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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6J0B | 9760 | 2022-04-09 | 2018-12-23 | 2.9 | 3.24 | — | 3.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.44 | 0.01 | 2.311 | 4.63 | 4.01 | 3.8 | 96.0 | 0.2 | -3.73 | 0.57 | 0.83 | 3.57 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 17.20 | 0.00 | 2.150 | 8.26 | 3.97 | 3.4 | 96.6 | 0.0 | -0.54 | 0.75 | 0.55 | 0.84 | 2.75 | 46788 | 6000 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LZU | 4132 | 2022-04-21 | 2016-10-02 | 3.75 | 3.82 | 3.81 | 3.8 | 0.009 | 1.25 | 6.0 | 0.10 | 18.27 | 0.01 | 1.175 | 2.60 | 6.63 | 6.5 | 93.1 | 0.4 | -2.96 | 0.78 | 0.85 | 1.70 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 17.68 | 0.01 | 1.842 | 14.17 | 0.62 | 4.2 | 95.7 | 0.1 | -0.60 | 1.57 | 0.77 | 0.83 | 1.16 | 219122 | 12111 | 105 | 5678 | 266 | 0 | 0 | logfile |
✔ | 6AV9 | 7007 | 2022-04-04 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 12.69 | 0.01 | 1.920 | 37.26 | 0.33 | 12.8 | 86.8 | 0.4 | -4.62 | 0.58 | 0.80 | 2.42 | 3.8 | 0.013 | 1.43 | 1.0 | 0.05 | 16.27 | 0.01 | 2.017 | 22.50 | 0.22 | 10.9 | 88.7 | 0.5 | -2.19 | 1.26 | 0.59 | 0.79 | 1.19 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6AVB | 7008 | 2022-04-04 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.009 | 1.13 | 3.0 | 0.06 | 11.81 | 0.01 | 2.072 | 31.04 | 0.00 | 12.9 | 86.8 | 0.3 | -5.00 | 0.58 | 0.79 | 2.72 | 3.8 | 0.013 | 1.48 | 0.0 | 0.05 | 15.45 | 0.01 | 1.693 | 24.30 | 0.00 | 11.3 | 88.7 | 0.0 | -2.30 | 1.70 | 0.58 | 0.80 | 1.83 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6V39 | 21030 | 2022-04-09 | 2019-11-25 | 3.04 | 3.20 | — | 3.1 | 0.002 | 0.49 | 0.0 | 0.03 | 14.67 | 0.02 | 1.895 | 6.18 | 0.00 | 2.5 | 97.4 | 0.1 | -1.02 | 0.86 | 0.85 | 2.53 | 3.1 | 0.006 | 0.72 | 1.0 | 0.04 | 16.24 | 0.01 | 1.691 | 8.69 | 0.61 | 4.6 | 95.3 | 0.1 | -0.08 | 1.17 | 0.87 | 0.88 | 2.85 | 141897 | 5458 | 70 | 4615 | 116 | 273 | 0 | logfile |
✔ | 3J9C | 6224 | 2022-04-06 | 2014-12-25 | 2.9 | 3.02 | — | 3.1 | 0.005 | 1.11 | 0.0 | 0.05 | 14.41 | 0.00 | 2.277 | 7.02 | 6.13 | 4.8 | 95.2 | 0.0 | -0.81 | 0.74 | 0.87 | 2.67 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.40 | 0.00 | 2.184 | 7.85 | 3.09 | 2.6 | 97.4 | 0.0 | 0.29 | 1.52 | 0.76 | 0.86 | 3.08 | 23296 | 2961 | 7 | 0 | 14 | 0 | 0 | logfile |
✔ | 5Z3V | 6883 | 2022-04-05 | 2018-01-08 | 4.22 | 3.73 | — | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 23.01 | 0.00 | 2.160 | 12.97 | 0.00 | 7.8 | 92.2 | 0.0 | -2.72 | 0.69 | 0.74 | — | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 24.39 | 0.00 | 2.204 | 10.28 | 0.09 | 3.6 | 96.3 | 0.1 | 0.97 | 0.84 | 0.69 | 0.71 | — | 16758 | 1339 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 5T6R | 8368 | 2022-04-07 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.15 | 0.00 | 1.878 | 11.94 | 0.06 | 7.0 | 92.5 | 0.6 | -1.60 | 0.95 | 0.83 | 0.81 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 6CUE | 7621 | 2022-04-08 | 2018-03-26 | 4.0 | 4.33 | — | 4.1 | 0.007 | 0.95 | 0.0 | 0.07 | 9.98 | 0.01 | 2.121 | 6.19 | 0.21 | 7.4 | 92.6 | 0.0 | -3.55 | 0.82 | 0.83 | — | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 13.39 | 0.00 | 2.134 | 11.85 | 0.33 | 6.7 | 93.3 | 0.0 | -1.32 | 0.82 | 0.82 | 0.83 | — | 31692 | 3849 | 27 | 0 | 114 | 0 | 0 | logfile |
✔ | 6iP1 | 9697 | 2022-04-05 | 2018-11-01 | 3.9 | 4.05 | — | 4.0 | 0.006 | 1.03 | 0.0 | 0.05 | 11.71 | 0.00 | 1.321 | 7.91 | 0.34 | 7.5 | 92.5 | 0.0 | -5.85 | 0.59 | 0.72 | 1.01 | 4.0 | 0.004 | 0.95 | 0.0 | 0.04 | 18.38 | 0.00 | 2.200 | 16.09 | 1.02 | 7.3 | 92.7 | 0.0 | -0.36 | 1.25 | 0.60 | 0.75 | -0.05 | 11245 | 1420 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NSK | 0499 | 2022-04-04 | 2019-01-24 | 2.7 | 2.82 | 2.55 | 3.1 | 0.008 | 1.11 | 0.0 | 0.06 | 14.47 | 0.01 | 2.213 | 4.78 | 0.00 | 3.6 | 96.4 | 0.0 | -3.23 | 0.62 | 0.77 | 5.14 | 3.1 | 0.002 | 0.56 | 0.0 | 0.04 | 14.80 | 0.00 | 2.256 | 5.65 | 1.96 | 2.9 | 97.1 | 0.0 | 2.76 | 0.42 | 0.62 | 0.80 | 3.31 | 9096 | 1092 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 6iP2 | 9698 | 2022-04-07 | 2018-11-01 | 3.7 | 3.82 | — | 3.8 | 0.008 | 1.38 | 0.0 | 0.06 | 11.73 | 0.01 | 2.237 | 6.67 | 0.26 | 12.2 | 87.7 | 0.1 | -5.47 | 0.70 | 0.77 | 1.63 | 3.8 | 0.003 | 0.82 | 0.0 | 0.05 | 16.30 | 0.01 | 2.159 | 15.23 | 0.56 | 10.6 | 89.3 | 0.1 | -1.95 | 0.97 | 0.71 | 0.78 | 0.78 | 24660 | 3120 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 5Z3U | 6882 | 2022-04-05 | 2018-01-08 | 4.31 | 4.01 | — | 3.9 | 0.011 | 0.98 | 0.0 | 0.05 | 24.03 | 0.01 | 2.030 | 18.94 | 0.09 | 9.0 | 91.0 | 0.0 | -5.01 | 0.77 | 0.81 | — | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 24.49 | 0.00 | 2.052 | 11.46 | 0.00 | 5.5 | 94.5 | 0.0 | 0.31 | 0.80 | 0.75 | 0.76 | — | 16766 | 1341 | 12 | 292 | 3 | 0 | 0 | logfile |
✔ | 6EZ8 | 3984 | 2022-04-06 | 2017-11-14 | 4.0 | 4.07 | — | 4.1 | 0.007 | 1.29 | 0.0 | 0.06 | 11.10 | 0.01 | 2.277 | 4.82 | 0.83 | 6.1 | 93.6 | 0.3 | -5.17 | 0.61 | 0.77 | — | 4.1 | 0.005 | 0.86 | 0.0 | 0.04 | 16.19 | 0.01 | 2.141 | 9.82 | 0.75 | 5.8 | 94.2 | 0.0 | -2.16 | 1.62 | 0.63 | 0.82 | — | 20491 | 2621 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6EoJ | 3908 | 2022-04-05 | 2017-10-09 | 3.55 | 3.58 | 3.51 | 3.6 | 0.007 | 1.33 | 7.0 | 0.09 | 16.65 | 0.00 | 2.526 | 9.73 | 4.80 | 10.1 | 88.2 | 1.7 | -3.75 | 0.59 | 0.78 | 2.60 | 3.6 | 0.005 | 0.84 | 0.0 | 0.05 | 17.60 | 0.01 | 2.089 | 22.86 | 0.52 | 7.3 | 92.6 | 0.1 | -2.45 | 1.58 | 0.65 | 0.78 | 2.27 | 13688 | 1710 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 5H1Q | 9570 | 2022-04-06 | 2016-10-11 | 3.3 | 3.90 | — | 4.0 | 0.008 | 1.04 | 0.0 | 0.06 | 11.65 | 0.00 | 1.998 | 16.22 | 0.31 | 12.6 | 86.8 | 0.6 | -5.07 | 0.44 | 0.69 | 3.01 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 16.47 | 0.00 | 2.137 | 8.99 | 0.93 | 9.3 | 90.1 | 0.6 | -0.11 | 0.82 | 0.56 | 0.80 | 1.75 | 23784 | 2888 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAZ | 4788 | 2022-04-08 | 2019-04-08 | 4.46 | 4.58 | 4.41 | 4.5 | 0.011 | 1.60 | 29.0 | 0.14 | 18.54 | 0.01 | 1.308 | 23.31 | 6.20 | 17.7 | 81.4 | 1.0 | -5.70 | 0.65 | 0.65 | — | 4.5 | 0.007 | 1.00 | 1.0 | 0.05 | 15.62 | 0.01 | 1.872 | 19.41 | 0.15 | 13.1 | 86.9 | 0.0 | -3.38 | 3.61 | 0.66 | 0.65 | — | 38294 | 4764 | 18 | 23 | 6 | 0 | 0 | logfile |
✔ | 6RQL | 4984 | 2022-04-09 | 2019-05-16 | 2.9 | 2.93 | — | 3.0 | 0.009 | 1.09 | 1.0 | 0.06 | 12.93 | 0.01 | 1.977 | 6.62 | 0.74 | 8.3 | 91.7 | 0.0 | -4.74 | 0.60 | 0.67 | 2.47 | 2.9 | 0.004 | 0.69 | 0.0 | 0.04 | 17.16 | 0.00 | 2.124 | 10.50 | 3.45 | 6.3 | 93.7 | 0.0 | -0.91 | 1.92 | 0.69 | 0.73 | 2.10 | 51626 | 6246 | 20 | 84 | 0 | 0 | 0 | logfile |
✔ | 6RAY | 4787 | 2022-04-09 | 2019-04-08 | 4.28 | 4.39 | 4.31 | 4.4 | 0.013 | 1.77 | 39.0 | 0.16 | 18.46 | 0.02 | 1.031 | 19.77 | 7.45 | 17.4 | 81.8 | 0.8 | -5.68 | 0.58 | 0.59 | — | 4.3 | 0.005 | 0.85 | 0.0 | 0.04 | 15.24 | 0.00 | 2.082 | 15.65 | 0.09 | 11.4 | 88.5 | 0.1 | -3.33 | 1.14 | 0.60 | 0.57 | — | 39071 | 4887 | 18 | 13 | 6 | 0 | 0 | logfile |
✔ | 6KXS | 0782 | 2022-04-06 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.88 | 0.01 | 2.157 | 8.95 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | 3.4 | 0.004 | 0.74 | 0.0 | 0.05 | 16.71 | 0.01 | 2.118 | 10.82 | 0.47 | 8.9 | 91.1 | 0.0 | -2.03 | 0.57 | 0.70 | 0.72 | 2.14 | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |