506 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 7Y7W | 33672 | 2023-11-13 | 2022-06-22 | 2.4 | 2.70 | 2.46 | 2.7 | 0.006 | 0.78 | 0.0 | 0.08 | 17.46 | 0.00 | 1.907 | 5.88 | 1.11 | 3.0 | 97.0 | 0.0 | 0.06 | 0.68 | 0.85 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4310 | 529 | 1 | 0 | 7 | 48 | 0 | logfile |
✔ | 8B0K | 15786 | 2023-11-14 | 2022-09-07 | 3.0 | 3.23 | 3.08 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 9.63 | 0.00 | 2.276 | 7.40 | 0.50 | 3.1 | 96.9 | 0.0 | 0.56 | 0.57 | 0.83 | 5.07 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 13.64 | 0.00 | 2.240 | 7.92 | 2.76 | 3.5 | 96.5 | 0.0 | 0.93 | 0.88 | 0.58 | 0.85 | 4.37 | 3830 | 492 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VLS | 32025 | 2023-11-14 | 2021-10-05 | 3.3 | 3.54 | 3.30 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 12.94 | 0.00 | 1.926 | 2.53 | 1.46 | 2.6 | 97.4 | 0.0 | -0.24 | 0.69 | 0.84 | 2.33 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 15.83 | 0.00 | 1.966 | 6.39 | 0.00 | 1.6 | 98.4 | 0.0 | 2.51 | 1.51 | 0.64 | 0.82 | 1.72 | 9003 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7VLU | 32027 | 2023-11-14 | 2021-10-05 | 3.3 | 3.71 | 3.36 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 12.85 | 0.00 | 1.978 | 3.76 | 1.96 | 2.5 | 97.5 | 0.0 | -0.35 | 0.71 | 0.84 | 2.31 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.68 | 0.00 | 1.962 | 6.31 | 0.10 | 1.6 | 98.4 | 0.0 | 2.48 | 1.91 | 0.61 | 0.79 | 1.51 | 9110 | 1159 | 1 | 0 | 6 | 0 | 0 | logfile |