Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YNV	10857	2021-12-01	2020-04-14	2.8	3.33	2.74	3.2	0.099	2.07	0.0	0.05	17.51	0.01	1.398	5.80	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.003	0.58	0.0	0.04	16.78	0.00	2.217	2.68	0.84	4.8	95.2	0.0	0.30	1.43	0.65	0.90	5.16	6724	417	1	0	1	0	3285	logfile
✘	7oP8	13014	2021-12-01	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.24	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8872	1118	1	0	2	0	0	logfile
✔	7DTC	30850	2021-12-01	2021-01-04	3.3	3.73	—	3.6	0.004	0.68	0.0	0.04	14.07	0.00	2.201	12.17	0.49	7.9	91.6	0.4	-3.34	0.52	0.80	1.81	3.5	0.003	0.77	0.0	0.04	16.13	0.00	2.222	11.22	0.59	8.6	91.4	0.1	0.36	1.35	0.54	0.82	1.30	9363	1151	1	0	9	0	0	logfile
✔	6XMQ	22261	2021-12-01	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.64	0.0	0.04	12.85	0.00	1.660	6.11	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.003	0.56	0.0	0.04	15.16	0.00	1.960	6.53	0.22	3.4	96.6	0.0	0.72	1.28	0.72	0.86	1.31	8362	1085	1	0	2	0	0	logfile
✔	7KTW	23032	2021-12-01	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.79	0.0	0.04	13.24	0.00	2.137	19.56	0.12	3.3	96.7	0.0	0.47	0.94	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✘	7BC5	12139	2021-12-01	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1200	161	1	0	0	0	0	logfile
✔	7LCJ	23275	2021-12-01	2021-01-11	2.82	3.02	2.78	3.1	0.010	1.51	3.0	0.24	15.14	0.01	2.216	8.57	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.004	0.60	0.0	0.04	17.06	0.00	2.254	4.99	1.16	1.8	98.2	0.0	1.29	1.69	0.49	0.82	3.04	3264	390	1	0	1	17	0	logfile
✔	7K11	22620	2021-12-01	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.66	0.0	0.04	16.62	0.00	2.225	7.25	0.09	8.7	91.3	0.0	-1.01	1.23	0.70	0.77	1.32	10011	1254	1	0	0	0	0	logfile
✔	6X2Z	22014	2021-12-01	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.85	2.63	3.2	0.003	0.68	0.0	0.04	16.16	0.01	2.184	10.16	0.28	3.1	96.9	0.0	0.65	0.95	0.44	0.87	2.16	3205	420	1	0	3	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7LCK	23276	2021-12-01	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.67	0.0	0.04	16.53	0.00	2.249	5.14	0.29	3.6	96.4	0.0	0.85	0.56	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✘	6LQA	0942	2021-12-01	2020-01-13	3.3	3.51	—	3.5	0.008	1.28	0.0	0.07	14.15	0.01	1.369	15.36	6.02	7.8	91.4	0.9	-4.09	0.56	0.77	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	6ZPG	11338	2021-12-01	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.60	—	3808	463	1	0	0	0	0	logfile
✔	7K1V	22630	2021-12-01	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.8	0.003	0.71	0.0	0.04	14.11	0.01	2.178	18.70	0.00	5.2	94.8	0.0	-1.01	1.44	0.70	0.75	—	4971	626	1	0	0	0	0	logfile
✔	7K10	22619	2021-12-01	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.005	0.72	0.0	0.04	16.51	0.01	2.099	7.64	0.18	9.5	90.4	0.1	-1.67	0.41	0.72	0.78	1.66	10037	1259	1	0	0	0	0	logfile
✔	6XLY	22252	2021-12-01	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.003	0.60	0.0	0.04	15.59	0.00	2.135	11.79	0.19	2.8	97.2	0.0	0.46	0.56	0.88	0.84	1.55	5111	646	1	0	1	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7JGF	22325	2021-12-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.51	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.23	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7K8B	22725	2021-12-01	2020-09-26	2.94	2.86	—	3.1	0.005	0.83	2.0	0.05	14.13	0.01	2.214	14.30	0.68	5.5	94.5	0.0	-0.97	0.41	0.61	1.17	3.1	0.003	0.79	0.0	0.04	16.91	0.01	2.147	15.10	2.36	5.4	94.6	0.0	-0.14	1.19	0.42	0.64	0.64	5543	726	1	0	0	0	0	logfile
✔	7RSQ	24677	2021-12-01	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile

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