Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6KLC	0706	2022-04-05	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	10.92	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.003	0.82	0.0	0.05	16.24	0.00	2.114	12.77	0.40	9.4	90.5	0.1	-0.61	2.05	0.75	0.78	0.84	11210	1436	1	0	1	0	0	logfile
✔	6V4D	21040	2022-04-04	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.80	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.88	0.0	0.05	16.75	0.01	2.085	13.54	1.01	6.2	93.8	0.0	-0.80	0.63	0.46	0.79	1.50	3095	422	1	0	0	0	0	logfile
✔	6V5V	21054	2022-04-04	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.83	2.06	3.9	0.002	0.54	0.0	0.04	14.64	0.00	2.192	7.93	0.30	3.2	96.8	0.0	0.28	0.57	0.53	0.82	1.76	2979	369	1	1	0	0	0	logfile
✔	5G2Y	3332	2022-04-05	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6U2K	20621	2022-04-04	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.72	0.0	0.04	15.07	0.01	2.262	7.00	2.12	8.7	91.3	0.0	-1.93	1.20	0.65	0.81	2.86	4719	604	1	0	4	0	0	logfile
✔	6SKZ	10232	2022-04-06	2019-08-16	3.4	3.55	—	3.5	0.011	0.82	1.0	0.05	14.81	0.01	1.872	8.62	5.39	7.4	92.5	0.1	-3.09	0.72	0.81	1.81	3.5	0.003	0.59	0.0	0.04	16.21	0.00	2.179	7.24	0.31	4.2	95.8	0.0	1.29	0.75	0.73	0.83	1.68	20930	2638	1	0	2	0	0	logfile
✔	6DMo	7964	2022-04-04	2018-06-05	4.1	4.16	—	4.1	0.008	1.26	0.0	0.06	13.66	0.01	1.764	8.90	2.78	11.1	88.6	0.3	-4.11	0.55	0.64	—	4.1	0.004	0.87	0.0	0.05	13.51	0.00	2.132	16.09	0.00	10.5	89.5	0.0	-0.53	1.27	0.59	0.72	—	7853	982	1	0	7	0	0	logfile
✔	6KZo	0791	2022-04-04	2019-09-25	3.3	3.57	—	3.5	0.014	1.41	3.0	0.10	15.51	0.01	2.196	36.78	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.013	1.28	1.0	0.04	16.65	0.01	2.110	7.73	1.17	3.7	96.2	0.1	0.35	1.33	0.61	0.84	2.18	8238	967	1	0	22	0	0	logfile
✔	5M5H	4155	2022-04-04	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6UZ3	20951	2022-04-04	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.21	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.82	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✔	6XTB	10618	2022-04-04	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✘	5X0M	6698	2022-04-05	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	3JD8	6640	2022-04-05	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.00	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.86	0.0	0.05	12.39	0.00	2.043	17.95	0.00	8.6	90.5	0.9	-0.81	1.76	0.57	0.72	—	8050	1133	1	0	25	0	0	logfile
✔	5A22	6337	2022-04-08	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.01	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.011	1.07	1.0	0.04	16.85	0.01	1.842	19.42	0.89	13.6	85.3	1.1	-1.79	2.67	0.69	0.76	1.46	32187	2002	1	0	2	0	16110	logfile
✔	6S7P	10111	2022-04-04	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.19	0.00	1.992	5.51	0.22	2.0	98.0	0.0	1.12	0.54	0.65	0.85	2.61	9028	1128	1	0	11	0	0	logfile
✔	5M6S	3451	2022-04-04	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	5UAR	8461	2022-04-04	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	10.94	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✔	6HYD	0308	2022-04-05	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.59	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.69	0.0	0.04	14.49	0.00	2.163	5.47	0.24	5.8	94.0	0.2	-1.37	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✔	6YJ5	10816	2022-04-04	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.67	0.0	0.05	15.25	0.01	2.265	7.92	0.61	8.2	91.8	0.0	-1.96	0.81	0.51	0.72	2.81	2061	306	1	0	0	0	0	logfile
✔	6TAX	10429	2022-04-08	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.46	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.009	0.88	1.0	0.04	13.78	0.01	1.933	11.83	0.08	8.2	91.8	0.0	-0.33	1.90	0.89	0.82	2.08	35235	4349	1	0	71	0	0	logfile

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