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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T2E | 25611 | 2023-08-09 | 2021-12-03 | 2.7 | 3.14 | — | 3.0 | 0.003 | 0.54 | 0.0 | 0.04 | 16.11 | 0.00 | 2.242 | 1.92 | 1.18 | 0.3 | 99.7 | 0.0 | 0.14 | 0.34 | 0.84 | 5.04 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 16.21 | 0.00 | 2.222 | 2.35 | 1.18 | 0.3 | 99.7 | 0.0 | 0.45 | 0.13 | 0.36 | 0.86 | 4.79 | 2390 | 312 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EPA | 28523 | 2023-08-09 | 2022-10-05 | 3.4 | 4.08 | 3.33 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 14.00 | 0.00 | 2.184 | 14.18 | 0.18 | 9.3 | 90.4 | 0.3 | -2.16 | 0.75 | 0.75 | 1.53 | 3.8 | 0.003 | 0.77 | 0.0 | 0.05 | 15.85 | 0.00 | 2.183 | 16.51 | 0.18 | 8.8 | 90.9 | 0.3 | -2.03 | 0.37 | 0.76 | 0.76 | 0.92 | 5045 | 637 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 6o0Y | 0584 | 2023-08-12 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 16.71 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | 3.7 | 0.004 | 0.58 | 0.0 | 0.04 | 16.88 | 0.00 | 2.074 | 5.83 | 0.50 | 4.6 | 95.4 | 0.0 | -0.15 | 0.32 | 0.85 | 0.88 | 2.54 | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 8DZG | 27797 | 2023-08-16 | 2022-08-07 | 3.1 | 3.44 | 3.21 | 3.5 | 0.008 | 0.73 | 0.0 | 0.04 | 16.80 | 0.00 | 2.076 | 2.92 | 0.29 | 4.8 | 95.0 | 0.2 | -0.15 | 0.67 | 0.79 | 3.03 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 16.55 | 0.00 | 2.162 | 4.64 | 0.14 | 5.8 | 93.8 | 0.4 | 0.73 | 1.13 | 0.69 | 0.83 | 3.44 | 19758 | 2520 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8EQ4 | 28535 | 2023-08-10 | 2022-10-07 | 2.71 | 3.56 | 2.72 | 3.3 | 0.006 | 0.74 | 0.0 | 0.05 | 12.21 | 0.02 | 2.233 | 7.56 | 0.00 | 1.1 | 98.9 | 0.0 | 1.28 | 0.68 | 0.87 | 4.24 | 3.3 | 0.005 | 0.63 | 0.0 | 0.05 | 14.50 | 0.00 | 2.271 | 7.70 | 1.44 | 1.8 | 98.2 | 0.0 | 1.32 | 1.29 | 0.68 | 0.87 | 4.36 | 6903 | 849 | 6 | 0 | 15 | 0 | 0 | logfile |
✔ | 7T57 | 25697 | 2023-08-12 | 2021-12-11 | 3.7 | 4.28 | 3.83 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 13.54 | 0.00 | 1.826 | 9.53 | 0.72 | 2.7 | 97.1 | 0.1 | 0.90 | 0.72 | 0.74 | 0.99 | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 15.90 | 0.00 | 1.971 | 11.42 | 0.32 | 3.2 | 96.8 | 0.0 | 0.99 | 0.87 | 0.73 | 0.80 | 1.00 | 11460 | 1464 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7NHo | 12335 | 2023-08-16 | 2021-02-11 | 2.66 | 3.46 | — | 3.3 | 0.014 | 2.16 | 1.0 | 0.44 | 18.54 | 0.02 | 1.974 | 2.75 | 1.77 | 5.4 | 94.4 | 0.1 | -2.33 | 0.58 | 0.79 | 3.76 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 17.60 | 0.00 | 1.828 | 9.91 | 2.84 | 3.0 | 97.0 | 0.0 | 1.15 | 1.70 | 0.62 | 0.84 | 3.32 | 19800 | 2086 | 26 | 0 | 62 | 0 | 0 | logfile |
