Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RPJ	24616	2022-05-12	2021-08-03	3.2	3.54	3.29	3.6	0.013	1.72	5.0	0.10	13.93	0.01	2.458	3.70	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.003	0.69	0.0	0.04	14.77	0.00	2.160	8.46	0.25	3.2	96.8	0.0	1.22	1.13	0.66	0.83	1.73	7926	926	1	0	19	0	0	logfile
✔	7ABK	11698	2022-05-12	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.67	0.0	0.03	19.97	0.01	2.302	7.56	0.62	2.1	97.9	0.0	5.19	1.33	0.28	0.85	1.55	1574	196	1	0	0	0	0	logfile
✔	7K8B	22725	2022-05-12	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.19	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.63	0.64	5543	726	1	0	0	0	0	logfile
✔	7K8C	22726	2022-05-13	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	13.01	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.80	0.0	0.04	13.55	0.01	2.215	13.72	0.17	3.6	96.4	0.0	0.67	0.60	0.50	0.61	—	5524	723	1	0	0	0	0	logfile
✔	7PN1	13545	2022-05-13	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.004	0.67	0.0	0.04	14.54	0.00	1.917	7.03	0.18	2.8	97.2	0.0	1.37	0.97	0.60	0.80	0.70	10384	657	1	0	0	0	5237	logfile
✔	7K8A	22724	2022-05-13	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.85	0.0	0.04	15.78	0.01	2.217	13.77	0.51	4.3	95.7	0.0	-0.51	0.48	0.41	0.54	0.25	5513	723	1	0	0	0	0	logfile
✔	7N73	24218	2022-05-12	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.83	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.84	0.0	0.04	14.36	0.00	2.053	5.87	0.84	2.2	97.8	0.0	1.76	0.32	0.69	0.85	2.56	7866	1036	1	0	6	3	0	logfile
✔	7RD6	24413	2022-05-12	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.004	0.71	0.0	0.04	16.02	0.00	2.135	13.96	0.24	5.7	94.3	0.0	-1.35	0.42	0.57	0.73	1.95	7396	929	1	0	2	0	0	logfile
✔	7RPH	24614	2022-05-12	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.11	14.66	0.01	1.952	2.08	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	15.96	0.00	2.202	6.54	2.33	1.7	98.3	0.0	1.75	1.30	0.66	0.85	2.95	8573	926	1	0	36	86	0	logfile
✘	7FiJ	31599	2022-05-12	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3061	561	1	0	0	0	0	logfile
✔	7RD7	24414	2022-05-12	2021-07-09	3.08	3.26	—	3.3	0.005	1.33	0.0	0.05	13.97	0.01	1.902	8.98	0.00	7.1	92.9	0.0	-1.78	0.59	0.74	2.28	3.3	0.003	0.91	0.0	0.04	15.95	0.00	2.030	12.14	0.60	6.6	93.4	0.0	-0.95	0.32	0.61	0.76	1.99	7400	929	1	0	2	0	0	logfile
✔	7R9E	24324	2022-05-12	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.58	0.0	0.04	9.06	0.00	2.156	9.58	0.00	5.2	94.8	0.0	0.03	2.07	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7N77	24222	2022-05-12	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	12.82	0.01	1.692	9.69	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.004	0.91	0.0	0.04	13.99	0.00	1.946	6.28	0.28	3.1	96.9	0.0	1.32	1.62	0.67	0.80	1.30	7470	1036	1	0	4	2	0	logfile
✔	7N75	24220	2022-05-12	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.98	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.59	0.0	0.04	14.33	0.00	2.210	7.35	0.85	2.2	97.8	0.0	2.51	0.36	0.66	0.81	2.09	7381	1036	1	0	0	3	0	logfile
✔	7EZ0	31385	2022-05-12	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	14.43	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.69	0.0	0.04	15.71	0.00	1.877	8.66	0.00	0.0	0.0	0.0	—	1.91	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7N78	24223	2022-05-12	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.91	0.0	0.06	12.87	0.01	1.930	8.28	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.64	0.00	2.029	6.50	0.82	1.6	98.4	0.0	1.70	0.44	0.64	0.77	1.79	7669	1030	1	0	11	3	0	logfile
✘	7FBS	31519	2022-05-13	2021-07-12	3.4	3.24	—	3.2	0.021	1.19	0.0	0.09	18.03	0.01	1.222	18.70	3.06	7.4	92.5	0.1	-3.42	0.59	0.78	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9274	1118	1	0	17	0	0	logfile
✔	7N72	24217	2022-05-12	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.31	0.0	0.06	13.12	0.01	1.971	6.25	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.89	0.0	0.04	14.42	0.01	2.033	6.38	0.80	1.9	98.1	0.0	1.76	1.13	0.68	0.83	2.50	7705	1030	1	0	11	5	0	logfile
✔	7QFP	13946	2022-05-13	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.004	0.81	0.0	0.05	16.84	0.00	2.082	20.86	0.35	15.1	84.9	0.1	-3.13	0.78	0.85	0.77	0.49	9996	1233	1	0	0	0	0	logfile
✔	7oTW	13068	2022-05-16	2021-06-10	2.99	3.85	—	3.2	0.009	0.96	0.0	0.05	14.25	0.01	1.672	16.27	0.28	10.0	89.9	0.2	-2.30	0.80	0.71	1.78	3.2	0.003	0.77	0.0	0.04	15.63	0.00	2.140	12.39	0.84	6.4	93.5	0.1	-0.24	1.42	0.89	0.82	1.29	29038	3636	1	0	21	0	0	logfile

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