Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XMS	22262	2023-08-10	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.004	0.60	0.0	0.04	14.23	0.00	1.797	5.19	0.11	4.7	95.3	0.0	0.03	0.36	0.74	0.89	1.89	8389	1091	1	0	2	0	0	logfile
✘	7QFQ	13947	2023-08-11	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10659	1291	1	0	0	0	0	logfile
✔	7N74	24219	2023-08-10	2021-06-09	2.8	3.52	2.84	3.3	0.006	0.89	0.0	0.10	12.93	0.01	1.844	7.52	0.00	2.2	97.8	0.0	0.74	0.75	0.84	3.27	3.3	0.002	0.57	0.0	0.04	14.64	0.00	2.167	4.93	2.06	1.9	98.1	0.0	2.39	0.54	0.68	0.82	2.46	7859	1036	1	0	4	3	0	logfile
✔	7XD7	33138	2023-08-10	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.66	0.0	0.04	15.12	0.00	1.878	8.19	0.00	0.0	0.0	0.0	—	2.01	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7V0X	26952	2023-08-09	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7WLL	32587	2023-08-11	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	8H8B	34541	2023-08-10	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	7oTV	13067	2023-08-20	2021-06-10	3.24	3.53	—	3.4	0.012	0.79	0.0	0.10	14.43	0.01	2.090	10.98	0.34	8.5	91.4	0.1	-1.18	0.71	0.65	0.82	3.4	0.003	0.73	0.0	0.04	16.62	0.00	2.121	10.10	0.31	6.1	93.9	0.0	-0.41	0.90	0.77	0.77	0.92	29041	3636	1	0	21	0	0	logfile
✔	7JGD	22323	2023-08-16	2020-07-19	3.38	3.68	—	3.6	0.002	0.43	0.0	0.05	12.94	0.00	2.123	11.45	0.00	3.9	96.1	0.0	1.18	0.61	0.66	2.22	3.6	0.003	0.53	0.0	0.05	14.82	0.00	2.054	14.21	0.08	7.3	92.7	0.0	0.43	0.52	0.63	0.71	1.77	20292	1435	1	0	0	0	8505	logfile
✔	7LCJ	23275	2023-08-09	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7XGR	33187	2023-08-09	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	7XD3	33134	2023-08-11	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.14	0.01	1.675	17.13	0.00	0.0	0.0	0.0	—	1.77	0.87	0.81	—	9062	0	1	423	28	0	0	logfile
✔	7JGG	22326	2023-08-09	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7oTP	13064	2023-08-20	2021-06-10	3.4	3.69	—	3.6	0.007	0.87	0.0	0.05	14.56	0.01	2.017	14.76	0.16	8.6	91.2	0.2	-1.62	0.80	0.80	1.68	3.6	0.003	0.70	0.0	0.04	15.93	0.00	1.972	10.80	0.28	6.4	93.6	0.0	-0.56	1.37	0.80	0.81	1.25	29039	3636	1	0	23	0	0	logfile
✔	7R76	24292	2023-08-13	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	7oTM	13062	2023-08-20	2021-06-10	3.33	3.97	—	3.7	0.008	0.93	1.0	0.05	14.51	0.01	2.071	16.56	0.28	9.2	90.6	0.2	-1.79	0.82	0.77	1.32	3.7	0.003	0.70	0.0	0.04	15.94	0.00	2.146	11.32	0.16	6.4	93.6	0.0	-0.53	1.41	0.84	0.80	0.80	29040	3636	1	0	21	0	0	logfile
✔	7oP8	13014	2023-08-10	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.63	0.0	0.04	16.12	0.00	1.389	10.40	0.21	6.2	93.8	0.0	-0.75	1.73	0.66	0.78	0.83	8872	1118	1	0	2	0	0	logfile
✔	6L53	0836	2023-08-13	2019-10-22	3.63	3.79	—	3.7	0.002	0.69	0.0	0.04	9.71	0.00	2.193	8.74	3.49	9.8	89.9	0.3	-4.90	0.77	0.70	0.79	3.7	0.003	0.90	0.0	0.05	14.19	0.01	2.107	14.14	0.43	11.3	88.6	0.1	-2.47	0.86	0.79	0.73	0.95	13991	1935	1	0	0	0	0	logfile
✔	6S7P	10111	2023-08-11	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.25	0.00	1.994	5.67	0.11	2.0	98.0	0.0	1.00	0.55	0.66	0.85	2.59	9028	1128	1	0	11	0	0	logfile
✔	7M69	23691	2023-08-16	2021-03-25	3.42	4.12	4.11	4.1	0.006	0.87	0.0	0.04	13.25	0.01	2.304	0.82	1.29	5.1	94.9	0.0	-0.08	0.52	0.70	1.11	4.1	0.004	0.62	0.0	0.04	15.62	0.00	1.963	12.37	0.51	6.3	93.7	0.0	0.51	1.07	0.53	0.73	0.78	21781	1390	1	0	0	0	10898	logfile

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