Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BWM	30233	2021-08-08	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.21	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.003	0.61	0.0	0.04	15.43	0.00	2.138	6.84	2.14	4.7	95.2	0.1	-0.57	0.90	0.79	0.86	3.46	9532	1219	1	0	0	0	0	logfile
✔	7JGF	22325	2021-08-07	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.46	0.0	0.04	13.27	0.00	2.169	51.21	0.41	5.3	94.7	0.0	1.46	0.77	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7KTV	23031	2021-08-07	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.78	0.0	0.04	12.93	0.00	2.161	20.21	0.12	3.6	96.4	0.0	-0.29	0.96	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	6WYJ	21966	2021-08-07	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.59	0.0	0.04	14.49	0.00	2.258	5.58	0.32	1.3	98.7	0.0	2.11	0.63	0.64	0.80	1.26	2949	398	1	0	0	0	0	logfile
✘	6L53	0836	2021-08-08	2019-10-22	3.63	3.79	—	3.7	0.002	0.70	0.0	0.04	9.71	0.00	2.193	8.52	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13991	1935	1	0	0	0	0	logfile
✔	7KTU	23030	2021-08-07	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.84	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.74	0.0	0.04	13.52	0.00	2.141	16.56	0.00	2.9	97.1	0.0	0.51	1.29	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7K10	22619	2021-08-07	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.004	0.75	0.0	0.04	16.60	0.00	2.120	7.89	0.55	11.1	88.9	0.1	-1.85	0.41	0.72	0.78	1.88	10037	1259	1	0	0	0	0	logfile
✔	6X2Z	22014	2021-08-07	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.85	2.63	3.2	0.003	0.65	0.0	0.04	16.30	0.01	2.221	9.70	0.28	2.7	97.3	0.0	1.10	0.97	0.45	0.86	2.20	3205	420	1	0	3	0	0	logfile
✔	6WYK	21967	2021-08-07	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.65	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.022	1.87	1.0	0.05	16.61	0.01	2.208	15.55	0.61	3.2	96.8	0.0	1.77	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	6RJU	4906	2021-08-07	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	7JGD	22323	2021-08-09	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.41	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.013	1.02	1.0	0.05	14.89	0.01	1.985	15.51	0.00	6.9	93.1	0.0	0.45	0.50	0.65	0.72	1.81	20292	1435	1	0	0	0	8505	logfile
✔	7K11	22620	2021-08-07	2020-09-06	3.21	3.34	—	3.3	0.005	0.93	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.012	1.15	1.0	0.04	16.75	0.00	2.203	8.10	0.27	8.9	91.1	0.0	-0.98	1.24	0.70	0.77	1.54	10011	1254	1	0	0	0	0	logfile
✔	7LQ6	23482	2021-08-07	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.26	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.004	0.68	0.0	0.04	16.38	0.01	2.148	6.43	0.18	4.2	95.8	0.0	0.16	1.01	0.92	0.89	1.74	5267	672	1	0	0	0	0	logfile
✔	6UY0	20945	2021-08-07	2019-11-09	3.23	3.39	—	3.4	0.020	1.88	0.0	0.34	13.91	0.00	1.861	1.07	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.003	0.81	0.0	0.11	16.06	0.00	2.049	7.76	0.09	2.3	97.7	0.0	1.78	1.55	0.69	0.85	1.36	9684	1210	1	0	7	0	0	logfile
✔	6WU0	21901	2021-08-07	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.49	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.004	0.79	0.0	0.04	15.88	0.01	2.180	11.57	0.46	6.5	93.5	0.0	0.26	0.55	0.54	0.63	0.62	6340	854	1	0	0	0	0	logfile
✔	6TAY	10430	2021-08-10	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.61	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	2.9	0.007	0.84	0.0	0.04	13.98	0.01	1.876	11.62	0.08	7.8	92.1	0.0	0.01	1.17	0.87	0.84	2.79	35241	4350	1	0	71	0	0	logfile
✔	7KTT	23029	2021-08-07	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.71	0.0	0.04	13.80	0.00	2.073	18.01	0.12	2.9	97.1	0.0	0.67	1.13	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✔	6YV1	10940	2021-08-07	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.67	0.0	0.04	14.42	0.00	2.288	7.04	0.00	2.6	97.4	0.0	1.10	0.66	0.51	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	7B54	12018	2021-08-08	2020-12-03	3.1	3.96	—	3.6	0.005	0.77	0.0	0.04	14.53	0.00	2.081	14.73	0.19	12.5	87.1	0.4	-1.25	0.82	0.82	1.99	3.6	0.003	0.69	0.0	0.04	15.79	0.00	2.088	11.95	0.13	11.3	88.4	0.3	-0.55	0.37	0.83	0.84	1.56	14148	1732	1	0	0	0	0	logfile
✘	7BC5	12139	2021-08-07	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile

• ← previous
• Page 3 of 276
• next →