Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KVE	23048	2023-04-22	2020-11-27	3.3	3.69	3.38	3.6	0.005	0.82	2.0	0.05	14.67	0.00	2.204	17.32	0.57	18.2	81.4	0.4	-5.88	0.75	0.73	2.61	3.6	0.003	0.69	0.0	0.05	16.52	0.01	2.162	12.03	0.08	12.6	87.4	0.0	-4.06	1.20	0.75	0.73	2.24	11142	1374	1	0	0	0	0	logfile
✔	7ASK	11895	2023-04-22	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.015	1.14	2.0	0.05	15.52	0.01	1.979	19.61	0.00	18.6	79.9	1.4	-3.48	1.34	0.19	0.61	—	12285	1523	1	0	2	0	0	logfile
✔	7WLi	32584	2023-04-21	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	14.88	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.004	0.70	0.0	0.04	16.29	0.00	2.141	14.63	0.30	6.1	93.9	0.0	0.64	0.51	0.59	0.78	1.73	9493	1135	1	0	21	0	0	logfile
✔	7WLL	32587	2023-04-21	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	8H8B	34541	2023-04-20	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	8A9B	15275	2023-04-20	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.004	0.77	0.0	0.05	17.05	0.00	2.139	20.83	0.43	14.8	84.4	0.7	-2.95	0.53	0.71	0.64	—	6386	809	1	0	0	0	0	logfile
✔	7PTL	13630	2023-04-26	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.90	0.0	0.04	21.29	0.01	1.737	86.57	0.00	0.0	0.0	0.0	—	3.52	0.91	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7PPJ	13581	2023-04-20	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.7	0.005	0.75	0.0	0.05	15.86	0.00	2.112	14.48	0.51	6.4	93.6	0.0	-0.67	0.61	0.72	0.78	1.98	5175	643	1	0	1	0	0	logfile
✔	7WiT	32535	2023-04-20	2022-01-04	3.21	3.87	3.47	3.8	0.007	0.56	0.0	0.04	11.00	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.003	0.52	0.0	0.04	13.70	0.00	2.182	5.35	0.00	2.1	97.9	0.0	1.74	0.65	0.62	0.79	1.65	8109	1133	1	0	2	0	0	logfile
✔	8CXo	27062	2023-04-20	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.78	0.0	0.04	15.98	0.00	2.193	15.37	0.00	4.0	96.0	0.0	1.05	2.10	0.62	0.80	0.56	4392	551	1	0	1	0	0	logfile
✔	6WBX	21600	2023-04-21	2020-03-27	3.5	3.82	3.55	3.7	0.012	1.07	0.0	0.06	13.49	0.01	2.190	4.07	0.11	7.9	92.0	0.1	-5.51	0.77	0.87	3.70	3.7	0.003	0.64	0.0	0.04	13.94	0.00	2.217	6.65	0.00	4.6	95.4	0.0	-1.70	0.41	0.74	0.85	2.73	9170	1264	1	0	2	0	0	logfile
✔	7R76	24292	2023-04-23	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	7oTP	13064	2023-04-28	2021-06-10	3.4	3.69	—	3.6	0.007	0.87	0.0	0.05	14.56	0.01	2.017	14.76	0.16	8.6	91.2	0.2	-1.62	0.80	0.80	1.68	3.6	0.003	0.70	0.0	0.04	15.93	0.00	1.972	10.80	0.28	6.4	93.6	0.0	-0.56	1.37	0.80	0.81	1.25	29039	3636	1	0	23	0	0	logfile
✔	7QKR	14049	2023-04-21	2021-12-18	3.2	3.37	3.13	3.3	0.006	0.83	0.0	0.15	14.47	0.01	2.084	6.53	0.40	1.8	98.2	0.0	0.20	0.73	0.88	2.71	3.3	0.003	0.63	0.0	0.06	15.81	0.00	2.071	4.21	0.10	1.7	98.3	0.0	1.35	0.38	0.73	0.89	1.71	9403	1199	1	0	4	0	0	logfile
✘	7RAV	24387	2023-04-20	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	7JGF	22325	2023-04-20	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	8GUA	34271	2023-04-20	2022-09-11	2.77	2.80	2.65	2.9	0.007	0.69	0.0	0.04	14.82	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.003	0.60	0.0	0.04	17.18	0.00	2.155	13.99	1.53	4.4	95.5	0.1	-0.08	0.43	0.56	0.65	2.11	7017	855	1	0	1	0	0	logfile
✔	7RoZ	24610	2023-04-20	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.004	0.68	0.0	0.04	15.55	0.00	2.050	14.87	0.39	8.3	91.7	0.0	-1.04	1.16	0.85	0.83	2.86	7774	1064	1	0	1	0	0	logfile
✔	7M68	23690	2023-04-26	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.57	0.0	0.04	13.42	0.00	2.019	10.54	0.00	7.4	92.6	0.0	-0.76	1.42	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile

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