Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2021-01-05	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	3.9	0.002	0.65	0.0	0.04	13.80	0.00	2.258	8.06	0.00	6.2	92.5	1.2	-0.48	3.22	0.23	0.67	1.29	1364	82	1	0	0	0	711	logfile
✔	6LR0	0956	2021-01-05	2020-01-15	3.5	2.83	—	3.5	0.009	1.28	0.0	0.07	13.02	0.01	2.228	5.41	1.27	11.1	88.8	0.1	-6.63	0.49	0.72	1.90	3.5	0.003	0.70	0.0	0.04	14.40	0.01	2.217	7.54	0.10	6.7	93.3	0.0	-3.28	1.43	0.48	0.70	1.34	9587	1232	1	0	0	0	0	logfile
✔	6BHU	7099	2021-01-05	2017-10-31	3.14	3.58	3.62	3.7	0.010	1.29	0.0	0.35	13.19	0.00	1.915	0.69	0.00	3.7	96.3	0.0	-1.76	0.48	0.69	2.60	3.7	0.003	1.02	0.0	0.10	14.19	0.00	1.981	5.51	0.00	2.2	97.8	0.0	1.57	0.74	0.60	0.84	1.93	10273	1208	1	0	127	0	0	logfile
✔	6D3R	7793	2021-01-05	2018-04-16	4.3	4.80	4.40	4.5	0.017	1.75	0.0	0.10	9.07	0.01	2.385	0.21	0.00	1.5	98.5	0.0	0.66	0.66	0.76	—	4.6	0.002	0.63	0.0	0.04	11.89	0.00	2.269	7.00	0.00	2.6	97.4	0.0	2.28	1.24	0.68	0.77	—	7610	1127	1	0	2	0	0	logfile
✔	5M6S	3451	2021-01-05	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.60	0.0	0.03	16.25	0.00	2.016	10.05	0.00	5.2	94.8	0.0	3.46	2.63	0.02	-0.08	—	1593	98	1	0	0	0	793	logfile
✔	6C0V	7325	2021-01-05	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.59	0.0	0.04	14.29	0.00	2.002	6.31	0.00	2.3	97.7	0.0	1.36	2.09	0.58	0.85	2.28	8976	1154	1	0	4	0	0	logfile
✘	5A7U	3079	2021-01-05	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	28.57	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5W81	8782	2021-01-05	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.63	0.0	0.04	14.67	0.00	1.960	7.05	0.00	3.4	96.6	0.1	0.45	2.95	0.58	0.81	1.96	9393	1173	1	0	4	0	0	logfile
✔	3JBS	6478	2021-01-05	2015-10-13	2.9	3.04	—	3.2	0.010	1.35	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.002	0.58	0.0	0.04	11.45	0.00	2.353	4.14	0.00	2.3	97.7	0.0	0.55	2.91	0.21	0.79	3.78	1401	175	1	0	0	0	0	logfile
✔	6UM1	20815	2021-01-06	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.16	0.01	2.014	9.59	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.005	0.79	0.0	0.05	13.98	0.01	2.126	16.49	0.00	11.5	88.5	0.1	-3.02	0.65	0.69	0.70	2.44	17134	2208	1	0	8	0	0	logfile
✔	5X1G	6701	2021-01-05	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	0.002	0.62	0.0	0.03	3.04	0.00	2.649	0.00	0.00	0.0	100.0	0.0	4.51	3.37	0.01	0.14	—	155	31	1	0	0	0	0	logfile
✔	6KZP	0792	2021-01-05	2019-09-25	3.1	2.67	—	3.0	0.023	1.42	1.0	0.34	14.61	0.01	2.390	10.16	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.70	0.0	0.13	15.30	0.00	2.239	9.60	0.00	2.9	97.0	0.1	1.29	0.71	0.59	0.81	2.94	8557	1014	1	0	18	0	0	logfile
✔	6UoX	20834	2021-01-05	2019-10-15	4.02	4.28	—	4.1	0.010	1.18	1.0	0.08	11.79	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	4.1	0.003	0.67	0.0	0.04	12.79	0.00	2.187	7.31	0.00	5.5	94.5	0.0	-1.46	0.97	0.68	0.80	—	9138	1161	1	0	14	0	0	logfile
✔	6S7P	10111	2021-01-05	2019-07-05	3.2	3.38	—	3.4	0.015	1.28	0.0	0.61	13.12	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.004	1.57	0.0	0.18	15.38	0.00	2.014	7.31	0.00	2.2	97.8	0.0	0.79	0.55	0.65	0.83	3.03	9028	1128	1	0	11	0	0	logfile
✔	6oR5	9032	2021-01-05	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.58	0.0	0.04	9.07	0.00	2.142	4.78	0.00	14.9	85.1	0.0	-1.17	1.35	0.76	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	5UAR	8461	2021-01-05	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.70	0.0	0.04	13.42	0.01	2.117	8.40	0.00	4.3	95.7	0.0	0.13	1.55	0.61	0.80	1.21	9489	1184	1	0	2	0	0	logfile
✔	5UJ9	8559	2021-01-05	2017-01-17	3.49	3.63	3.85	3.6	0.008	1.14	0.0	0.06	12.10	0.00	2.364	0.67	0.00	4.3	95.7	0.0	-2.72	0.50	0.68	2.42	3.6	0.003	0.63	0.0	0.04	13.79	0.00	2.077	9.82	0.00	3.4	96.5	0.1	1.14	1.64	0.56	0.71	1.91	9857	1170	1	0	125	0	0	logfile
✔	5UJA	8560	2021-01-05	2017-01-17	3.34	3.41	3.88	3.4	0.008	1.17	1.0	0.06	13.42	0.00	2.321	0.87	0.00	4.0	96.0	0.0	-3.39	0.49	0.66	2.49	3.3	0.004	0.68	0.0	0.04	14.25	0.00	2.149	11.11	0.10	4.2	95.7	0.1	0.07	1.03	0.57	0.75	1.60	9900	1170	1	0	126	0	0	logfile
✔	6LN8	0927	2021-01-05	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.53	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.002	0.52	0.0	0.04	13.51	0.00	2.031	8.28	0.00	2.7	97.3	0.0	0.36	0.46	0.68	0.79	2.06	7739	1003	1	0	2	0	0	logfile
✔	6KLD	0707	2021-01-05	2019-07-30	3.58	3.65	—	3.6	0.004	0.77	1.0	0.05	14.10	0.00	1.906	11.00	0.86	10.8	88.8	0.4	-3.64	0.72	0.81	1.60	3.6	0.003	0.71	0.0	0.04	13.82	0.00	1.876	8.83	0.00	10.1	89.9	0.1	-0.83	1.46	0.74	0.81	1.84	12466	1587	1	0	2	0	0	logfile

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