Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8B0K	15786	2023-11-14	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.64	0.00	2.240	7.92	2.76	3.5	96.5	0.0	0.93	0.88	0.58	0.85	4.37	3830	492	1	0	0	0	0	logfile
✔	7o3D	12704	2023-11-15	2021-04-01	3.71	4.15	3.79	4.0	0.003	0.77	0.0	0.05	13.17	0.01	2.146	6.21	0.00	4.2	95.8	0.0	-0.61	0.76	0.72	1.16	3.9	0.002	0.55	0.0	0.04	15.37	0.00	2.019	8.57	0.31	4.9	95.1	0.0	0.18	0.47	0.76	0.73	1.29	11458	709	1	0	0	0	5694	logfile
✔	6KWX	0780	2023-11-16	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.17	13.00	0.01	1.627	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	4.0	0.004	0.88	0.0	0.05	17.29	0.00	2.112	16.75	0.31	7.3	92.7	0.1	-0.73	1.13	0.68	0.80	1.07	14227	1751	1	0	2	0	0	logfile
✔	7oTi	13060	2023-11-14	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.86	0.0	0.04	14.40	0.00	2.119	20.52	0.00	7.2	92.3	0.5	-1.27	1.77	0.52	0.51	—	9171	1182	1	0	0	0	0	logfile
✔	6LR0	31583	2023-11-14	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.43	0.00	2.162	9.47	0.39	6.5	93.5	0.0	-3.41	0.84	0.64	0.75	0.73	9576	1230	1	0	0	0	0	logfile
✔	8HD7	34671	2023-11-14	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	14.67	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.008	0.83	0.0	0.05	16.67	0.01	1.800	17.97	0.00	0.0	0.0	0.0	—	2.13	0.90	0.82	—	8983	0	1	419	28	0	0	logfile
✔	7DV5	30870	2023-11-14	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✔	7Y7V	33671	2023-11-13	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.30	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.58	0.0	0.04	15.87	0.00	2.209	4.91	3.54	2.5	97.5	0.0	1.86	0.36	0.69	0.86	3.98	4341	532	1	0	4	58	0	logfile
✔	7E1A	30938	2023-11-14	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.29	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.75	0.0	0.04	15.83	0.00	2.156	10.94	0.81	6.8	93.2	0.0	-3.36	1.35	0.63	0.78	1.26	9284	1189	1	0	1	0	0	logfile
✔	6JNC	9847	2023-11-13	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.004	0.61	0.0	0.05	16.03	0.00	2.240	5.61	0.59	3.8	96.2	0.0	-1.17	1.78	0.52	0.88	2.42	3294	419	1	0	1	0	0	logfile
✘	7RAV	24387	2023-11-13	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.84	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6215	773	1	0	1	0	0	logfile
✔	8ET9	28589	2023-11-14	2022-10-16	3.61	3.97	3.84	3.9	0.005	0.61	0.0	0.04	10.84	0.01	2.058	8.46	0.52	1.8	98.2	0.0	1.38	0.46	0.67	2.05	3.9	0.003	0.58	0.0	0.03	14.29	0.00	1.959	10.28	0.26	3.7	96.3	0.0	0.86	4.56	0.47	0.68	2.12	7685	517	1	0	1	0	3796	logfile
✔	7N98	24252	2023-11-13	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.68	0.0	0.04	16.81	0.01	2.245	8.30	1.07	7.6	92.4	0.0	0.09	0.51	0.50	0.81	1.11	3625	473	1	0	0	0	0	logfile
✔	7R76	24292	2023-11-16	2021-06-24	3.2	3.43	—	3.3	0.008	1.02	1.0	0.06	14.99	0.01	1.995	12.70	0.38	9.0	91.0	0.0	-2.71	0.74	0.79	2.24	3.3	0.004	0.67	0.0	0.04	16.55	0.00	1.971	11.52	0.13	6.5	93.5	0.0	-1.14	0.42	0.74	0.80	2.12	14500	1834	1	0	5	0	0	logfile
✔	8B0o	15790	2023-11-14	2022-09-07	3.02	3.35	3.12	3.3	0.009	0.70	0.0	0.04	12.96	0.02	2.255	6.96	0.00	6.0	94.0	0.0	-0.78	0.58	0.84	4.68	3.3	0.003	0.61	0.0	0.04	15.92	0.00	2.193	9.37	0.25	6.3	93.7	0.0	-0.51	0.90	0.57	0.85	3.74	3995	506	1	0	1	0	0	logfile
✔	7XD7	33138	2023-11-14	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	15.11	0.00	1.866	7.88	0.00	0.0	0.0	0.0	—	2.19	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	8B0M	15788	2023-11-14	2022-09-07	3.01	3.39	3.03	3.3	0.003	0.66	0.0	0.04	10.77	0.00	2.258	5.92	0.48	5.7	94.3	0.0	-0.18	0.57	0.84	5.07	3.3	0.003	0.56	0.0	0.04	13.28	0.00	2.239	6.42	0.00	5.9	94.1	0.0	0.50	1.70	0.58	0.86	4.35	4015	508	1	0	1	0	0	logfile
✔	8FEi	29028	2023-11-13	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.91	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.60	0.0	0.04	14.75	0.00	2.007	9.69	0.54	3.1	96.9	0.0	0.24	1.08	0.91	0.85	2.80	5189	674	1	0	2	0	0	logfile
✔	7oTY	13069	2023-11-20	2021-06-10	2.96	3.20	—	3.1	0.013	1.08	1.0	0.06	14.42	0.01	1.177	19.52	0.75	10.1	89.7	0.2	-2.22	0.75	0.78	1.93	3.2	0.003	0.71	0.0	0.04	16.53	0.00	2.173	11.20	1.28	6.9	93.0	0.0	-0.31	0.50	0.76	0.79	1.47	29034	3636	1	0	21	0	0	logfile
✘	7FBS	31519	2023-11-14	2021-07-12	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9274	1118	1	0	17	0	0	logfile

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