Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DRQ	27681	2023-07-03	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.81	0.0	0.05	13.41	0.00	2.156	19.67	0.00	8.1	91.9	0.0	-3.21	1.78	0.41	0.56	—	3321	407	1	0	0	0	0	logfile
✔	7S5V	24840	2023-07-06	2021-09-12	3.3	3.61	—	3.5	0.006	0.88	0.0	0.05	15.45	0.01	2.093	5.38	4.27	5.1	94.9	0.0	-4.70	0.72	0.85	2.01	3.5	0.003	0.59	0.0	0.04	15.79	0.00	1.904	7.82	0.34	4.5	95.5	0.0	-0.42	0.39	0.69	0.85	1.66	10964	1397	1	0	4	0	0	logfile
✘	5A7U	3079	2023-07-03	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	7ZKB	14761	2023-07-05	2022-04-12	4.7	4.80	4.47	4.7	0.013	1.10	2.0	0.06	14.01	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.71	0.0	0.04	14.48	0.00	2.134	14.95	0.00	6.4	93.6	0.0	-0.02	0.55	0.56	0.76	—	9043	1158	1	0	1	0	0	logfile
✔	7oJJ	12953	2023-07-07	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.003	0.60	0.0	0.04	14.79	0.00	2.000	8.25	0.06	7.7	92.3	0.0	-0.47	0.98	0.92	0.88	1.67	14330	1785	1	0	2	0	0	logfile
✔	7XUM	33474	2023-07-04	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.003	0.60	0.0	0.04	15.91	0.00	2.119	9.07	0.44	4.1	95.9	0.0	0.17	0.35	0.57	0.76	0.69	6155	816	1	0	1	0	0	logfile
✔	7Y1J	33563	2023-07-05	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	10.87	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.005	0.56	0.0	0.04	14.89	0.00	1.881	6.96	1.28	1.1	98.9	0.0	1.92	0.49	0.71	0.87	3.23	9487	1204	1	0	5	0	0	logfile
✔	7UH3	26504	2023-07-03	2022-03-25	2.99	3.63	2.98	3.5	0.003	0.61	0.0	0.04	10.05	0.00	1.909	4.09	0.00	2.0	98.0	0.0	0.91	0.48	0.84	2.83	3.5	0.003	0.70	0.0	0.04	13.54	0.00	2.188	8.97	1.24	2.2	97.8	0.0	1.59	1.02	0.50	0.86	1.53	3096	416	1	0	3	0	0	logfile
✔	8EiG	28155	2023-07-05	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.05	0.0	0.04	12.55	0.00	1.883	2.03	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	3.4	0.002	0.54	0.0	0.04	15.46	0.00	2.025	5.08	0.20	3.5	96.4	0.1	0.93	0.67	0.59	0.80	1.56	9249	1141	1	0	6	0	0	logfile
✔	7UGX	26498	2023-07-04	2022-03-25	2.96	3.60	2.95	3.5	0.002	0.50	0.0	0.04	10.61	0.00	2.234	3.61	0.00	1.5	98.5	0.0	1.81	0.48	0.83	2.71	3.5	0.003	0.63	0.0	0.04	13.34	0.00	2.184	6.27	0.62	2.2	97.8	0.0	2.70	0.98	0.49	0.88	1.91	3108	416	1	0	3	0	0	logfile
✔	7B6E	12053	2023-07-03	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile
✔	6ZFP	11185	2023-07-13	2020-06-17	3.24	3.95	3.34	3.7	0.006	0.70	0.0	0.05	14.34	0.00	2.198	9.71	0.12	8.4	91.5	0.1	-1.19	0.83	0.83	1.85	3.7	0.002	0.61	0.0	0.04	15.64	0.00	2.202	7.49	0.22	5.8	94.1	0.1	0.31	0.76	0.80	0.77	1.22	29385	3676	1	0	28	0	0	logfile
✔	6ZH4	11213	2023-07-13	2020-06-20	3.62	4.39	3.75	4.0	0.005	0.69	0.0	0.04	14.48	0.00	2.199	14.27	0.03	7.6	92.4	0.0	-0.76	0.89	0.87	1.88	4.0	0.003	0.64	0.0	0.04	15.83	0.00	2.143	11.83	0.25	6.3	93.7	0.0	0.48	0.36	0.88	0.86	1.50	29352	3670	1	0	28	0	0	logfile
✔	8SiB	40505	2023-07-03	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.89	0.0	0.05	15.64	0.00	2.221	13.44	2.58	13.3	86.4	0.2	-1.48	2.04	0.70	0.82	2.65	3544	454	1	0	0	0	0	logfile
✔	8HW2	35049	2023-07-05	2022-12-28	3.65	4.12	3.84	4.0	0.011	0.86	0.0	0.05	14.65	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.003	0.74	0.0	0.04	16.47	0.00	2.216	12.34	0.94	6.9	93.1	0.0	-1.37	1.15	0.68	0.79	1.23	10853	1375	1	0	2	0	0	logfile
✔	7V22	31634	2023-07-03	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	16.03	0.00	2.170	11.14	0.46	13.4	86.2	0.4	-2.46	0.55	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7YZ4	14387	2023-07-09	2022-02-18	3.84	3.32	4.13	3.2	0.004	0.78	0.0	0.05	11.95	0.01	2.253	1.46	0.92	3.6	96.4	0.0	-2.13	0.65	0.63	1.40	3.1	0.003	0.59	0.0	0.04	14.32	0.00	1.985	7.22	0.28	3.6	96.4	0.0	0.61	1.23	0.66	0.63	0.97	19805	1234	1	0	0	0	9953	logfile
✔	7T3N	25665	2023-07-03	2021-12-08	3.0	3.31	—	3.3	0.009	0.73	0.0	0.05	15.07	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.2	0.003	0.66	0.0	0.04	16.02	0.01	2.275	7.19	1.16	3.1	96.9	0.0	-0.21	0.37	0.49	0.85	2.69	3512	452	1	0	2	0	0	logfile
✔	6XTB	10618	2023-07-03	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	8FD5	29002	2023-07-03	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile

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