Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WYK	21967	2021-05-03	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.65	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.88	0.0	0.05	16.75	0.01	2.184	10.99	0.61	3.2	96.8	0.0	1.92	0.92	0.61	0.77	—	3083	415	1	0	0	0	0	logfile
✔	7KTW	23032	2021-05-03	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.84	0.0	0.04	13.49	0.00	2.139	20.86	0.12	3.4	96.6	0.0	0.65	1.07	0.80	0.79	—	7577	995	1	0	0	0	0	logfile
✔	6WU0	21901	2021-05-03	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.49	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.005	0.84	0.0	0.04	16.26	0.01	2.160	13.11	0.46	7.4	92.6	0.0	-0.19	0.56	0.54	0.63	0.44	6340	854	1	0	0	0	0	logfile
✔	7LCK	23276	2021-05-03	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.57	4.0	0.24	16.48	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.75	0.0	0.04	16.13	0.00	2.301	4.68	0.00	4.1	95.9	0.0	0.83	1.10	0.66	0.79	2.10	3258	390	1	0	1	11	0	logfile
✔	6TAY	10430	2021-05-06	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.61	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	2.9	0.003	0.62	0.0	0.04	14.03	0.00	2.061	8.59	0.21	7.1	92.9	0.0	0.57	1.58	0.86	0.82	2.38	35241	4350	1	0	71	0	0	logfile
✔	7KTV	23031	2021-05-03	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.81	0.0	0.05	13.15	0.01	2.061	20.34	0.25	4.6	95.4	0.0	-0.63	0.99	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7K11	22620	2021-05-03	2020-09-06	3.21	3.34	—	3.3	0.005	0.93	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.004	0.68	0.0	0.04	16.60	0.01	2.238	7.50	0.09	9.5	90.5	0.0	-1.02	1.24	0.69	0.76	1.48	10011	1254	1	0	0	0	0	logfile
✔	6YJ5	10816	2021-05-03	2020-04-02	3.5	2.92	3.57	3.3	0.007	0.89	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.004	0.71	0.0	0.05	15.95	0.01	2.328	9.77	0.00	9.5	90.5	0.0	-1.44	0.83	0.49	0.72	2.92	2061	306	1	0	0	0	0	logfile
✔	7JGD	22323	2021-05-04	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.41	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.004	0.55	0.0	0.06	15.00	0.00	2.019	15.16	0.08	7.5	92.5	0.0	0.32	0.58	0.64	0.71	1.63	20292	1435	1	0	0	0	8505	logfile
✔	7JGF	22325	2021-05-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.47	—	4477	532	1	0	0	0	30	logfile
✔	7BWM	30233	2021-05-04	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.21	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.003	0.60	0.0	0.04	15.57	0.00	2.139	6.46	2.05	4.9	95.1	0.1	-0.64	0.91	0.77	0.85	3.46	9532	1219	1	0	0	0	0	logfile
✔	6UY0	20945	2021-05-03	2019-11-09	3.23	3.39	—	3.4	0.030	1.87	0.0	0.16	13.94	0.00	1.861	1.07	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.60	0.0	0.04	15.89	0.00	2.042	6.38	0.19	2.2	97.8	0.0	1.77	1.55	0.56	0.77	1.47	9684	1210	1	0	7	0	0	logfile
✔	6TAX	10429	2021-05-06	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.47	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.80	0.00	2.088	9.58	0.13	7.3	92.7	0.0	0.07	1.92	0.88	0.80	1.95	35235	4349	1	0	71	0	0	logfile
✔	7KTU	23030	2021-05-03	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.84	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.3	0.003	0.79	0.0	0.04	13.47	0.00	2.146	16.62	0.00	2.7	97.3	0.0	0.77	1.33	0.80	0.75	—	7577	995	1	0	0	0	0	logfile
✔	6ZPG	11338	2021-05-03	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.86	0.0	0.04	15.11	0.00	2.205	20.99	0.00	6.1	93.9	0.0	0.14	2.19	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6WYJ	21966	2021-05-03	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.58	0.0	0.04	14.64	0.00	2.306	4.76	0.64	1.5	98.5	0.0	2.31	1.19	0.62	0.80	1.59	2949	398	1	0	0	0	0	logfile
✔	6L53	0836	2021-05-04	2019-10-22	3.63	3.79	—	3.7	0.002	0.70	0.0	0.04	9.71	0.00	2.193	8.52	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	3.7	0.004	0.96	0.0	0.05	14.91	0.01	2.148	13.91	0.36	11.8	88.1	0.1	-2.54	1.39	0.80	0.74	0.77	13991	1935	1	0	0	0	0	logfile
✔	6RJU	4906	2021-05-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.09	-2.78	1992	131	1	0	0	0	997	logfile
✔	6X12	21986	2021-05-03	2020-05-18	3.52	3.69	—	3.7	0.007	1.08	0.0	0.06	16.04	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.004	0.68	0.0	0.04	16.07	0.00	2.228	9.03	0.95	2.7	97.3	0.0	0.06	1.17	0.65	0.84	1.59	3059	407	1	0	1	0	0	logfile
✔	6YV1	10940	2021-05-03	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.65	0.0	0.04	14.47	0.00	2.301	7.63	0.37	1.9	98.1	0.0	1.28	0.63	0.51	0.85	1.38	2496	328	1	0	0	0	0	logfile

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