Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5YWD	6853	2022-12-12	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.003	0.78	1.0	0.04	13.43	0.00	1.927	14.38	0.00	4.5	95.5	0.0	1.02	1.84	0.65	0.77	—	8997	1154	1	0	4	0	0	logfile
✔	6KZP	0792	2022-12-12	2019-09-25	3.1	2.67	—	3.1	0.013	1.45	1.0	0.08	14.32	0.01	2.390	10.56	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.002	0.59	0.0	0.04	16.27	0.00	2.267	4.94	0.00	2.4	97.6	0.0	1.47	0.69	0.59	0.83	2.40	8557	1014	1	0	18	0	0	logfile
✔	6S7P	10111	2022-12-12	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.19	0.00	1.992	5.56	0.22	2.0	98.0	0.0	1.12	0.54	0.64	0.85	2.61	9028	1128	1	0	11	0	0	logfile
✔	6HYD	0308	2022-12-12	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	3.9	0.003	0.70	0.0	0.04	14.53	0.00	2.171	5.59	0.24	5.6	94.2	0.2	-1.67	1.74	0.77	0.80	1.55	12168	1543	1	0	31	0	0	logfile
✔	6N9Y	0383	2022-12-11	2018-12-04	4.0	3.80	—	3.7	0.008	1.10	0.0	0.05	10.30	0.01	2.229	5.13	0.42	9.1	90.9	0.0	-4.98	0.38	0.73	—	3.7	0.003	0.69	0.0	0.04	15.57	0.00	2.155	14.28	0.00	8.9	91.1	0.0	-1.04	1.76	0.40	0.78	—	4527	552	1	0	0	0	0	logfile
✔	6JND	9848	2022-12-11	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.006	0.70	0.0	0.05	15.68	0.00	2.212	9.85	0.59	5.8	94.2	0.0	-1.24	0.92	0.48	0.88	2.09	3294	419	1	0	1	0	0	logfile
✔	5LY6	4118	2022-12-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	6C0V	7325	2022-12-12	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.39	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.63	0.0	0.04	16.27	0.00	1.967	7.69	0.64	2.4	97.6	0.0	1.00	1.19	0.58	0.86	2.07	8976	1154	1	0	4	0	0	logfile
✔	5W81	8782	2022-12-12	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.003	0.70	0.0	0.04	16.92	0.00	1.895	8.05	0.30	3.2	96.7	0.1	0.15	1.56	0.57	0.82	1.39	9393	1173	1	0	4	0	0	logfile
✘	6YV1	10940	2022-12-18	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	6KLD	0707	2022-12-12	2019-07-30	3.58	3.66	—	3.6	0.003	0.63	0.0	0.04	14.00	0.00	2.199	8.16	0.00	9.2	90.7	0.1	-0.76	0.74	0.82	2.05	3.6	0.003	0.66	0.0	0.04	15.92	0.00	2.128	9.22	0.28	8.8	91.1	0.1	-0.13	0.43	0.72	0.81	1.47	12794	1617	1	0	2	0	0	logfile
✔	6LLY	0915	2022-12-11	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.26	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.57	0.0	0.04	15.47	0.00	1.330	8.18	1.16	2.9	97.1	0.0	0.06	0.49	0.64	0.80	1.86	7774	1006	1	0	2	0	0	logfile
✔	6LN9	0928	2022-12-11	2019-12-28	3.4	3.61	3.06	3.6	0.003	0.54	0.0	0.04	12.32	0.00	2.075	7.70	0.00	4.1	95.9	0.0	-3.36	0.63	0.73	1.41	3.6	0.003	0.60	0.0	0.04	14.86	0.00	1.358	10.76	0.24	4.5	95.5	0.0	-0.23	0.53	0.62	0.75	1.21	7612	987	1	0	2	0	0	logfile
✔	6KLC	0706	2022-12-12	2019-07-30	3.9	3.97	—	3.9	0.003	0.70	0.0	0.04	13.24	0.00	2.198	11.06	0.64	9.3	90.5	0.2	-3.27	0.73	0.77	1.53	3.9	0.004	0.81	0.0	0.05	16.14	0.00	2.094	13.94	0.56	10.2	89.8	0.1	-0.58	1.54	0.74	0.78	1.11	11210	1436	1	0	1	0	0	logfile
✔	6LN7	0926	2022-12-11	2019-12-28	2.8	2.90	2.71	2.9	0.005	0.65	0.0	0.04	11.73	0.00	2.101	5.77	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.002	0.56	0.0	0.04	16.48	0.00	2.243	6.34	1.39	2.0	98.0	0.0	0.79	0.48	0.69	0.86	2.71	7840	1011	1	0	4	0	0	logfile
✔	5W1R	8751	2022-12-15	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.76	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.89	0.0	0.04	13.29	0.01	2.079	14.33	0.00	10.0	89.2	0.7	-1.81	1.16	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	6UWF	20922	2022-12-11	2019-11-05	3.08	3.26	—	3.3	0.008	1.08	0.0	0.05	16.40	0.01	2.294	2.14	0.00	3.1	96.9	0.0	-3.86	0.70	0.85	2.48	3.3	0.003	0.59	0.0	0.04	15.19	0.00	2.243	6.27	0.92	3.1	96.9	0.0	0.94	0.31	0.67	0.85	2.48	3178	417	1	0	2	0	0	logfile
✔	7KTT	23029	2022-12-11	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.005	0.80	0.0	0.05	13.89	0.00	2.090	25.26	0.00	4.9	95.1	0.0	-0.30	0.68	0.81	0.77	—	7568	994	1	0	0	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile

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