Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oEU	7795	2022-07-03	2019-03-27	3.5	3.62	—	3.9	0.014	1.89	3.0	0.11	15.00	0.00	2.157	5.92	0.85	10.3	89.6	0.1	-3.81	0.41	0.65	1.69	3.7	0.014	1.42	0.0	0.04	16.64	0.01	1.735	14.70	0.28	8.5	91.4	0.1	-0.52	1.53	0.47	0.69	0.92	7310	964	1	0	8	0	0	logfile
✔	6UZ3	20951	2022-07-03	2019-11-14	3.5	3.88	—	3.8	0.022	1.32	3.0	0.15	17.52	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.005	0.86	0.0	0.05	17.39	0.01	2.070	18.87	0.84	7.6	92.3	0.1	-0.71	0.66	0.42	0.70	0.92	9446	1126	1	0	25	0	0	logfile
✔	6SL1	10234	2022-07-04	2019-08-16	3.6	3.62	—	3.5	0.011	0.83	0.0	0.05	14.89	0.01	2.016	13.61	6.72	8.4	91.4	0.2	-4.42	0.72	0.80	2.39	3.5	0.009	1.02	1.0	0.04	16.25	0.01	1.647	9.54	0.44	4.2	95.8	0.0	-0.18	0.79	0.72	0.80	1.79	21041	2652	1	0	2	0	0	logfile
✔	6UES	20755	2022-07-03	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	17.15	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.87	0.0	0.04	21.10	0.01	1.792	36.17	0.00	0.0	0.0	0.0	—	1.34	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6U2K	20621	2022-07-03	2019-08-20	2.93	3.31	3.29	3.3	0.010	0.98	0.0	0.06	10.03	0.01	2.354	3.34	0.19	9.7	90.3	0.0	-4.70	0.70	0.83	4.65	3.3	0.004	0.72	0.0	0.04	15.07	0.01	2.262	7.00	2.12	8.7	91.3	0.0	-1.93	1.20	0.65	0.81	2.86	4719	604	1	0	4	0	0	logfile
✔	6JNC	9847	2022-07-03	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.48	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.003	0.58	0.0	0.05	15.72	0.00	2.278	6.21	0.59	3.1	96.9	0.0	-1.13	1.79	0.52	0.88	2.22	3294	419	1	0	1	0	0	logfile
✘	6JND	9848	2022-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3294	419	1	0	1	0	0	logfile
✔	6KLC	0706	2022-07-03	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	11.06	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.003	0.82	0.0	0.05	16.24	0.00	2.114	12.81	0.40	9.4	90.5	0.1	-0.61	2.05	0.75	0.78	0.84	11210	1436	1	0	1	0	0	logfile
✔	6DMB	7963	2022-07-03	2018-06-04	3.9	4.13	—	4.0	0.009	1.35	0.0	0.07	13.32	0.01	2.266	6.34	1.94	13.2	86.2	0.6	-4.55	0.61	0.78	2.39	4.0	0.005	0.88	0.0	0.05	15.88	0.01	2.132	13.63	1.46	13.6	86.4	0.0	-0.90	1.80	0.63	0.79	0.87	7945	990	1	0	9	0	0	logfile
✔	6UM1	20815	2022-07-04	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.16	0.01	2.014	9.77	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.009	1.18	1.0	0.05	16.48	0.01	2.007	19.99	0.00	12.3	87.6	0.1	-3.55	1.16	0.72	0.75	2.16	17134	2208	1	0	8	0	0	logfile
✔	5V7V	8642	2022-07-03	2017-03-20	3.9	3.88	—	3.8	0.011	1.19	1.0	0.06	12.64	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.65	0.0	0.04	15.80	0.00	1.965	15.13	0.57	9.4	90.6	0.0	-1.01	1.02	0.61	0.78	0.54	9919	613	1	0	9	0	4811	logfile
✔	6i5A	4413	2022-07-02	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.88	4.22	1206	153	1	0	0	0	0	logfile
✔	5UAR	8461	2022-07-03	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.36	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	11.10	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✔	6KZP	0792	2022-07-03	2019-09-25	3.1	2.67	—	3.1	0.013	1.45	1.0	0.08	14.32	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.61	0.0	0.04	16.37	0.00	2.316	5.17	0.11	2.9	97.1	0.0	1.33	0.68	0.59	0.82	2.38	8557	1014	1	0	18	0	0	logfile
✔	6iG9	9664	2022-07-04	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.13	0.00	2.207	2.18	0.00	8.6	91.4	0.0	0.94	1.55	0.84	0.80	—	17122	3386	1	0	0	0	0	logfile
✔	6HYD	0308	2022-07-03	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.69	0.0	0.04	14.49	0.00	2.163	5.59	0.24	5.8	94.0	0.2	-1.37	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✘	6UoX	20834	2022-07-03	2019-10-15	4.02	4.28	—	4.1	0.010	1.17	1.0	0.08	11.80	0.01	2.461	0.89	0.00	8.2	91.8	0.0	-4.01	0.66	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9138	1161	1	0	14	0	0	logfile
✔	5YW7	6847	2022-07-03	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.01	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.70	0.0	0.04	13.00	0.00	2.220	12.04	0.00	3.0	97.0	0.0	0.73	1.83	0.71	0.80	—	8944	1140	1	0	2	0	0	logfile
✔	6WYK	21967	2022-07-02	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.005	0.89	0.0	0.05	16.27	0.01	2.217	12.88	0.31	1.9	98.1	0.0	1.71	0.87	0.61	0.77	—	3083	415	1	0	0	0	0	logfile
✔	7LCK	23276	2022-07-02	2021-01-11	3.24	3.84	3.15	3.6	0.008	1.05	4.0	0.07	14.23	0.01	2.160	7.79	1.16	6.7	93.3	0.0	-0.93	0.69	0.79	2.21	3.7	0.003	0.62	0.0	0.04	15.17	0.00	2.228	4.83	0.58	4.1	95.9	0.0	0.64	0.55	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile

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