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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5YWD | 6853 | 2022-12-12 | 2017-11-29 | 4.2 | 4.38 | 4.11 | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 14.12 | 0.00 | 2.031 | 12.08 | 6.20 | 4.1 | 95.9 | 0.0 | -1.54 | 0.62 | 0.74 | — | 4.2 | 0.003 | 0.78 | 1.0 | 0.04 | 13.43 | 0.00 | 1.927 | 14.38 | 0.00 | 4.5 | 95.5 | 0.0 | 1.02 | 1.84 | 0.65 | 0.77 | — | 8997 | 1154 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6KZP | 0792 | 2022-12-12 | 2019-09-25 | 3.1 | 2.67 | — | 3.1 | 0.013 | 1.45 | 1.0 | 0.08 | 14.32 | 0.01 | 2.390 | 10.56 | 2.44 | 3.3 | 96.4 | 0.3 | -4.53 | 0.59 | 0.81 | 3.72 | 3.1 | 0.002 | 0.59 | 0.0 | 0.04 | 16.27 | 0.00 | 2.267 | 4.94 | 0.00 | 2.4 | 97.6 | 0.0 | 1.47 | 0.69 | 0.59 | 0.83 | 2.40 | 8557 | 1014 | 1 | 0 | 18 | 0 | 0 | logfile |
✔ | 6S7P | 10111 | 2022-12-12 | 2019-07-05 | 3.2 | 3.38 | — | 3.4 | 0.009 | 1.13 | 0.0 | 0.08 | 10.36 | 0.01 | 2.085 | 3.44 | 0.33 | 2.8 | 97.2 | 0.0 | -3.03 | 0.65 | 0.83 | 4.30 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 14.19 | 0.00 | 1.992 | 5.56 | 0.22 | 2.0 | 98.0 | 0.0 | 1.12 | 0.54 | 0.64 | 0.85 | 2.61 | 9028 | 1128 | 1 | 0 | 11 | 0 | 0 | logfile |
✔ | 6HYD | 0308 | 2022-12-12 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 14.53 | 0.00 | 2.171 | 5.59 | 0.24 | 5.6 | 94.2 | 0.2 | -1.67 | 1.74 | 0.77 | 0.80 | 1.55 | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✔ | 6N9Y | 0383 | 2022-12-11 | 2018-12-04 | 4.0 | 3.80 | — | 3.7 | 0.008 | 1.10 | 0.0 | 0.05 | 10.30 | 0.01 | 2.229 | 5.13 | 0.42 | 9.1 | 90.9 | 0.0 | -4.98 | 0.38 | 0.73 | — | 3.7 | 0.003 | 0.69 | 0.0 | 0.04 | 15.57 | 0.00 | 2.155 | 14.28 | 0.00 | 8.9 | 91.1 | 0.0 | -1.04 | 1.76 | 0.40 | 0.78 | — | 4527 | 552 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JND | 9848 | 2022-12-11 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 4.09 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | 3.9 | 0.006 | 0.70 | 0.0 | 0.05 | 15.68 | 0.00 | 2.212 | 9.85 | 0.59 | 5.8 | 94.2 | 0.0 | -1.24 | 0.92 | 0.48 | 0.88 | 2.09 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2022-12-11 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2022-12-13 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.80 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.003 | 0.90 | 0.0 | 0.04 | 11.48 | 0.00 | 2.173 | 16.33 | 0.00 | 15.8 | 81.5 | 2.7 | -1.63 | 0.94 | 0.65 | 0.62 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C0V | 7325 | 2022-12-12 | 2018-01-02 | 3.4 | 3.67 | — | 3.9 | 0.008 | 1.14 | 0.0 | 0.06 | 12.84 | 0.00 | 1.961 | 0.39 | 0.00 | 4.3 | 95.7 | 0.0 | -2.20 | 0.42 | 0.67 | 2.82 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.27 | 0.00 | 1.967 | 7.69 | 0.64 | 2.4 | 97.6 | 0.0 | 1.00 | 1.19 | 0.58 | 0.86 | 2.07 | 8976 | 1154 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5W81 | 8782 | 2022-12-12 | 2017-06-21 | 3.37 | 3.79 | — | 3.9 | 0.008 | 1.26 | 1.0 | 0.06 | 13.30 | 0.00 | 1.940 | 1.47 | 0.00 | 5.1 | 94.9 | 0.0 | -3.11 | 0.45 | 0.60 | 0.57 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.92 | 0.00 | 1.895 | 8.05 | 0.30 | 3.2 | 96.7 | 0.1 | 0.15 | 1.56 | 0.57 | 0.82 | 1.39 | 9393 | 1173 | 1 | 0 | 4 | 0 | 0 | logfile |
