Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A9B	15275	2023-04-20	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.004	0.77	0.0	0.05	17.05	0.00	2.139	20.83	0.43	14.8	84.4	0.7	-2.95	0.53	0.71	0.64	—	6386	809	1	0	0	0	0	logfile
✔	6JXA	9892	2023-04-23	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	7oTW	13068	2023-04-28	2021-06-10	2.99	3.85	—	3.2	0.009	0.97	0.0	0.05	14.24	0.01	1.672	14.73	0.28	10.0	89.9	0.2	-2.30	0.80	0.71	1.78	3.2	0.003	0.77	0.0	0.04	15.61	0.00	2.155	11.38	0.81	6.7	93.2	0.1	-0.23	1.42	0.89	0.82	1.23	29038	3636	1	0	21	0	0	logfile
✔	8GUA	34271	2023-04-20	2022-09-11	2.77	2.80	2.65	2.9	0.007	0.69	0.0	0.04	14.82	0.01	2.224	10.99	0.13	3.8	95.9	0.2	-0.79	0.53	0.61	2.00	2.9	0.003	0.60	0.0	0.04	17.18	0.00	2.155	13.99	1.53	4.4	95.5	0.1	-0.08	0.43	0.56	0.65	2.11	7017	855	1	0	1	0	0	logfile
✔	7UVT	26816	2023-04-22	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7SK2	25170	2023-04-20	2021-10-19	3.82	4.03	—	3.9	0.007	1.22	0.0	0.06	13.60	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.83	0.0	0.04	16.15	0.00	2.138	18.38	0.94	5.3	94.7	0.0	-0.55	0.53	0.50	0.69	1.30	4177	532	1	0	1	0	0	logfile
✔	7WLJ	32585	2023-04-21	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	14.59	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.003	0.88	0.0	0.05	16.21	0.00	2.150	16.14	0.20	6.6	93.4	0.0	-0.06	0.67	0.60	0.80	0.94	9450	1135	1	0	15	0	0	logfile
✔	7PPJ	13581	2023-04-20	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.25	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	3.7	0.005	0.75	0.0	0.05	15.86	0.00	2.112	14.48	0.51	6.4	93.6	0.0	-0.67	0.61	0.72	0.78	1.98	5175	643	1	0	1	0	0	logfile
✔	8A06	15051	2023-04-19	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.004	0.65	0.0	0.05	17.25	0.00	2.290	6.79	0.00	4.8	95.2	0.0	-1.23	0.40	0.27	0.80	—	1185	147	1	0	0	0	0	logfile
✔	7KTV	23031	2023-04-20	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.77	0.0	0.04	13.13	0.00	2.155	19.49	0.12	3.8	96.2	0.0	-0.43	0.90	0.79	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7E1A	30938	2023-04-21	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	7WLL	32587	2023-04-21	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	15.09	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.9	0.003	0.82	0.0	0.06	16.22	0.00	2.190	11.34	0.30	5.2	94.8	0.0	0.66	1.18	0.59	0.80	1.18	9540	1135	1	0	21	0	0	logfile
✔	6XMS	22262	2023-04-20	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.004	0.60	0.0	0.04	14.23	0.00	1.797	5.19	0.11	4.7	95.3	0.0	0.03	0.36	0.74	0.89	1.89	8389	1091	1	0	2	0	0	logfile
✔	8DEP	27394	2023-04-19	2022-06-21	3.6	4.01	3.65	3.8	0.008	0.76	0.0	0.07	13.59	0.01	2.197	5.44	0.65	0.5	99.5	0.0	3.03	0.47	0.78	1.93	3.9	0.003	0.62	0.0	0.03	16.80	0.00	2.214	7.84	0.32	1.5	98.5	0.0	2.16	0.65	0.46	0.77	1.68	3223	398	1	0	4	0	0	logfile
✔	6LR0	31583	2023-04-21	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✘	7oE7	12861	2023-04-22	2021-05-01	3.73	3.95	3.97	3.7	0.002	0.53	0.0	0.04	14.33	0.00	2.084	3.86	0.00	6.8	93.2	0.0	-1.48	0.79	0.64	0.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11116	1382	1	0	2	0	0	logfile
✔	7N78	24223	2023-04-20	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.96	0.0	0.06	12.83	0.01	1.930	8.14	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.79	0.00	2.008	6.24	1.09	1.9	98.1	0.0	2.24	0.43	0.64	0.76	1.67	7669	1030	1	0	11	3	0	logfile
✔	7W7W	32350	2023-04-20	2021-12-06	3.2	2.98	3.22	3.2	0.003	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.002	0.84	0.0	0.04	15.74	0.00	1.537	8.97	0.23	3.9	96.1	0.0	0.72	0.38	0.58	0.75	1.99	7870	1018	1	0	2	0	0	logfile
✔	7oTM	13062	2023-04-28	2021-06-10	3.33	3.97	—	3.7	0.008	0.93	1.0	0.05	14.51	0.01	2.071	16.56	0.28	9.2	90.6	0.2	-1.79	0.82	0.77	1.32	3.7	0.003	0.70	0.0	0.04	15.94	0.00	2.146	11.32	0.16	6.4	93.6	0.0	-0.53	1.41	0.84	0.80	0.80	29040	3636	1	0	21	0	0	logfile
✔	7oTV	13067	2023-04-28	2021-06-10	3.24	3.53	—	3.4	0.012	0.79	0.0	0.10	14.43	0.01	2.090	10.98	0.34	8.5	91.4	0.1	-1.18	0.71	0.65	0.82	3.4	0.003	0.73	0.0	0.04	16.62	0.00	2.121	10.10	0.31	6.1	93.9	0.0	-0.41	0.90	0.77	0.77	0.92	29041	3636	1	0	21	0	0	logfile

• ← previous
• Page 6 of 372
• next →