✔ | 7V6Y | 31753 | 2023-08-10 | 2021-08-20 | 3.5 | 3.75 | — | 3.8 | 0.014 | 1.83 | 9.0 | 0.13 | 15.71 | 0.01 | 2.258 | 12.19 | 11.06 | 5.3 | 94.5 | 0.2 | 0.59 | 0.59 | 0.74 | 1.29 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.00 | 0.00 | 2.159 | 8.65 | 0.99 | 5.1 | 94.9 | 0.0 | 0.92 | 1.24 | 0.62 | 0.76 | 1.86 | 7484 | 990 | 3 | 0 | 8 | 0 | 0 | logfile |
✔ | 6Z3T | 11064 | 2023-08-09 | 2020-05-21 | 2.69 | 3.99 | 3.36 | 3.9 | 0.010 | 1.90 | 1.0 | 0.07 | 17.55 | 0.01 | 2.284 | 6.72 | 1.60 | 9.6 | 90.2 | 0.2 | -5.84 | 0.21 | 0.59 | 1.55 | 3.9 | 0.005 | 1.17 | 0.0 | 0.04 | 18.69 | 0.01 | 2.149 | 16.73 | 2.14 | 8.6 | 91.4 | 0.0 | -2.15 | 0.93 | 0.21 | 0.66 | 0.77 | 3608 | 441 | 4 | 0 | 21 | 0 | 0 | logfile |
✔ | 7T56 | 25696 | 2023-08-12 | 2021-12-11 | 3.7 | 4.23 | 3.77 | 4.1 | 0.004 | 0.68 | 0.0 | 0.05 | 13.02 | 0.00 | 1.719 | 9.32 | 0.72 | 3.3 | 96.6 | 0.1 | 0.18 | 0.72 | 0.76 | 1.54 | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 16.55 | 0.00 | 1.988 | 10.91 | 0.40 | 3.0 | 97.0 | 0.0 | 0.97 | 1.34 | 0.73 | 0.81 | 1.47 | 11460 | 1464 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SQS | 25392 | 2023-08-09 | 2021-11-06 | 3.1 | 3.86 | 2.91 | 3.6 | 0.002 | 0.47 | 0.0 | 0.04 | 13.61 | 0.00 | 2.317 | 3.59 | 0.22 | 2.9 | 97.1 | 0.0 | 1.01 | 0.76 | 0.84 | 2.45 | 3.6 | 0.004 | 0.57 | 0.0 | 0.04 | 14.95 | 0.00 | 2.243 | 4.28 | 0.00 | 4.6 | 95.4 | 0.0 | 0.93 | 0.32 | 0.77 | 0.86 | 2.75 | 4376 | 560 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DK3 | 27482 | 2023-08-10 | 2022-07-01 | 3.28 | 4.10 | 3.38 | 3.6 | 0.006 | 0.58 | 0.0 | 0.04 | 16.17 | 0.00 | 1.869 | 3.66 | 0.85 | 6.8 | 93.2 | 0.0 | -0.13 | 0.85 | 0.87 | 2.42 | 3.6 | 0.005 | 0.59 | 0.0 | 0.04 | 17.56 | 0.00 | 1.875 | 3.83 | 0.24 | 5.9 | 94.0 | 0.1 | -0.01 | 0.39 | 0.86 | 0.88 | 2.15 | 8905 | 999 | 7 | 52 | 4 | 0 | 0 | logfile |
✔ | 7N77 | 24222 | 2023-08-10 | 2021-06-09 | 3.2 | 4.05 | 3.31 | 3.7 | 0.006 | 1.31 | 0.0 | 0.06 | 12.82 | 0.01 | 1.692 | 9.63 | 0.14 | 3.5 | 96.5 | 0.0 | -1.56 | 0.64 | 0.74 | 1.92 | 3.7 | 0.003 | 0.89 | 0.0 | 0.04 | 13.91 | 0.00 | 2.016 | 6.14 | 0.14 | 2.1 | 97.9 | 0.0 | 2.12 | 1.62 | 0.68 | 0.82 | 0.92 | 7470 | 1036 | 1 | 0 | 4 | 2 | 0 | logfile |
