Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XoW	22282	2023-11-14	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.003	0.72	0.0	0.04	13.41	0.00	2.180	17.36	0.23	3.1	96.9	0.0	0.65	0.79	0.91	0.81	—	7711	966	1	0	0	0	0	logfile
✔	8H4U	34484	2023-11-14	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.003	0.58	0.0	0.04	18.41	0.00	2.187	8.96	0.12	5.8	94.2	0.0	1.77	1.02	0.74	0.82	0.62	7944	959	1	0	0	0	0	logfile
✔	5Lii	4053	2023-11-13	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	8CTJ	26992	2023-11-13	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.75	0.0	0.04	13.84	0.00	2.095	14.04	0.00	5.1	94.9	0.0	-0.14	1.80	0.49	0.58	—	3312	401	1	0	1	0	0	logfile
✔	6LN5	0924	2023-11-14	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.63	0.0	0.04	12.32	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.002	0.53	0.0	0.04	16.29	0.00	2.241	5.89	1.97	1.7	98.3	0.0	0.73	1.33	0.68	0.85	3.01	7840	1011	1	0	4	0	0	logfile
✔	8JHU	36294	2023-11-14	2023-05-25	3.1	3.30	3.08	3.3	0.003	0.59	0.0	0.04	15.64	0.01	2.200	10.88	0.82	5.4	94.1	0.5	-0.27	0.69	0.84	2.83	3.3	0.005	0.60	0.0	0.04	16.05	0.00	2.160	10.95	0.55	6.4	93.6	0.0	0.04	0.37	0.70	0.87	3.37	6554	811	1	0	0	0	0	logfile
✔	5LiJ	4054	2023-11-13	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.17	0.0	0.04	10.44	0.00	2.149	15.78	0.00	35.3	64.7	0.0	-5.53	1.48	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7R1Y	14243	2023-11-13	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.61	0.0	0.04	16.45	0.00	2.104	13.37	3.13	4.0	96.0	0.0	0.97	1.13	0.74	0.74	2.05	5704	723	1	0	0	0	0	logfile
✘	5X1G	6701	2023-11-13	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	7PTX	13642	2023-11-14	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.003	0.77	0.0	0.04	14.49	0.00	2.255	17.66	0.00	9.0	91.0	0.0	-1.21	0.49	0.85	0.73	—	7653	1000	1	0	0	0	0	logfile
✔	8JW4	36679	2023-11-14	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.003	0.66	0.0	0.04	14.13	0.00	2.179	5.92	0.19	5.7	94.3	0.0	-1.07	1.35	0.63	0.73	0.99	9582	1191	1	0	0	0	0	logfile
✔	7VV6	32139	2023-11-13	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	6oUC	20202	2023-11-13	2019-05-04	2.8	3.00	—	3.0	0.008	1.15	1.0	0.08	9.03	0.01	2.131	6.96	0.00	3.5	96.5	0.0	-2.32	0.62	0.88	5.44	3.0	0.003	0.57	0.0	0.05	14.54	0.01	2.233	4.42	0.96	2.7	97.3	0.0	-0.27	1.18	0.64	0.90	3.37	3899	483	1	0	1	124	0	logfile
✔	3J9E	6240	2023-11-13	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.004	0.78	0.0	0.04	17.71	0.00	2.103	10.58	0.46	7.9	91.5	0.6	0.80	1.24	0.72	0.85	3.33	4098	520	1	0	0	0	0	logfile
✔	3J9D	6239	2023-11-13	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.83	0.0	0.04	17.52	0.00	2.197	15.77	0.60	7.4	91.9	0.7	-1.61	2.37	0.75	0.84	2.85	6086	746	1	0	1	0	0	logfile
✔	8F6T	28890	2023-11-13	2022-11-17	2.76	3.61	2.91	3.4	0.004	0.63	0.0	0.04	12.87	0.00	2.119	4.79	0.00	5.4	94.6	0.0	0.80	0.65	0.86	3.26	3.4	0.003	0.56	0.0	0.04	14.75	0.00	2.183	5.23	0.28	5.0	95.0	0.0	0.62	0.36	0.62	0.84	2.54	3473	428	1	0	4	0	0	logfile
✔	8P34	17383	2023-11-13	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.50	0.0	0.05	13.21	0.00	2.693	0.69	0.00	4.3	95.7	0.0	-1.63	0.36	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	7ZZ4	15034	2023-11-13	2022-05-25	2.63	3.04	2.56	2.2	0.008	1.05	0.0	0.05	17.04	0.00	2.035	5.21	0.27	3.3	96.7	0.0	-0.79	0.86	0.84	4.14	2.2	0.003	0.54	0.0	0.04	17.07	0.00	1.948	10.15	1.59	3.7	96.3	0.0	0.70	0.28	0.87	0.85	3.99	3682	463	1	0	3	11	0	logfile
✔	5YW7	6847	2023-11-14	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.10	0.00	2.227	12.04	0.00	3.8	96.2	0.0	0.76	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	6V6C	21068	2023-11-13	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.4	0.003	0.67	0.0	0.04	14.26	0.00	2.222	6.48	0.23	4.7	95.3	0.0	-0.11	2.03	0.42	0.81	—	4007	497	1	0	0	0	0	logfile

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