Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K8C	22726	2021-11-02	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	12.83	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.80	0.0	0.04	13.34	0.01	2.196	13.19	0.17	4.3	95.7	0.0	0.57	1.24	0.49	0.60	—	5524	723	1	0	0	0	0	logfile
✔	7K8A	22724	2021-11-02	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.00	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.86	0.0	0.04	16.05	0.01	2.176	14.84	0.34	4.0	95.8	0.1	-0.58	0.53	0.42	0.55	0.24	5513	723	1	0	0	0	0	logfile
✔	6XLY	22252	2021-11-01	2020-06-29	3.1	4.00	3.11	3.5	0.006	0.95	0.0	0.05	15.47	0.01	2.336	4.00	0.97	4.3	95.7	0.0	-5.77	0.86	0.77	1.71	3.6	0.004	0.61	0.0	0.04	15.56	0.00	2.125	11.39	0.19	3.3	96.7	0.0	0.58	0.55	0.88	0.84	1.40	5111	646	1	0	1	0	0	logfile
✔	7KPW	22990	2021-11-01	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.83	0.0	0.04	6.77	0.00	2.104	3.11	0.00	12.4	87.0	0.6	-1.27	2.14	0.83	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7KTT	23029	2021-11-01	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.74	0.0	0.04	13.70	0.00	2.081	18.40	0.12	3.4	96.6	0.0	0.77	1.14	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✘	6LQA	0942	2021-11-01	2020-01-13	3.3	3.51	—	3.5	0.008	1.28	0.0	0.07	14.15	0.01	1.369	15.36	6.02	7.8	91.4	0.9	-4.09	0.56	0.77	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	7A8P	11679	2021-11-01	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.5	0.015	1.15	0.0	0.04	17.03	0.01	2.067	9.75	0.00	2.3	97.7	0.0	2.47	0.52	0.73	0.80	1.92	7305	911	1	0	1	0	0	logfile
✘	6YJ5	10816	2021-11-01	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2061	306	1	0	0	0	0	logfile
✔	7LCJ	23275	2021-11-01	2021-01-11	2.82	3.02	2.78	3.1	0.010	1.51	3.0	0.24	15.14	0.01	2.216	8.57	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.54	0.0	0.03	16.94	0.00	2.243	5.14	0.87	1.6	98.4	0.0	1.60	1.70	0.50	0.82	2.88	3264	390	1	0	1	17	0	logfile
✔	6X12	21986	2021-11-01	2020-05-18	3.52	3.69	—	3.7	0.007	1.08	0.0	0.06	15.27	0.01	2.322	3.01	0.00	2.7	97.3	0.0	-5.29	0.65	0.84	1.43	3.7	0.003	0.66	0.0	0.04	15.90	0.00	2.262	7.45	0.63	2.7	97.3	0.0	0.40	1.20	0.67	0.84	0.94	3059	407	1	0	1	0	0	logfile
✔	6X13	21987	2021-11-01	2020-05-18	3.66	3.77	—	3.8	0.005	1.04	1.0	0.05	17.10	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.005	0.73	0.0	0.04	16.19	0.01	2.284	9.29	0.00	5.5	94.5	0.0	1.48	0.42	0.64	0.84	1.98	3136	417	1	0	1	0	0	logfile
✔	6ZH2	11211	2021-11-04	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.54	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.003	0.68	0.0	0.04	15.89	0.00	2.166	12.53	0.19	5.7	94.3	0.0	0.51	1.52	0.87	0.86	1.16	29313	3676	1	0	28	0	0	logfile
✔	7JGE	22324	2021-11-03	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	13.93	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.59	0.0	0.06	16.18	0.00	2.008	20.05	0.38	7.8	92.2	0.0	-0.11	1.26	0.59	0.60	—	20315	1437	1	0	0	0	8508	logfile
✔	7KTW	23032	2021-11-01	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.79	0.0	0.04	13.25	0.00	2.148	20.08	0.00	2.8	97.2	0.0	0.66	1.03	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	7DTC	30850	2021-11-01	2021-01-04	3.3	3.73	—	3.6	0.004	0.68	0.0	0.04	14.07	0.00	2.201	12.17	0.49	7.9	91.6	0.4	-3.34	0.52	0.80	1.81	3.5	0.017	1.12	1.0	0.04	16.17	0.01	2.228	10.74	0.59	8.2	91.8	0.0	0.46	1.37	0.54	0.82	1.31	9363	1151	1	0	9	0	0	logfile
✔	6ZFP	11185	2021-11-04	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	11.02	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.003	0.63	0.0	0.04	15.69	0.00	2.221	7.84	0.09	5.9	94.1	0.0	0.46	0.79	0.80	0.78	1.14	29385	3676	1	0	28	0	0	logfile
✔	7LCK	23276	2021-11-01	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.65	0.0	0.04	16.53	0.00	2.250	4.99	0.29	3.4	96.6	0.0	0.76	1.11	0.66	0.79	1.98	3258	390	1	0	1	11	0	logfile
✔	7NVH	12604	2021-11-01	2021-03-15	3.0	3.23	3.00	3.2	0.005	0.65	0.0	0.04	14.11	0.01	2.145	7.70	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.57	0.0	0.04	15.21	0.00	2.257	6.90	0.87	3.9	96.1	0.0	1.24	0.91	0.65	0.87	2.50	5528	717	1	0	1	0	0	logfile
✔	7RPJ	24616	2021-11-01	2021-08-03	3.2	3.54	3.29	3.6	0.046	3.44	5.0	0.52	18.92	0.01	2.458	3.51	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.004	0.95	1.0	0.05	15.48	0.00	2.189	24.37	0.37	3.2	96.8	0.0	0.92	1.12	0.66	0.83	1.83	7926	926	1	0	19	0	0	logfile
✔	7PN1	13545	2021-11-02	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.008	1.19	0.0	0.04	14.95	0.01	1.932	9.35	0.18	2.2	97.8	0.0	1.43	0.99	0.61	0.80	0.84	10384	657	1	0	0	0	5237	logfile

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