✔ | 6RLD | 4919 | 2023-08-14 | 2019-05-02 | 2.9 | 3.28 | 2.83 | 3.2 | 0.009 | 1.38 | 0.0 | 0.06 | 17.57 | 0.01 | 2.306 | 5.79 | 0.47 | 4.6 | 95.4 | 0.0 | -3.38 | 0.74 | 0.82 | 3.94 | 3.2 | 0.003 | 0.58 | 0.0 | 0.04 | 15.88 | 0.00 | 2.171 | 8.86 | 1.53 | 2.7 | 97.3 | 0.0 | 1.60 | 0.71 | 0.76 | 0.84 | 2.84 | 15309 | 1855 | 14 | 0 | 21 | 0 | 0 | logfile |
✔ | 8B01 | 15775 | 2023-08-09 | 2022-09-06 | 3.03 | 3.65 | 3.02 | 3.5 | 0.004 | 0.60 | 0.0 | 0.04 | 13.05 | 0.00 | 2.217 | 2.82 | 0.53 | 2.9 | 97.1 | 0.0 | 2.16 | 0.67 | 0.82 | 2.94 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 14.65 | 0.00 | 2.223 | 3.70 | 0.35 | 1.8 | 98.2 | 0.0 | 1.95 | 0.44 | 0.71 | 0.86 | 2.82 | 5478 | 684 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 8DMK | 27542 | 2023-08-10 | 2022-07-08 | 3.7 | 4.20 | 3.87 | 4.0 | 0.003 | 0.57 | 0.0 | 0.04 | 14.60 | 0.00 | 1.425 | 12.24 | 0.00 | 6.4 | 93.6 | 0.0 | -1.18 | 0.76 | 0.66 | 1.02 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 16.05 | 0.00 | 2.086 | 15.88 | 0.25 | 6.3 | 93.7 | 0.0 | -1.30 | 1.08 | 0.79 | 0.73 | 0.98 | 7348 | 917 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7UPi | 26667 | 2023-08-10 | 2022-04-15 | 2.89 | 3.71 | 2.90 | 3.2 | 0.002 | 0.55 | 0.0 | 0.04 | 9.09 | 0.00 | 1.843 | 2.56 | 0.00 | 1.9 | 98.1 | 0.0 | -0.12 | 0.91 | 0.87 | 3.97 | 3.2 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.006 | 4.22 | 0.11 | 2.1 | 97.9 | 0.0 | -0.22 | 2.21 | 0.90 | 0.89 | 3.98 | 7775 | 972 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7TUY | 26135 | 2023-08-10 | 2022-02-03 | 2.98 | 3.60 | — | 3.4 | 0.005 | 0.87 | 0.0 | 0.05 | 12.82 | 0.01 | 2.202 | 7.13 | 0.26 | 5.6 | 94.4 | 0.0 | -3.71 | 0.68 | 0.81 | 3.08 | 3.4 | 0.019 | 0.75 | 0.0 | 0.04 | 15.45 | 0.01 | 2.177 | 10.74 | 2.72 | 5.5 | 94.5 | 0.0 | -1.18 | 1.02 | 0.69 | 0.83 | 2.03 | 7157 | 928 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 8FE1 | 29019 | 2023-08-14 | 2022-12-05 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15445 | 1772 | 10 | 0 | 48 | 0 | 0 | logfile |
✔ | 7DDQ | 30656 | 2023-08-17 | 2020-10-29 | 2.84 | 3.56 | — | 3.1 | 0.012 | 1.92 | 0.0 | 0.06 | 20.42 | 0.00 | 1.706 | 13.94 | 0.00 | 4.7 | 95.3 | 0.0 | 1.05 | 0.77 | 0.77 | 4.39 | 3.2 | 0.004 | 1.18 | 0.0 | 0.04 | 20.83 | 0.00 | 1.893 | 13.72 | 2.05 | 4.3 | 95.7 | 0.0 | 1.73 | 1.36 | 0.79 | 0.89 | 3.56 | 22571 | 2354 | 64 | 0 | 62 | 0 | 0 | logfile |