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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8A9B | 15275 | 2023-04-20 | 2022-06-28 | 4.0 | 4.28 | 3.95 | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 14.89 | 0.00 | 2.113 | 20.52 | 0.00 | 14.8 | 84.2 | 1.0 | -3.17 | 0.67 | 0.58 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.05 | 17.05 | 0.00 | 2.139 | 20.83 | 0.43 | 14.8 | 84.4 | 0.7 | -2.95 | 0.53 | 0.71 | 0.64 | — | 6386 | 809 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXA | 9892 | 2023-04-23 | 2019-04-23 | 4.3 | 4.65 | — | 4.2 | 0.017 | 1.81 | 3.0 | 0.10 | 9.08 | 0.01 | 1.926 | 29.72 | 2.04 | 12.2 | 79.3 | 8.5 | -2.72 | 0.49 | 0.42 | — | 4.2 | 0.005 | 1.04 | 0.0 | 0.05 | 11.62 | 0.01 | 2.085 | 25.04 | 0.00 | 17.4 | 79.8 | 2.8 | -2.41 | 0.95 | 0.65 | 0.59 | — | 14100 | 2244 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTW | 13068 | 2023-04-28 | 2021-06-10 | 2.99 | 3.85 | — | 3.2 | 0.009 | 0.97 | 0.0 | 0.05 | 14.24 | 0.01 | 1.672 | 14.73 | 0.28 | 10.0 | 89.9 | 0.2 | -2.30 | 0.80 | 0.71 | 1.78 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 15.61 | 0.00 | 2.155 | 11.38 | 0.81 | 6.7 | 93.2 | 0.1 | -0.23 | 1.42 | 0.89 | 0.82 | 1.23 | 29038 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 8GUA | 34271 | 2023-04-20 | 2022-09-11 | 2.77 | 2.80 | 2.65 | 2.9 | 0.007 | 0.69 | 0.0 | 0.04 | 14.82 | 0.01 | 2.224 | 10.99 | 0.13 | 3.8 | 95.9 | 0.2 | -0.79 | 0.53 | 0.61 | 2.00 | 2.9 | 0.003 | 0.60 | 0.0 | 0.04 | 17.18 | 0.00 | 2.155 | 13.99 | 1.53 | 4.4 | 95.5 | 0.1 | -0.08 | 0.43 | 0.56 | 0.65 | 2.11 | 7017 | 855 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7UVT | 26816 | 2023-04-22 | 2022-05-02 | 3.9 | 4.17 | 4.00 | 4.1 | 0.001 | 0.41 | 0.0 | 0.02 | 16.13 | 0.00 | 1.897 | 6.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.76 | 0.74 | — | 4.1 | 0.006 | 0.70 | 0.0 | 0.04 | 17.94 | 0.01 | 1.892 | 21.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.48 | 0.77 | 0.76 | — | 12409 | 0 | 1 | 386 | 0 | 0 | 4149 | logfile |
✔ | 7SK2 | 25170 | 2023-04-20 | 2021-10-19 | 3.82 | 4.03 | — | 3.9 | 0.007 | 1.22 | 0.0 | 0.06 | 13.60 | 0.01 | 2.235 | 8.03 | 0.00 | 4.7 | 95.3 | 0.0 | -2.59 | 0.49 | 0.69 | 1.11 | 3.9 | 0.003 | 0.83 | 0.0 | 0.04 | 16.15 | 0.00 | 2.138 | 18.38 | 0.94 | 5.3 | 94.7 | 0.0 | -0.55 | 0.53 | 0.50 | 0.69 | 1.30 | 4177 | 532 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WLJ | 32585 | 2023-04-21 | 2022-01-13 | 3.9 | 4.18 | — | 4.1 | 0.009 | 1.01 | 0.0 | 0.14 | 14.59 | 0.00 | 1.912 | 18.90 | 0.10 | 6.7 | 93.3 | 0.0 | 0.03 | 0.59 | 0.80 | 1.62 | 4.1 | 0.003 | 0.88 | 0.0 | 0.05 | 16.21 | 0.00 | 2.150 | 16.14 | 0.20 | 6.6 | 93.4 | 0.0 | -0.06 | 0.67 | 0.60 | 0.80 | 0.94 | 9450 | 1135 | 1 | 0 | 15 | 0 | 0 | logfile |
