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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KPW | 22990 | 2023-02-17 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SYF | 25524 | 2023-02-20 | 2021-11-24 | 4.2 | 3.03 | 3.92 | 2.2 | 0.013 | 1.86 | 8.0 | 0.10 | 14.32 | 0.01 | 2.460 | 1.62 | 1.31 | 3.9 | 96.1 | 0.0 | -1.56 | 0.67 | 0.61 | — | 2.2 | 0.003 | 0.78 | 0.0 | 0.04 | 13.94 | 0.00 | 1.993 | 16.84 | 0.08 | 3.1 | 96.9 | 0.0 | 0.80 | 1.17 | 0.68 | 0.63 | — | 11108 | 1391 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XJB | 22205 | 2023-02-19 | 2020-06-23 | 3.8 | 4.06 | — | 3.9 | 0.002 | 0.56 | 0.0 | 0.04 | 13.11 | 0.00 | 2.165 | 9.70 | 0.00 | 8.6 | 91.4 | 0.0 | -3.06 | 0.88 | 0.82 | 1.76 | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 15.19 | 0.00 | 2.043 | 13.87 | 0.19 | 7.8 | 92.2 | 0.0 | -1.33 | 1.82 | 0.88 | 0.85 | 2.02 | 10070 | 1277 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PD4 | 13330 | 2023-02-18 | 2021-08-04 | 4.9 | 4.13 | — | 7.8 | 0.005 | 0.87 | 0.0 | 0.05 | 14.59 | 0.00 | 2.035 | 38.59 | 0.00 | 11.7 | 88.3 | 0.0 | -4.80 | 0.73 | 0.72 | — | 7.8 | 0.003 | 0.78 | 0.0 | 0.04 | 13.56 | 0.00 | 2.126 | 18.85 | 0.00 | 5.8 | 94.2 | 0.0 | -0.39 | 1.28 | 0.73 | 0.73 | — | 6676 | 842 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UES | 20755 | 2023-02-17 | 2019-09-23 | 3.7 | 3.94 | — | 3.2 | 0.002 | 0.48 | 0.0 | 0.02 | 17.15 | 0.00 | 2.100 | 7.29 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.76 | — | 3.3 | 0.007 | 0.87 | 0.0 | 0.04 | 21.14 | 0.01 | 1.785 | 36.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.34 | 0.88 | 0.83 | — | 3842 | 0 | 1 | 119 | 0 | 0 | 1291 | logfile |
✔ | 7YiM | 33861 | 2023-02-17 | 2022-07-17 | 2.6 | 2.93 | 2.77 | 2.9 | 0.013 | 1.14 | 0.0 | 0.07 | 15.89 | 0.01 | 2.272 | 6.72 | 0.78 | 4.9 | 95.1 | 0.0 | -4.17 | 0.67 | 0.68 | 1.25 | 2.9 | 0.003 | 0.64 | 0.0 | 0.04 | 17.74 | 0.00 | 2.221 | 10.52 | 2.52 | 3.4 | 96.6 | 0.0 | 0.68 | 1.25 | 0.64 | 0.66 | 1.25 | 4657 | 592 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZH0 | 14716 | 2023-02-17 | 2022-04-05 | 3.2 | 3.63 | 3.07 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 13.97 | 0.01 | 2.191 | 14.02 | 0.24 | 6.0 | 94.0 | 0.0 | 1.08 | 0.65 | 0.75 | 3.58 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 16.34 | 0.00 | 2.220 | 13.89 | 0.73 | 5.5 | 94.3 | 0.2 | 1.04 | 0.51 | 0.67 | 0.77 | 2.84 | 3869 | 495 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oJS | 3824 | 2023-02-26 | 2017-07-24 | 3.7 | 3.84 | — | 3.7 | 0.007 | 1.43 | 0.0 | 0.07 | 13.41 | 0.01 | 2.211 | 8.27 | 2.09 | 14.8 | 84.6 | 0.6 | -5.58 | 0.80 | 0.75 | 1.62 | 3.7 | 0.004 | 0.90 | 0.0 | 0.05 | 16.07 | 0.01 | 2.137 | 16.50 | 0.28 | 13.6 | 86.3 | 0.1 | -1.91 | 0.78 | 0.81 | 0.75 | 0.89 | 28407 | 3473 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K11 | 22620 | 2023-02-19 | 2020-09-06 | 3.21 | 3.34 | — | 3.3 | 0.005 | 0.92 | 0.0 | 0.05 | 15.33 | 0.01 | 2.271 | 4.65 | 0.46 | 9.6 | 90.3 | 0.1 | -5.00 | 0.69 | 0.76 | 1.74 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 16.63 | 0.00 | 2.259 | 7.50 | 0.37 | 9.4 | 90.6 | 0.0 | -0.83 | 1.23 | 0.70 | 0.78 | 1.30 | 10011 | 1254 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7K10 | 22619 | 2023-02-19 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V6C | 