Table showing results for February 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KPW	22990	2023-02-17	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7SYF	25524	2023-02-20	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.78	0.0	0.04	13.94	0.00	1.993	16.84	0.08	3.1	96.9	0.0	0.80	1.17	0.68	0.63	—	11108	1391	1	0	0	0	0	logfile
✔	6XJB	22205	2023-02-19	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.64	0.0	0.04	15.19	0.00	2.043	13.87	0.19	7.8	92.2	0.0	-1.33	1.82	0.88	0.85	2.02	10070	1277	1	0	0	0	0	logfile
✔	7PD4	13330	2023-02-18	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	6UES	20755	2023-02-17	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.14	0.01	1.785	36.43	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	7YiM	33861	2023-02-17	2022-07-17	2.6	2.93	2.77	2.9	0.013	1.14	0.0	0.07	15.89	0.01	2.272	6.72	0.78	4.9	95.1	0.0	-4.17	0.67	0.68	1.25	2.9	0.003	0.64	0.0	0.04	17.74	0.00	2.221	10.52	2.52	3.4	96.6	0.0	0.68	1.25	0.64	0.66	1.25	4657	592	1	0	0	0	0	logfile
✔	7ZH0	14716	2023-02-17	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.02	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.68	0.0	0.04	16.34	0.00	2.220	13.89	0.73	5.5	94.3	0.2	1.04	0.51	0.67	0.77	2.84	3869	495	1	0	0	0	0	logfile
✔	5oJS	3824	2023-02-26	2017-07-24	3.7	3.84	—	3.7	0.007	1.43	0.0	0.07	13.41	0.01	2.211	8.27	2.09	14.8	84.6	0.6	-5.58	0.80	0.75	1.62	3.7	0.004	0.90	0.0	0.05	16.07	0.01	2.137	16.50	0.28	13.6	86.3	0.1	-1.91	0.78	0.81	0.75	0.89	28407	3473	1	0	0	0	0	logfile
✔	7K11	22620	2023-02-19	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.62	0.0	0.04	16.63	0.00	2.259	7.50	0.37	9.4	90.6	0.0	-0.83	1.23	0.70	0.78	1.30	10011	1254	1	0	0	0	0	logfile
✘	7K10	22619	2023-02-19	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1259	1	0	0	0	0	logfile
✔	6V6C	21068	2023-02-17	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	6HYD	0308	2023-02-20	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.66	0.0	0.04	14.61	0.00	2.180	5.80	0.40	5.3	94.6	0.1	-1.15	1.75	0.76	0.79	1.50	12168	1543	1	0	31	0	0	logfile
✔	7W84	32351	2023-02-21	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.004	0.88	0.0	0.05	17.57	0.00	2.037	21.31	1.17	12.3	87.7	0.0	-2.02	0.86	0.80	0.79	1.37	7879	995	1	0	0	0	0	logfile
✔	7NUR	12600	2023-02-18	2021-03-13	3.125	3.29	—	3.3	0.007	0.77	0.0	0.05	14.31	0.01	2.174	5.26	0.11	7.7	92.0	0.3	-4.11	0.77	0.87	3.09	3.3	0.006	0.70	0.0	0.04	15.99	0.01	2.238	4.05	0.34	7.3	92.6	0.1	-0.76	0.96	0.76	0.88	2.37	8245	1044	1	0	0	0	0	logfile
✔	7BWM	30233	2023-02-22	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.32	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.003	0.62	0.0	0.04	15.51	0.00	2.140	6.52	1.75	5.6	94.4	0.0	-1.07	1.12	0.79	0.87	3.54	9532	1219	1	0	0	0	0	logfile
✔	7VH3	31985	2023-02-20	2021-09-20	3.6	3.70	—	3.7	0.005	1.09	0.0	0.06	11.49	0.01	2.257	7.95	0.90	8.5	91.0	0.4	-4.84	0.68	0.69	1.85	3.6	0.003	0.72	0.0	0.04	15.45	0.00	2.153	13.94	0.21	8.1	91.8	0.1	-1.28	1.66	0.70	0.73	1.52	12749	1612	1	0	0	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	6iG9	9664	2023-02-22	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	7ADM	11731	2023-02-19	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.004	0.66	0.0	0.04	16.44	0.00	2.068	10.08	0.18	11.4	88.6	0.0	-1.79	0.91	0.49	0.71	2.27	9726	614	1	0	0	0	4799	logfile
✔	6i26	0328	2023-02-24	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.002	0.67	0.0	0.04	10.47	0.00	2.212	4.82	0.00	5.8	94.2	0.0	0.06	0.96	0.83	0.76	—	22765	3366	1	0	221	0	0	logfile

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