Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6LQA	0942	2023-04-21	2020-01-13	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9387	1151	1	0	10	0	0	logfile
✔	6X2Z	22014	2023-04-19	2020-05-21	3.03	3.18	—	3.2	0.005	0.84	0.0	0.05	15.51	0.01	2.131	6.52	0.00	3.6	96.4	0.0	-5.65	0.44	0.86	2.63	3.2	0.003	0.67	0.0	0.04	16.15	0.00	2.195	9.40	0.28	2.9	97.1	0.0	0.74	0.96	0.44	0.87	2.26	3205	420	1	0	3	0	0	logfile
✔	7TX7	26156	2023-04-19	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✔	7VLT	32026	2023-04-21	2021-10-05	3.1	3.37	3.11	3.4	0.004	0.60	0.0	0.04	12.71	0.00	1.963	3.24	2.19	1.9	98.1	0.0	0.12	0.67	0.83	2.64	3.4	0.003	0.55	0.0	0.04	15.16	0.00	2.010	8.03	0.00	1.3	98.7	0.0	2.53	1.87	0.66	0.83	2.02	9024	1145	1	0	6	0	0	logfile
✔	7JGE	22324	2023-04-25	2020-07-19	4.0	4.23	—	4.2	0.002	0.44	0.0	0.05	13.35	0.00	2.115	14.01	0.00	3.7	96.3	0.0	1.11	0.54	0.54	—	4.2	0.003	0.55	0.0	0.06	15.53	0.00	2.042	17.29	0.08	7.3	92.7	0.0	0.23	0.64	0.60	0.65	—	20315	1437	1	0	0	0	8508	logfile
✔	7DTC	30850	2023-04-21	2021-01-04	3.3	3.73	—	3.6	0.004	0.70	0.0	0.04	14.15	0.00	2.201	12.28	0.49	7.9	91.6	0.4	-3.34	0.52	0.80	1.81	3.5	0.003	0.77	0.0	0.04	15.99	0.00	2.219	11.11	0.59	8.1	91.8	0.1	0.24	1.35	0.54	0.82	1.38	9363	1151	1	0	9	0	0	logfile
✔	6XMT	22263	2023-04-20	2020-06-30	3.3	3.96	3.42	3.7	0.004	0.61	0.0	0.04	12.44	0.00	1.814	7.30	0.00	4.5	95.5	0.0	-2.38	0.72	0.82	2.61	3.8	0.002	0.54	0.0	0.04	14.21	0.00	2.054	5.85	0.11	3.4	96.6	0.0	0.58	0.42	0.72	0.85	1.95	8324	1092	1	0	2	0	0	logfile
✔	7PTQ	13633	2023-04-24	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.67	0.0	0.04	19.44	0.00	1.852	43.48	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7XSN	33428	2023-04-20	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.61	0.0	0.03	16.36	0.00	2.111	20.82	0.00	0.0	0.0	0.0	—	0.30	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	5M5H	4155	2023-04-19	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.89	0.0	0.05	12.67	0.01	2.275	23.84	0.00	8.7	91.3	0.0	-1.45	2.20	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	6XMQ	22261	2023-04-20	2020-06-30	3.7	4.26	3.79	4.0	0.006	0.66	0.0	0.04	12.80	0.00	1.660	6.11	0.00	3.7	96.3	0.0	-1.63	0.72	0.85	1.50	4.0	0.004	0.60	0.0	0.04	14.86	0.00	1.920	7.07	0.22	3.9	96.1	0.0	0.66	1.28	0.72	0.86	1.32	8362	1085	1	0	2	0	0	logfile
✔	7W02	32234	2023-04-22	2021-11-17	3.3	3.44	—	3.4	0.007	0.89	0.0	0.05	14.65	0.00	1.892	7.36	0.23	10.9	89.1	0.1	-3.18	0.68	0.87	2.65	3.4	0.003	0.64	0.0	0.04	15.86	0.00	1.978	5.78	0.16	7.5	92.4	0.1	-1.36	0.32	0.68	0.88	2.02	12326	1566	1	0	6	0	0	logfile
✔	7XSL	33426	2023-04-22	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.006	0.70	0.0	0.04	18.31	0.01	1.810	33.53	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XSM	33427	2023-04-22	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	6XMP	22260	2023-04-21	2020-06-30	3.5	4.29	3.63	4.0	0.007	0.78	0.0	0.04	13.27	0.00	2.192	6.56	0.00	2.9	97.1	0.0	-1.66	0.72	0.84	1.55	4.0	0.003	0.53	0.0	0.04	14.26	0.00	2.173	6.27	0.00	3.2	96.8	0.0	1.22	0.33	0.71	0.85	1.45	8545	1086	1	0	12	0	0	logfile
✔	6ZPG	11338	2023-04-20	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	7.0	0.003	0.83	0.0	0.04	15.58	0.00	2.236	19.15	0.00	6.1	93.9	0.0	0.38	1.97	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	6XoU	22280	2023-04-20	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.85	0.0	0.04	14.98	0.00	2.141	12.38	0.70	2.9	97.1	0.0	1.17	1.78	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	7RYQ	24745	2023-04-20	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.003	0.76	0.0	0.04	14.17	0.01	2.162	16.62	0.00	7.6	92.4	0.0	-0.37	1.23	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	7JGG	22326	2023-04-20	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	7UV0	26808	2023-04-20	2022-04-29	3.1	3.20	3.07	3.2	0.005	0.61	0.0	0.04	13.07	0.00	2.160	5.85	0.51	7.7	92.3	0.0	0.23	0.59	0.79	2.75	3.3	0.003	0.60	0.0	0.04	14.96	0.00	2.312	7.67	0.25	5.9	94.1	0.0	1.16	1.14	0.54	0.77	1.59	3784	501	1	0	4	0	0	logfile

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