Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XMS	22262	2022-12-12	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.003	0.54	0.0	0.04	14.17	0.00	1.860	5.07	0.33	2.9	97.1	0.0	0.31	0.37	0.74	0.88	1.83	8389	1091	1	0	2	0	0	logfile
✔	7N75	24220	2022-12-11	2021-06-09	2.9	3.58	2.95	3.3	0.007	0.69	0.0	0.05	12.89	0.01	2.157	7.98	0.00	3.0	97.0	0.0	0.75	0.69	0.82	3.17	3.3	0.003	0.59	0.0	0.04	14.33	0.00	2.210	7.35	0.85	2.2	97.8	0.0	2.51	0.36	0.66	0.81	2.09	7381	1036	1	0	0	3	0	logfile
✔	7N72	24217	2022-12-11	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.31	0.0	0.06	13.12	0.01	1.971	6.25	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.86	0.0	0.04	14.32	0.00	1.667	6.06	0.94	1.8	98.2	0.0	1.77	0.43	0.66	0.82	2.61	7705	1030	1	0	11	5	0	logfile
✔	7N73	24218	2022-12-11	2021-06-09	2.9	3.46	2.99	3.3	0.006	1.27	0.0	0.06	13.02	0.00	1.850	7.83	0.00	2.6	97.4	0.0	1.31	0.71	0.85	2.86	3.3	0.003	0.84	0.0	0.04	14.36	0.00	2.053	5.87	0.84	2.2	97.8	0.0	1.76	0.32	0.69	0.84	2.56	7866	1036	1	0	6	3	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7AWA	11928	2022-12-11	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.53	0.0	0.04	14.89	0.00	2.160	6.39	0.00	2.8	97.2	0.0	-0.31	1.17	0.54	0.80	1.47	5310	328	1	0	0	0	2703	logfile
✔	7ADJ	11727	2022-12-12	2020-09-15	2.8	3.02	2.79	3.0	0.014	1.99	4.0	0.11	14.68	0.01	2.562	0.51	0.18	6.9	93.1	0.0	-2.18	0.34	0.70	3.50	3.0	0.003	0.62	0.0	0.04	16.97	0.00	2.161	6.49	2.21	6.2	93.8	0.0	-1.01	2.91	0.38	0.75	2.95	9710	613	1	0	0	0	4790	logfile
✔	6ZH4	11213	2022-12-16	2020-06-20	3.62	4.39	3.75	4.0	0.005	0.69	0.0	0.04	14.48	0.00	2.199	14.46	0.03	7.6	92.4	0.0	-0.76	0.89	0.87	1.88	4.0	0.003	0.64	0.0	0.04	15.80	0.00	2.124	11.69	0.09	5.8	94.2	0.0	0.56	0.37	0.88	0.85	1.47	29352	3670	1	0	28	0	0	logfile
✔	7ASK	11895	2022-12-12	2020-10-27	4.3	4.39	—	4.3	0.028	2.98	47.0	0.22	18.83	0.02	0.766	14.33	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.32	2.0	0.05	15.46	0.01	2.042	17.93	0.00	18.5	80.0	1.5	-3.37	1.32	0.19	0.60	—	12285	1523	1	0	2	0	0	logfile
✔	7B52	12017	2022-12-13	2020-12-03	3.8	4.98	—	3.9	0.004	0.84	0.0	0.04	14.20	0.00	2.035	24.55	0.07	16.4	83.4	0.2	-2.23	0.83	0.84	0.97	3.9	0.003	0.72	0.0	0.04	15.12	0.00	2.115	17.05	0.14	13.0	86.9	0.1	-1.29	0.92	0.83	0.83	0.77	13186	1638	1	0	0	0	0	logfile
✔	7ABK	11698	2022-12-11	2020-09-07	3.6	4.10	3.49	3.9	0.004	0.66	0.0	0.04	16.30	0.00	2.315	5.67	1.23	1.5	98.5	0.0	0.91	0.28	0.87	1.10	3.9	0.003	0.66	0.0	0.03	19.91	0.00	2.304	7.87	0.00	2.1	97.9	0.0	5.18	1.55	0.28	0.85	1.35	1574	196	1	0	0	0	0	logfile
✔	7N78	24223	2022-12-11	2021-06-09	3.0	3.81	3.01	3.5	0.010	0.91	0.0	0.06	12.87	0.01	1.930	8.28	0.00	2.6	97.4	0.0	-1.34	0.71	0.83	3.03	3.5	0.003	0.61	0.0	0.04	13.63	0.00	2.000	6.44	1.09	2.1	97.9	0.0	1.64	0.44	0.64	0.77	1.80	7669	1030	1	0	11	3	0	logfile
✔	7N98	24252	2022-12-11	2021-06-17	3.5	3.78	3.89	4.0	0.004	0.72	0.0	0.05	13.69	0.01	2.217	11.62	0.27	8.5	91.5	0.0	-1.56	0.51	0.82	3.02	4.0	0.003	0.69	0.0	0.04	16.85	0.01	2.224	8.57	0.54	8.3	91.7	0.0	0.01	0.50	0.50	0.81	1.07	3625	473	1	0	0	0	0	logfile
✔	7N70	24214	2022-12-11	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.71	0.0	0.05	13.16	0.01	2.109	7.99	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.57	0.0	0.04	15.09	0.00	1.927	7.37	1.73	1.7	98.3	0.0	1.01	0.45	0.63	0.77	2.03	7953	1032	1	0	4	0	0	logfile
✔	7NUR	12600	2022-12-12	2021-03-13	3.125	3.29	—	3.3	0.007	0.77	0.0	0.05	14.31	0.01	2.174	5.26	0.11	7.7	92.0	0.3	-4.11	0.77	0.87	3.09	3.3	0.004	0.65	0.0	0.04	15.97	0.00	2.226	4.65	0.57	6.4	93.5	0.1	-0.35	1.29	0.74	0.87	2.31	8245	1044	1	0	0	0	0	logfile
✔	7N6B	24206	2022-12-11	2021-06-08	2.66	2.57	—	2.6	0.006	0.75	0.0	0.05	16.31	0.01	2.147	8.98	0.00	3.3	96.7	0.0	0.66	0.53	0.72	2.30	2.6	0.003	0.66	0.0	0.04	17.10	0.00	2.129	10.23	1.77	3.5	96.5	0.0	1.25	0.40	0.54	0.74	1.79	5942	757	1	0	2	0	0	logfile
✔	6ZFP	11185	2022-12-16	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.82	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.61	0.00	2.206	7.45	0.19	5.9	94.0	0.1	0.30	0.77	0.80	0.77	1.30	29385	3676	1	0	28	0	0	logfile
✔	6ZH2	11211	2022-12-16	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.63	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.003	0.68	0.0	0.04	15.89	0.00	2.138	14.05	0.16	6.3	93.7	0.0	0.36	1.50	0.87	0.86	1.20	29313	3676	1	0	28	0	0	logfile
✔	7M5V	23683	2022-12-13	2021-03-24	2.9	3.76	—	3.2	0.007	1.06	1.0	0.24	14.20	0.00	2.059	4.25	0.12	7.3	92.7	0.0	0.36	0.71	0.80	2.14	3.2	0.002	0.52	0.0	0.04	14.27	0.00	1.944	7.96	0.83	5.9	94.1	0.0	1.13	0.96	0.70	0.84	2.36	16295	1046	1	0	24	6	7985	logfile
✔	7M69	23691	2022-12-14	2021-03-25	3.42	4.12	4.11	4.1	0.006	0.87	0.0	0.04	13.25	0.01	2.304	0.82	1.29	5.1	94.9	0.0	-0.08	0.52	0.70	1.11	4.1	0.003	0.62	0.0	0.04	15.88	0.00	1.936	12.23	0.69	6.4	93.6	0.0	0.79	1.08	0.53	0.73	0.89	21781	1390	1	0	0	0	10898	logfile

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