✔ | 7PPJ | 13581 | 2023-04-20 | 2021-09-14 | 3.44 | 3.68 | 3.46 | 3.7 | 0.005 | 0.72 | 0.0 | 0.05 | 14.04 | 0.00 | 2.245 | 15.25 | 1.20 | 6.8 | 92.9 | 0.3 | -3.05 | 0.72 | 0.75 | 2.21 | 3.7 | 0.005 | 0.75 | 0.0 | 0.05 | 15.86 | 0.00 | 2.112 | 14.48 | 0.51 | 6.4 | 93.6 | 0.0 | -0.67 | 0.61 | 0.72 | 0.78 | 1.98 | 5175 | 643 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8A06 | 15051 | 2023-04-19 | 2022-05-26 | 4.0 | 3.63 | 3.78 | 3.8 | 0.003 | 0.56 | 0.0 | 0.05 | 13.75 | 0.00 | 2.201 | 6.79 | 0.73 | 2.8 | 97.2 | 0.0 | -0.86 | 0.27 | 0.78 | — | 3.7 | 0.004 | 0.65 | 0.0 | 0.05 | 17.25 | 0.00 | 2.290 | 6.79 | 0.00 | 4.8 | 95.2 | 0.0 | -1.23 | 0.40 | 0.27 | 0.80 | — | 1185 | 147 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KTV | 23031 | 2023-04-20 | 2020-11-24 | 4.5 | 4.83 | — | 4.5 | 0.006 | 1.06 | 0.0 | 0.06 | 12.50 | 0.01 | 2.221 | 17.73 | 0.12 | 6.5 | 93.5 | 0.0 | -5.20 | 0.80 | 0.79 | — | 6.7 | 0.003 | 0.77 | 0.0 | 0.04 | 13.13 | 0.00 | 2.155 | 19.49 | 0.12 | 3.8 | 96.2 | 0.0 | -0.43 | 0.90 | 0.79 | 0.76 | — | 7577 | 995 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E1A | 30938 | 2023-04-21 | 2021-02-01 | 3.66 | 4.00 | — | 3.9 | 0.012 | 1.39 | 0.0 | 0.07 | 13.29 | 0.01 | 2.233 | 7.56 | 0.81 | 11.6 | 88.3 | 0.1 | -6.43 | 0.63 | 0.78 | 1.89 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.83 | 0.00 | 2.156 | 10.94 | 0.81 | 6.8 | 93.2 | 0.0 | -3.36 | 1.35 | 0.63 | 0.78 | 1.26 | 9284 | 1189 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WLL | 32587 | 2023-04-21 | 2022-01-13 | 3.6 | 3.89 | — | 3.8 | 0.012 | 1.19 | 2.0 | 0.08 | 15.09 | 0.00 | 2.026 | 13.97 | 0.50 | 7.3 | 92.6 | 0.1 | -0.42 | 0.60 | 0.81 | 1.99 | 3.9 | 0.003 | 0.82 | 0.0 | 0.06 | 16.22 | 0.00 | 2.190 | 11.34 | 0.30 | 5.2 | 94.8 | 0.0 | 0.66 | 1.18 | 0.59 | 0.80 | 1.18 | 9540 | 1135 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 6XMS | 22262 | 2023-04-20 | 2020-06-30 | 3.4 | 4.03 | 3.50 | 3.8 | 0.006 | 1.18 | 0.0 | 0.04 | 12.68 | 0.00 | 1.862 | 6.08 | 0.00 | 4.6 | 95.4 | 0.0 | -2.39 | 0.74 | 0.87 | 2.45 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.23 | 0.00 | 1.797 | 5.19 | 0.11 | 4.7 | 95.3 | 0.0 | 0.03 | 0.36 | 0.74 | 0.89 | 1.89 | 8389 | 1091 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DEP | 27394 | 2023-04-19 | 2022-06-21 | 3.6 | 4.01 | 3.65 | 3.8 | 0.008 | 0.76 | 0.0 | 0.07 | 13.59 | 0.01 | 2.197 | 5.44 | 0.65 | 0.5 | 99.5 | 0.0 | 3.03 | 0.47 | 0.78 | 1.93 | 3.9 | 0.003 | 0.62 | 0.0 | 0.03 | 16.80 | 0.00 | 2.214 | 7.84 | 0.32 | 1.5 | 98.5 | 0.0 | 2.16 | 0.65 | 0.46 | 0.77 | 1.68 | 3223 | 398 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6LR0 | 31583 | 2023-04-21 | 2020-01-15 | 3.5 | 3.87 | — | 3.8 | 0.011 | 1.38 | 0.0 | 0.07 | 13.07 | 0.01 | 2.291 | 5.77 | 0.88 | 11.0 | 88.9 | 0.1 | -6.35 | 0.66 | 0.78 | 1.71 | 3.8 | 0.003 | 0.76 | 0.0 | 0.04 | 15.43 | 0.00 | 2.162 | 9.47 | 0.39 | 6.5 | 93.5 | 0.0 | -3.41 | 0.84 | 0.64 | 0.75 | 0.73 | 9576 | 1230 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oE7 | 12861 | 2023-04-22 | 2021-05-01 | 3.73 | 3.95 | 3.97 | 3.7 | 0.002 | 0.53 | 0.0 | 0.04 | 14.33 | 0.00 | 2.084 | 3.86 | 0.00 | 6.8 | 93.2 | 0.0 | -1.48 | 0.79 | 0.64 | 0.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1382 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7N78 | 24223 | 2023-04-20 | 2021-06-09 | 3.0 | 3.81 | 3.01 | 3.5 | 0.010 | 0.96 | 0.0 | 0.06 | 12.83 | 0.01 | 1.930 | 8.14 | 0.00 | 2.6 | 97.4 | 0.0 | -1.34 | 0.71 | 0.83 | 3.03 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.79 | 0.00 | 2.008 | 6.24 | 1.09 | 1.9 | 98.1 | 0.0 | 2.24 | 0.43 | 0.64 | 0.76 | 1.67 | 7669 | 1030 | 1 | 0 | 11 | 3 | 0 | logfile |
✔ | 7W7W | 32350 | 2023-04-20 | 2021-12-06 | 3.2 | 2.98 | 3.22 | 3.2 | 0.003 | 1.16 | 0.0 | 0.04 | 13.44 | 0.00 | 2.051 | 8.21 | 0.00 | 2.9 | 97.1 | 0.0 | 0.82 | 0.59 | 0.74 | 2.05 | 3.2 | 0.002 | 0.84 | 0.0 | 0.04 | 15.74 | 0.00 | 1.537 | 8.97 | 0.23 | 3.9 | 96.1 | 0.0 | 0.72 | 0.38 | 0.58 | 0.75 | 1.99 | 7870 | 1018 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7oTM | 13062 | 2023-04-28 | 2021-06-10 | 3.33 | 3.97 | — | 3.7 | 0.008 | 0.93 | 1.0 | 0.05 | 14.51 | 0.01 | 2.071 | 16.56 | 0.28 | 9.2 | 90.6 | 0.2 | -1.79 | 0.82 | 0.77 | 1.32 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 15.94 | 0.00 | 2.146 | 11.32 | 0.16 | 6.4 | 93.6 | 0.0 | -0.53 | 1.41 | 0.84 | 0.80 | 0.80 | 29040 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 7oTV | 13067 | 2023-04-28 | 2021-06-10 | 3.24 | 3.53 | — | 3.4 | 0.012 | 0.79 | 0.0 | 0.10 | 14.43 | 0.01 | 2.090 | 10.98 | 0.34 | 8.5 | 91.4 | 0.1 | -1.18 | 0.71 | 0.65 | 0.82 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 16.62 | 0.00 | 2.121 | 10.10 | 0.31 | 6.1 | 93.9 | 0.0 | -0.41 | 0.90 | 0.77 | 0.77 | 0.92 | 29041 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |