Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PPJ	13581	2022-11-29	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.35	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5175	643	1	0	1	0	0	logfile
✔	7S15	24794	2022-11-29	2021-09-01	3.8	4.41	—	4.2	0.007	0.99	0.0	0.05	16.51	0.01	2.174	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	4.2	0.003	0.71	0.0	0.04	18.35	0.00	2.283	11.87	0.58	5.9	94.1	0.0	-0.81	0.67	0.49	0.75	0.86	3207	382	1	0	1	0	0	logfile
✔	7N98	24252	2022-11-29	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.67	0.0	0.04	16.86	0.01	2.379	7.88	0.54	8.1	91.9	0.0	0.07	0.49	0.50	0.81	1.23	3625	473	1	0	0	0	0	logfile
✔	7RYQ	24745	2022-11-29	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.37	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.77	0.0	0.04	14.07	0.00	2.218	15.93	0.00	6.6	93.4	0.0	-0.30	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7ABK	11698	2022-11-29	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	7UNT	26632	2022-11-29	2022-04-11	3.6	3.69	3.38	3.4	0.002	0.60	0.0	0.05	14.28	0.00	2.356	6.56	0.00	9.1	90.5	0.4	-1.58	0.47	0.73	1.84	3.5	0.004	0.67	0.0	0.05	15.69	0.00	2.256	9.21	0.70	10.3	89.4	0.2	-1.22	0.66	0.49	0.84	1.39	3270	472	1	1	0	0	0	logfile
✔	7VV6	32139	2022-11-29	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.003	0.62	0.0	0.04	17.02	0.00	2.186	6.88	0.41	2.2	97.8	0.0	3.08	0.69	0.63	0.85	2.36	2227	271	1	0	2	0	0	logfile
✔	8CTJ	26992	2022-11-29	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.72	0.0	0.04	13.77	0.00	2.179	12.25	0.00	4.8	95.2	0.0	0.49	1.73	0.49	0.57	—	3312	401	1	0	1	0	0	logfile
✔	7XiZ	33213	2022-11-29	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.10	0.0	0.06	18.15	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.004	0.82	0.0	0.05	18.16	0.01	2.215	14.34	0.43	16.6	82.6	0.8	-3.64	1.53	0.37	0.73	1.52	2161	267	1	0	2	0	0	logfile
✔	6oUC	20202	2022-11-29	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.004	0.63	0.0	0.05	14.84	0.01	2.172	3.88	1.68	3.5	96.5	0.0	-0.43	1.18	0.64	0.90	3.76	3899	483	1	0	1	124	0	logfile
✔	7S8U	24922	2022-11-29	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.20	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5210	667	1	0	0	0	0	logfile
✔	7V0X	26952	2022-11-29	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	7.75	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.003	0.54	0.0	0.04	19.08	0.00	2.178	8.99	5.05	4.6	95.4	0.0	1.72	0.46	0.61	0.88	3.39	2818	375	1	0	0	0	0	logfile
✔	8CXo	27062	2022-11-29	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.75	0.0	0.04	15.76	0.00	2.158	15.14	0.43	4.2	95.8	0.0	1.18	2.09	0.62	0.80	0.81	4392	551	1	0	1	0	0	logfile
✔	7Y14	33556	2022-11-29	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.41	0.00	2.281	8.75	0.00	5.0	95.0	0.0	2.69	1.20	0.52	0.78	1.95	2145	265	1	0	4	0	0	logfile
✔	7MSX	23971	2022-11-29	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile
✔	7RSQ	24677	2022-11-29	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	5M6S	3451	2022-11-29	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✘	5A7U	3079	2022-11-29	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	6RJU	4906	2022-11-29	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✘	6V4D	21040	2022-11-29	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.75	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3095	422	1	0	0	0	0	logfile

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