Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6S6U	10106	2021-08-11	2019-07-03	3.5	3.61	3.48	3.6	0.004	0.54	0.0	0.46	13.31	0.00	2.058	5.97	0.44	3.4	96.6	0.0	-2.83	0.80	0.86	2.14	3.6	0.005	0.61	0.0	0.04	15.09	0.00	2.082	6.68	0.22	4.6	95.4	0.0	-0.37	0.53	0.81	0.87	1.99	82978	10720	20	0	24	0	0	logfile
✔	6S6T	10105	2021-08-08	2019-07-03	4.1	4.22	4.17	4.1	0.003	0.52	0.0	0.45	13.00	0.00	2.119	8.22	0.02	5.6	94.4	0.0	-3.19	0.74	0.83	—	4.1	0.003	0.57	0.0	0.04	13.27	0.00	2.081	8.73	0.07	4.2	95.8	0.0	-0.96	1.54	0.73	0.83	—	56543	7304	14	0	17	0	0	logfile
✔	6S6S	10104	2021-08-09	2019-07-03	3.9	4.02	4.04	3.9	0.003	0.54	0.0	0.44	13.16	0.00	2.057	8.41	0.00	5.4	94.6	0.0	-3.05	0.72	0.84	1.45	3.9	0.003	0.58	0.0	0.04	15.57	0.00	2.133	9.01	0.30	3.9	96.1	0.0	-0.52	3.24	0.73	0.84	1.38	60044	7752	16	0	20	0	0	logfile
✔	6HTQ	0270	2021-08-14	2018-10-04	4.5	4.18	—	4.1	0.008	0.89	0.0	0.04	17.41	0.01	2.213	8.09	0.32	10.3	89.4	0.3	-4.50	0.83	0.79	—	4.1	0.006	0.85	0.0	0.04	18.36	0.01	1.924	29.89	0.02	13.6	86.3	0.1	-2.88	2.56	0.83	0.80	—	146680	5640	53	4770	0	0	0	logfile
✔	6S6X	10108	2021-08-12	2019-07-03	3.5	3.64	3.54	3.6	0.004	0.60	0.0	0.45	14.21	0.00	2.111	6.79	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.002	0.53	0.0	0.04	15.65	0.00	2.157	6.18	0.19	2.8	97.2	0.0	-0.23	1.56	0.77	0.86	1.77	90342	11664	24	0	30	0	0	logfile
✔	6TUT	10595	2021-08-11	2020-01-08	3.25	3.23	3.21	3.1	0.010	1.10	0.0	0.06	11.16	0.01	2.096	5.22	0.36	8.1	91.8	0.1	-4.90	0.85	0.84	3.88	3.1	0.008	0.89	0.0	0.05	14.18	0.01	1.771	13.32	0.07	6.8	93.2	0.1	-1.50	0.63	0.86	0.86	2.95	40324	5084	23	0	7	0	0	logfile
✘	6VJA	21212	2021-08-07	2020-01-15	3.3	3.74	3.48	3.6	0.031	2.19	0.0	0.33	14.97	0.01	2.193	4.71	0.49	4.2	95.7	0.1	0.64	0.61	0.80	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9342	1204	8	0	6	0	0	logfile
✔	6U0N	20608	2021-08-09	2019-08-14	3.5	3.79	—	3.6	0.007	0.83	0.0	0.19	14.80	0.01	2.242	6.64	0.56	9.6	90.3	0.1	-5.29	0.79	0.83	2.15	3.6	0.008	1.15	2.0	0.08	15.85	0.01	1.823	14.81	0.30	6.3	93.7	0.0	-2.83	1.20	0.79	0.83	1.83	19322	2489	18	0	43	0	0	logfile
✔	6U0L	20605	2021-08-09	2019-08-14	3.3	3.66	—	3.6	0.011	0.99	1.0	0.19	15.75	0.01	2.106	7.96	2.41	9.5	90.3	0.1	-5.02	0.77	0.80	2.36	3.5	0.005	0.90	0.0	0.08	16.48	0.01	2.171	12.83	0.44	7.6	92.3	0.0	-2.37	1.23	0.78	0.82	1.88	19611	2501	19	0	46	0	0	logfile
✘	6CP6	7548	2021-08-11	2018-03-13	3.6	3.73	—	3.6	0.007	1.10	0.0	0.05	10.31	0.01	2.235	9.33	0.15	5.9	93.9	0.2	-3.10	0.75	0.76	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38814	5104	32	0	5	0	0	logfile