✘ | 6YV1 | 10940 | 2022-12-18 | 2020-04-27 | 3.4 | 4.09 | 3.01 | 3.7 | 0.002 | 0.58 | 0.0 | 0.04 | 12.66 | 0.00 | 2.272 | 8.02 | 1.85 | 1.0 | 99.0 | 0.0 | -4.45 | 0.52 | 0.76 | 1.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2496 | 328 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KLD | 0707 | 2022-12-12 | 2019-07-30 | 3.58 | 3.66 | — | 3.6 | 0.003 | 0.63 | 0.0 | 0.04 | 14.00 | 0.00 | 2.199 | 8.16 | 0.00 | 9.2 | 90.7 | 0.1 | -0.76 | 0.74 | 0.82 | 2.05 | 3.6 | 0.003 | 0.66 | 0.0 | 0.04 | 15.92 | 0.00 | 2.128 | 9.22 | 0.28 | 8.8 | 91.1 | 0.1 | -0.13 | 0.43 | 0.72 | 0.81 | 1.47 | 12794 | 1617 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LLY | 0915 | 2022-12-11 | 2019-12-24 | 2.8 | 2.92 | 2.72 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 12.24 | 0.00 | 2.043 | 6.26 | 0.12 | 3.1 | 96.9 | 0.0 | -4.03 | 0.66 | 0.79 | 2.62 | 2.9 | 0.003 | 0.57 | 0.0 | 0.04 | 15.47 | 0.00 | 1.330 | 8.18 | 1.16 | 2.9 | 97.1 | 0.0 | 0.06 | 0.49 | 0.64 | 0.80 | 1.86 | 7774 | 1006 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6LN9 | 0928 | 2022-12-11 | 2019-12-28 | 3.4 | 3.61 | 3.06 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 12.32 | 0.00 | 2.075 | 7.70 | 0.00 | 4.1 | 95.9 | 0.0 | -3.36 | 0.63 | 0.73 | 1.41 | 3.6 | 0.003 | 0.60 | 0.0 | 0.04 | 14.86 | 0.00 | 1.358 | 10.76 | 0.24 | 4.5 | 95.5 | 0.0 | -0.23 | 0.53 | 0.62 | 0.75 | 1.21 | 7612 | 987 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KLC | 0706 | 2022-12-12 | 2019-07-30 | 3.9 | 3.97 | — | 3.9 | 0.003 | 0.70 | 0.0 | 0.04 | 13.24 | 0.00 | 2.198 | 11.06 | 0.64 | 9.3 | 90.5 | 0.2 | -3.27 | 0.73 | 0.77 | 1.53 | 3.9 | 0.004 | 0.81 | 0.0 | 0.05 | 16.14 | 0.00 | 2.094 | 13.94 | 0.56 | 10.2 | 89.8 | 0.1 | -0.58 | 1.54 | 0.74 | 0.78 | 1.11 | 11210 | 1436 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6LN7 | 0926 | 2022-12-11 | 2019-12-28 | 2.8 | 2.90 | 2.71 | 2.9 | 0.005 | 0.65 | 0.0 | 0.04 | 11.73 | 0.00 | 2.101 | 5.77 | 0.00 | 2.3 | 97.7 | 0.0 | -3.93 | 0.70 | 0.85 | 3.69 | 2.9 | 0.002 | 0.56 | 0.0 | 0.04 | 16.48 | 0.00 | 2.243 | 6.34 | 1.39 | 2.0 | 98.0 | 0.0 | 0.79 | 0.48 | 0.69 | 0.86 | 2.71 | 7840 | 1011 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5W1R | 8751 | 2022-12-15 | 2017-06-04 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.21 | 2.0 | 0.06 | 14.97 | 0.01 | 1.238 | 42.76 | 1.30 | 15.6 | 79.1 | 5.4 | -5.31 | 0.66 | 0.69 | — | 4.4 | 0.003 | 0.89 | 0.0 | 0.04 | 13.29 | 0.01 | 2.079 | 14.33 | 0.00 | 10.0 | 89.2 | 0.7 | -1.81 | 1.16 | 0.66 | 0.69 | — | 25559 | 3563 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UWF | 20922 | 2022-12-11 | 2019-11-05 | 3.08 | 3.26 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.05 | 16.40 | 0.01 | 2.294 | 2.14 | 0.00 | 3.1 | 96.9 | 0.0 | -3.86 | 0.70 | 0.85 | 2.48 | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 15.19 | 0.00 | 2.243 | 6.27 | 0.92 | 3.1 | 96.9 | 0.0 | 0.94 | 0.31 | 0.67 | 0.85 | 2.48 | 3178 | 417 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KTT | 23029 | 2022-12-11 | 2020-11-24 | 4.17 | 4.46 | — | 4.2 | 0.007 | 1.04 | 0.0 | 0.06 | 13.23 | 0.01 | 2.239 | 12.66 | 0.25 | 5.7 | 94.3 | 0.0 | -5.41 | 0.81 | 0.78 | — | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 13.89 | 0.00 | 2.090 | 25.26 | 0.00 | 4.9 | 95.1 | 0.0 | -0.30 | 0.68 | 0.81 | 0.77 | — | 7568 | 994 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JGF | 22325 | 2022-12-11 | 2020-07-19 | 4.69 | 4.81 | — | 4.8 | 0.002 | 0.62 | 0.0 | 0.04 | 13.16 | 0.01 | 2.109 | 26.85 | 0.41 | 4.6 | 95.4 | 0.0 | -0.87 | 0.39 | 0.43 | — | 4.7 | 0.002 | 0.54 | 0.0 | 0.04 | 13.15 | 0.00 | 2.122 | 55.35 | 0.41 | 7.3 | 92.7 | 0.0 | 0.66 | 0.66 | 0.42 | 0.46 | — | 4477 | 532 | 1 | 0 | 0 | 0 | 30 | logfile |