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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FU8 | 4319 | 2021-01-05 | 2018-02-26 | 3.2 | 4.42 | 2.98 | 3.8 | 0.013 | 2.11 | 2.0 | 0.10 | 20.18 | 0.02 | 2.617 | 1.47 | 2.78 | 11.2 | 86.2 | 2.5 | -3.87 | 0.17 | 0.42 | 2.23 | 3.9 | 0.002 | 0.65 | 0.0 | 0.04 | 13.80 | 0.00 | 2.258 | 8.06 | 0.00 | 6.2 | 92.5 | 1.2 | -0.48 | 3.22 | 0.23 | 0.67 | 1.29 | 1364 | 82 | 1 | 0 | 0 | 0 | 711 | logfile |
✔ | 6LR0 | 0956 | 2021-01-05 | 2020-01-15 | 3.5 | 2.83 | — | 3.5 | 0.009 | 1.28 | 0.0 | 0.07 | 13.02 | 0.01 | 2.228 | 5.41 | 1.27 | 11.1 | 88.8 | 0.1 | -6.63 | 0.49 | 0.72 | 1.90 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 14.40 | 0.01 | 2.217 | 7.54 | 0.10 | 6.7 | 93.3 | 0.0 | -3.28 | 1.43 | 0.48 | 0.70 | 1.34 | 9587 | 1232 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BHU | 7099 | 2021-01-05 | 2017-10-31 | 3.14 | 3.58 | 3.62 | 3.7 | 0.010 | 1.29 | 0.0 | 0.35 | 13.19 | 0.00 | 1.915 | 0.69 | 0.00 | 3.7 | 96.3 | 0.0 | -1.76 | 0.48 | 0.69 | 2.60 | 3.7 | 0.003 | 1.02 | 0.0 | 0.10 | 14.19 | 0.00 | 1.981 | 5.51 | 0.00 | 2.2 | 97.8 | 0.0 | 1.57 | 0.74 | 0.60 | 0.84 | 1.93 | 10273 | 1208 | 1 | 0 | 127 | 0 | 0 | logfile |
✔ | 6D3R | 7793 | 2021-01-05 | 2018-04-16 | 4.3 | 4.80 | 4.40 | 4.5 | 0.017 | 1.75 | 0.0 | 0.10 | 9.07 | 0.01 | 2.385 | 0.21 | 0.00 | 1.5 | 98.5 | 0.0 | 0.66 | 0.66 | 0.76 | — | 4.6 | 0.002 | 0.63 | 0.0 | 0.04 | 11.89 | 0.00 | 2.269 | 7.00 | 0.00 | 2.6 | 97.4 | 0.0 | 2.28 | 1.24 | 0.68 | 0.77 | — | 7610 | 1127 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5M6S | 3451 | 2021-01-05 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 20.10 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.4 | 0.003 | 0.60 | 0.0 | 0.03 | 16.25 | 0.00 | 2.016 | 10.05 | 0.00 | 5.2 | 94.8 | 0.0 | 3.46 | 2.63 | 0.02 | -0.08 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 6C0V | 7325 | 2021-01-05 | 2018-01-02 | 3.4 | 3.67 | — | 3.9 | 0.008 | 1.14 | 0.0 | 0.06 | 12.84 | 0.00 | 1.961 | 0.33 | 0.00 | 4.3 | 95.7 | 0.0 | -2.20 | 0.42 | 0.67 | 2.82 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.29 | 0.00 | 2.002 | 6.31 | 0.00 | 2.3 | 97.7 | 0.0 | 1.36 | 2.09 | 0.58 | 0.85 | 2.28 | 8976 | 1154 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2021-01-05 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 28.57 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5W81 | 8782 | 2021-01-05 | 2017-06-21 | 3.37 | 3.79 | — | 3.9 | 0.008 | 1.26 | 1.0 | 0.06 | 13.30 | 0.00 | 1.940 | 1.47 | 0.00 | 5.1 | 94.9 | 0.0 | -3.11 | 0.45 | 0.60 | 0.57 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.67 | 0.00 | 1.960 | 7.05 | 0.00 | 3.4 | 96.6 | 0.1 | 0.45 | 2.95 | 0.58 | 0.81 | 1.96 | 9393 | 1173 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2021-01-05 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.35 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.002 | 0.58 | 0.0 | 0.04 | 11.45 | 0.00 | 2.353 | 4.14 | 0.00 | 2.3 | 97.7 | 0.0 | 0.55 | 2.91 | 0.21 | 0.79 | 3.78 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UM1 | 20815 | 2021-01-06 | 2019-10-08 | 3.46 | 3.57 | — | 3.5 | 0.014 | 1.83 | 7.0 | 0.09 | 15.16 | 0.01 | 2.014 | 9.59 | 0.84 | 6.9 | 92.9 | 0.2 | -4.82 | 0.69 | 0.70 | 2.32 | 3.5 | 0.005 | 0.79 | 0.0 | 0.05 | 13.98 | 0.01 | 2.126 | 16.49 | 0.00 | 11.5 | 88.5 | 0.1 | -3.02 | 0.65 | 0.69 | 0.70 | 2.44 | 17134 | 2208 | 1 | 0 | 8 | 0 | 0 | logfile |
✔ | 5X1G | 6701 | 2021-01-05 | 2017-01-25 | 4.5 | 7.89 | — | 37.0 | 0.008 | 1.42 | 0.0 | 0.05 | 10.05 | 0.01 | 2.345 | 27.78 | 0.00 | 6.9 | 93.1 | 0.0 | -2.75 | 0.00 | 0.01 | — | — | 0.002 | 0.62 | 0.0 | 0.03 | 3.04 | 0.00 | 2.649 | 0.00 | 0.00 | 0.0 | 100.0 | 0.0 | 4.51 | 3.37 | 0.01 | 0.14 | — | 155 | 31 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KZP | 0792 | 2021-01-05 | 2019-09-25 | 3.1 | 2.67 | — | 3.0 | 0.023 | 1.42 | 1.0 | 0.34 | 14.61 | 0.01 | 2.390 | 10.16 | 2.44 | 3.3 | 96.4 | 0.3 | -4.53 | 0.59 | 0.81 | 3.72 | 3.1 | 0.003 | 0.70 | 0.0 | 0.13 | 15.30 | 0.00 | 2.239 | 9.60 | 0.00 | 2.9 | 97.0 | 0.1 | 1.29 | 0.71 | 0.59 | 0.81 | 2.94 | 8557 | 1014 | 1 | 0 | 18 | 0 | 0 | logfile |
✔ | 6UoX | 20834 | 2021-01-05 | 2019-10-15 | 4.02 | 4.28 | — | 4.1 | 0.010 | 1.18 | 1.0 | 0.08 | 11.79 | 0.01 | 2.461 | 0.89 | 0.00 | 8.2 | 91.8 | 0.0 | -4.01 | 0.66 | 0.78 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 12.79 | 0.00 | 2.187 | 7.31 | 0.00 | 5.5 | 94.5 | 0.0 | -1.46 | 0.97 | 0.68 | 0.80 | — | 9138 | 1161 | 1 | 0 | 14 | 0 | 0 | logfile |
✔ | 6S7P | 10111 | 2021-01-05 | 2019-07-05 | 3.2 | 3.38 | — | 3.4 | 0.015 | 1.28 | 0.0 | 0.61 | 13.12 | 0.01 | 2.085 | 3.44 | 0.33 | 2.8 | 97.2 | 0.0 | -3.03 | 0.65 | 0.83 | 4.30 | 3.4 | 0.004 | 1.57 | 0.0 | 0.18 | 15.38 | 0.00 | 2.014 | 7.31 | 0.00 | 2.2 | 97.8 | 0.0 | 0.79 | 0.55 | 0.65 | 0.83 | 3.03 | 9028 | 1128 | 1 | 0 | 11 | 0 | 0 | logfile |
✔ | 6oR5 | 9032 | 2021-01-05 | 2019-04-29 | 4.0 | 4.23 | — | 3.9 | 0.006 | 0.93 | 0.0 | 0.05 | 11.50 | 0.00 | 2.245 | 4.84 | 0.00 | 17.3 | 82.4 | 0.3 | -5.53 | 0.76 | 0.79 | — | 3.9 | 0.002 | 0.58 | 0.0 | 0.04 | 9.07 | 0.00 | 2.142 | 4.78 | 0.00 | 14.9 | 85.1 | 0.0 | -1.17 | 1.35 | 0.76 | 0.79 | — | 10364 | 2058 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 5UAR | 8461 | 2021-01-05 | 2016-12-19 | 3.73 | 4.36 | — | 4.4 | 0.008 | 1.18 | 0.0 | 0.06 | 13.30 | 0.00 | 2.393 | 0.26 | 1.06 | 7.4 | 92.5 | 0.1 | -3.58 | 0.58 | 0.77 | 1.39 | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 13.42 | 0.01 | 2.117 | 8.40 | 0.00 | 4.3 | 95.7 | 0.0 | 0.13 | 1.55 | 0.61 | 0.80 | 1.21 | 9489 | 1184 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 5UJ9 | 8559 | 2021-01-05 | 2017-01-17 | 3.49 | 3.63 | 3.85 | 3.6 | 0.008 | 1.14 | 0.0 | 0.06 | 12.10 | 0.00 | 2.364 | 0.67 | 0.00 | 4.3 | 95.7 | 0.0 | -2.72 | 0.50 | 0.68 | 2.42 | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 13.79 | 0.00 | 2.077 | 9.82 | 0.00 | 3.4 | 96.5 | 0.1 | 1.14 | 1.64 | 0.56 | 0.71 | 1.91 | 9857 | 1170 | 1 | 0 | 125 | 0 | 0 | logfile |
✔ | 5UJA | 8560 | 2021-01-05 | 2017-01-17 | 3.34 | 3.41 | 3.88 | 3.4 | 0.008 | 1.17 | 1.0 | 0.06 | 13.42 | 0.00 | 2.321 | 0.87 | 0.00 | 4.0 | 96.0 | 0.0 | -3.39 | 0.49 | 0.66 | 2.49 | 3.3 | 0.004 | 0.68 | 0.0 | 0.04 | 14.25 | 0.00 | 2.149 | 11.11 | 0.10 | 4.2 | 95.7 | 0.1 | 0.07 | 1.03 | 0.57 | 0.75 | 1.60 | 9900 | 1170 | 1 | 0 | 126 | 0 | 0 | logfile |
✔ | 6LN8 | 0927 | 2021-01-05 | 2019-12-28 | 3.1 | 3.26 | 3.33 | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 12.81 | 0.00 | 2.051 | 6.74 | 0.00 | 3.0 | 97.0 | 0.0 | -2.71 | 0.70 | 0.80 | 2.37 | 3.3 | 0.002 | 0.52 | 0.0 | 0.04 | 13.51 | 0.00 | 2.031 | 8.28 | 0.00 | 2.7 | 97.3 | 0.0 | 0.36 | 0.46 | 0.68 | 0.79 | 2.06 | 7739 | 1003 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KLD | 0707 | 2021-01-05 | 2019-07-30 | 3.58 | 3.65 | — | 3.6 | 0.004 | 0.77 | 1.0 | 0.05 | 14.10 | 0.00 | 1.906 | 11.00 | 0.86 | 10.8 | 88.8 | 0.4 | -3.64 | 0.72 | 0.81 | 1.60 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 13.82 | 0.00 | 1.876 | 8.83 | 0.00 | 10.1 | 89.9 | 0.1 | -0.83 | 1.46 | 0.74 | 0.81 | 1.84 | 12466 | 1587 | 1 | 0 | 2 | 0 | 0 | logfile |