✔	5FTJ	3295	2021-08-10	2016-01-14	2.3	2.04	—	2.0	0.010	1.36	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.85	0.0	0.05	17.99	0.01	2.121	14.14	2.36	6.5	93.3	0.1	-0.59	1.25	0.47	0.68	1.50	34602	4338	18	0	18	120	0	logfile
✔	5FTK	3296	2021-08-10	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	24.37	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.007	1.01	3.0	0.05	17.73	0.01	1.835	18.49	3.88	8.4	91.5	0.1	-1.87	0.87	0.49	0.70	1.80	34374	4338	18	0	12	96	0	logfile
✔	6C6U	7351	2021-08-09	2018-01-19	3.7	3.83	—	3.8	0.008	1.05	0.0	0.06	12.40	0.01	2.073	5.28	0.29	7.8	92.0	0.1	-4.18	0.74	0.82	2.49	3.8	0.003	0.62	0.0	0.04	16.00	0.00	2.087	8.76	0.29	5.0	95.0	0.0	-0.31	2.27	0.75	0.81	1.49	26866	3273	11	61	3	0	0	logfile
✔	6RQF	4981	2021-08-08	2019-05-15	3.58	3.72	3.54	3.6	0.012	1.29	0.0	0.06	18.05	0.02	2.053	9.64	0.18	4.2	95.4	0.4	-3.15	0.73	0.87	2.61	3.6	0.003	0.64	0.0	0.04	17.00	0.00	2.194	7.70	0.25	3.2	96.7	0.1	0.90	1.15	0.73	0.86	1.86	16359	1944	28	0	29	0	0	logfile
✔	6oFX	20048	2021-08-13	2019-04-01	3.3	4.60	—	2.8	0.008	1.07	0.0	0.09	14.39	0.01	2.098	16.45	0.43	9.3	90.1	0.6	-4.73	0.91	0.82	1.04	2.8	0.004	0.67	0.0	0.04	16.76	0.01	1.926	26.32	0.34	9.7	90.2	0.1	-1.82	2.07	0.93	0.87	0.98	144986	5753	55	4659	0	0	0	logfile
✔	6oGi	20058	2021-08-13	2019-04-02	3.4	4.58	—	2.9	0.009	1.11	0.0	0.09	14.54	0.01	2.042	15.55	0.49	10.3	89.0	0.7	-4.74	0.90	0.82	1.06	2.9	0.006	0.69	0.0	0.04	16.74	0.00	1.976	27.81	0.85	10.5	89.5	0.1	-2.17	1.59	0.92	0.86	0.76	144895	5752	54	4656	0	0	0	logfile
✔	6oG7	20052	2021-08-15	2019-04-01	3.3	4.37	—	3.1	0.006	0.90	0.0	0.08	13.50	0.01	2.140	16.72	0.74	11.4	87.1	1.4	-4.43	0.91	0.84	0.96	3.1	0.008	0.75	0.0	0.04	16.26	0.01	1.572	27.38	0.56	10.6	89.3	0.1	-2.10	1.55	0.92	0.89	0.76	147794	6113	55	4657	0	0	0	logfile
✔	6oGF	20056	2021-08-15	2019-04-02	3.9	4.57	—	3.4	0.006	0.92	0.0	0.08	13.45	0.01	2.252	15.85	0.70	12.4	86.0	1.5	-4.77	0.91	0.85	0.79	3.4	0.007	0.81	0.0	0.04	17.17	0.01	1.916	34.80	0.92	12.1	87.8	0.1	-2.58	2.10	0.91	0.87	0.80	147733	6113	55	4655	0	0	0	logfile
✔	6oGG	20057	2021-08-15	2019-04-02	4.2	5.09	—	3.4	0.006	0.85	0.0	0.07	13.94	0.01	2.108	14.56	0.56	10.6	89.3	0.1	-4.88	0.87	0.76	—	3.4	0.004	0.72	0.0	0.04	18.33	0.01	1.756	36.29	0.02	12.6	87.3	0.1	-3.17	1.90	0.89	0.83	—	147733	6113	55	4655	0	0	0	logfile
✔	6BX3	7303	2021-08-08	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.68	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.005	0.92	0.0	0.05	13.33	0.00	2.018	29.37	0.00	18.2	81.7	0.1	-3.55	1.46	0.74	0.74	—	10456	1413	7	0	0	0	0	logfile

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