21068 | 2023-02-17 | 2019-12-04 | 4.5 | 4.50 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.04 | 13.78 | 0.00 | 2.226 | 7.10 | 0.00 | 5.1 | 94.9 | 0.0 | -4.56 | 0.42 | 0.82 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.04 | 14.26 | 0.00 | 2.222 | 6.48 | 0.23 | 4.7 | 95.3 | 0.0 | -0.11 | 2.03 | 0.42 | 0.81 | — | 4007 | 497 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HYD | 0308 | 2023-02-20 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.61 | 0.00 | 2.180 | 5.80 | 0.40 | 5.3 | 94.6 | 0.1 | -1.15 | 1.75 | 0.76 | 0.79 | 1.50 | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✔ | 7W84 | 32351 | 2023-02-21 | 2021-12-07 | 3.4 | 2.66 | — | 3.4 | 0.004 | 0.74 | 1.0 | 0.05 | 16.68 | 0.00 | 1.982 | 18.13 | 7.85 | 12.9 | 87.0 | 0.1 | -3.60 | 0.79 | 0.78 | 1.21 | 3.5 | 0.004 | 0.88 | 0.0 | 0.05 | 17.57 | 0.00 | 2.037 | 21.31 | 1.17 | 12.3 | 87.7 | 0.0 | -2.02 | 0.86 | 0.80 | 0.79 | 1.37 | 7879 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NUR | 12600 | 2023-02-18 | 2021-03-13 | 3.125 | 3.29 | — | 3.3 | 0.007 | 0.77 | 0.0 | 0.05 | 14.31 | 0.01 | 2.174 | 5.26 | 0.11 | 7.7 | 92.0 | 0.3 | -4.11 | 0.77 | 0.87 | 3.09 | 3.3 | 0.006 | 0.70 | 0.0 | 0.04 | 15.99 | 0.01 | 2.238 | 4.05 | 0.34 | 7.3 | 92.6 | 0.1 | -0.76 | 0.96 | 0.76 | 0.88 | 2.37 | 8245 | 1044 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BWM | 30233 | 2023-02-22 | 2020-04-15 | 2.9 | 2.97 | — | 2.9 | 0.005 | 0.78 | 0.0 | 0.05 | 14.21 | 0.00 | 2.048 | 7.32 | 7.21 | 5.8 | 94.0 | 0.3 | -3.28 | 0.76 | 0.85 | 4.49 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.51 | 0.00 | 2.140 | 6.52 | 1.75 | 5.6 | 94.4 | 0.0 | -1.07 | 1.12 | 0.79 | 0.87 | 3.54 | 9532 | 1219 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VH3 | 31985 | 2023-02-20 | 2021-09-20 | 3.6 | 3.70 | — | 3.7 | 0.005 | 1.09 | 0.0 | 0.06 | 11.49 | 0.01 | 2.257 | 7.95 | 0.90 | 8.5 | 91.0 | 0.4 | -4.84 | 0.68 | 0.69 | 1.85 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 15.45 | 0.00 | 2.153 | 13.94 | 0.21 | 8.1 | 91.8 | 0.1 | -1.28 | 1.66 | 0.70 | 0.73 | 1.52 | 12749 | 1612 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AWA | 11928 | 2023-02-17 | 2020-11-06 | 3.5 | 3.83 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.22 | 0.00 | 2.126 | 6.77 | 0.00 | 5.8 | 94.2 | 0.0 | -2.52 | 0.57 | 0.81 | 2.14 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.06 | 0.00 | 2.163 | 6.96 | 0.00 | 3.7 | 96.3 | 0.0 | -0.59 | 1.17 | 0.54 | 0.80 | 1.51 | 5310 | 328 | 1 | 0 | 0 | 0 | 2703 | logfile |
✔ | 6iG9 | 9664 | 2023-02-22 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ADM | 11731 | 2023-02-19 | 2020-09-15 | 3.5 | 3.77 | 3.57 | 3.8 | 0.013 | 1.98 | 3.0 | 0.11 | 15.37 | 0.02 | 2.582 | 0.00 | 0.73 | 11.9 | 88.1 | 0.0 | -2.91 | 0.49 | 0.70 | 2.46 | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 16.44 | 0.00 | 2.068 | 10.08 | 0.18 | 11.4 | 88.6 | 0.0 | -1.79 | 0.91 | 0.49 | 0.71 | 2.27 | 9726 | 614 | 1 | 0 | 0 | 0 | 4799 | logfile |
✔ | 6i26 | 0328 | 2023-02-24 | 2018-10-31 | 4.3 | 4.37 | — | 4.2 | 0.005 | 0.89 | 0.0 | 0.05 | 8.22 | 0.01 | 0.411 | 6.12 | 0.50 | 6.4 | 93.3 | 0.3 | -6.25 | 0.75 | 0.60 | — | 4.2 | 0.002 | 0.67 | 0.0 | 0.04 | 10.47 | 0.00 | 2.212 | 4.82 | 0.00 | 5.8 | 94.2 | 0.0 | 0.06 | 0.96 | 0.83 | 0.76 | — | 22765 | 3366 | 1 | 0 | 221 | 0 | 0 | logfile |