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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6W1S | 21514 | 2023-08-26 | 2020-03-04 | 4.02 | 4.48 | — | 4.1 | 0.008 | 0.79 | 0.0 | 0.04 | 12.39 | 0.00 | 1.330 | 9.41 | 0.03 | 13.4 | 86.4 | 0.2 | -3.32 | 0.81 | 0.74 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 12.26 | 0.00 | 2.043 | 10.99 | 0.00 | 14.5 | 85.4 | 0.1 | -1.08 | 0.57 | 0.81 | 0.75 | — | 47275 | 6862 | 25 | 0 | 567 | 0 | 0 | logfile |
✔ | 7X7U | 33048 | 2023-08-10 | 2022-03-10 | 3.77 | 3.98 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 13.53 | 0.01 | 2.276 | 4.03 | 0.27 | 7.9 | 92.0 | 0.1 | -4.10 | 0.55 | 0.69 | 3.28 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 15.82 | 0.00 | 2.187 | 10.31 | 0.81 | 5.7 | 94.3 | 0.0 | -2.20 | 0.99 | 0.71 | 0.85 | 2.53 | 6862 | 878 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 8A9A | 15274 | 2023-08-12 | 2022-06-28 | 3.3 | 3.59 | 3.34 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 18.00 | 0.00 | 2.116 | 12.52 | 0.14 | 10.5 | 89.1 | 0.4 | -1.45 | 0.63 | 0.58 | 1.12 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.22 | 0.00 | 2.151 | 16.93 | 0.43 | 10.9 | 88.8 | 0.3 | -2.17 | 1.47 | 0.70 | 0.69 | 1.25 | 12772 | 1618 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L85 | 23222 | 2023-08-16 | 2020-12-31 | 2.9 | 3.14 | 2.89 | 3.1 | 0.025 | 1.68 | 0.0 | 0.10 | 9.89 | 0.01 | 2.365 | 2.39 | 0.00 | 2.3 | 97.7 | 0.0 | 0.88 | 0.81 | 0.89 | 4.84 | 3.1 | 0.005 | 0.61 | 0.0 | 0.05 | 15.79 | 0.01 | 2.156 | 7.44 | 1.12 | 3.2 | 96.8 | 0.0 | 0.92 | 1.29 | 0.76 | 0.90 | 3.92 | 20556 | 2664 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QC8 | 4500 | 2023-08-13 | 2018-12-27 | 4.2 | 4.28 | 4.19 | 4.2 | 0.008 | 1.26 | 0.0 | 1.03 | 11.78 | 0.01 | 2.069 | 7.62 | 0.57 | 11.9 | 88.0 | 0.1 | -4.06 | 0.63 | 0.76 | — | 4.2 | 0.009 | 1.73 | 0.0 | 0.31 | 13.74 | 0.01 | 1.995 | 19.28 | 0.04 | 11.4 | 88.6 | 0.0 | -1.58 | 1.73 | 0.64 | 0.78 | — | 65394 | 8092 | 58 | 0 | 18 | 0 | 0 | logfile |
✔ | 8EA3 | 27971 | 2023-08-10 | 2022-08-27 | 3.7 | 3.91 | 3.69 | 3.8 | 0.013 | 1.65 | 12.0 | 0.09 | 16.88 | 0.02 | 1.162 | 11.38 | 0.29 | 2.4 | 97.4 | 0.2 | -1.04 | 0.75 | 0.70 | 2.00 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 18.89 | 0.00 | 1.926 | 8.59 | 0.25 | 2.5 | 97.5 | 0.0 | 1.54 | 1.43 | 0.81 | 0.82 | 1.32 | 55955 | 5618 | 44 | 495 | 26 | 0 | 0 | logfile |
✔ | 7XCH | 33120 | 2023-08-27 | 2022-03-24 | 3.4 | 3.89 | 3.93 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.87 | 0.00 | 2.001 | 7.63 | 0.29 | 3.9 | 95.9 | 0.2 | 0.62 | 0.76 | 0.77 | 1.70 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 15.46 | 0.00 | 1.933 | 12.10 | 0.23 | 6.4 | 93.4 | 0.2 | -0.14 | 0.84 | 0.77 | 0.82 | 1.69 | 35749 | 4381 | 33 | 0 | 72 | 0 | 0 | logfile |
✔ | 7WS4 | 32743 | 2023-08-19 | 2022-01-28 | 3.7 | 4.11 | — | 3.9 | 0.004 | 0.62 | 0.0 | 0.05 | 13.41 | 0.00 | 2.110 | 9.30 | 0.00 | 3.5 | 96.5 | 0.0 | 0.09 | 0.83 | 0.85 | 2.54 | 3.9 | 0.007 | 0.69 | 0.0 | 0.05 | 14.93 | 0.00 | 2.105 | 10.56 | 0.31 | 4.4 | 95.6 | 0.0 | -0.12 | 0.34 | 0.84 | 0.87 | 2.50 | 26566 | 3327 | 22 | 0 | 38 | 0 | 0 | logfile |
✔ | 8E14 | 27823 | 2023-08-12 | 2022-08-09 | 3.36 | 4.87 | 3.36 | 3.5 | 0.007 | 1.12 | 1.0 | 0.08 | 24.71 | 0.01 | 2.182 | 16.48 | 0.41 | 17.7 | 82.3 | 0.0 | -2.84 | 0.92 | 0.86 | 0.70 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 24.61 | 0.00 | 2.177 | 15.59 | 0.31 | 17.1 | 82.9 | 0.0 | -2.52 | 0.32 | 0.92 | 0.86 | 0.85 | 12442 | 1161 | 16 | 160 | 2 | 0 | 0 | logfile |
✔ | 7XoL | 33351 | 2023-08-09 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.73 | 0.00 | 2.100 | 12.34 | 0.11 | 1.1 | 98.9 | 0.0 | 2.20 | 0.25 | 0.90 | 0.90 | 1.60 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WP0 | 32665 | 2023-08-09 | 2022-01-22 | 3.71 | 3.94 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 14.49 | 0.01 | 2.281 | 5.81 | 0.59 | 8.5 | 91.5 | 0.0 | -4.57 | 0.65 | 0.80 | 3.41 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 15.95 | 0.00 | 2.286 | 10.65 | 0.00 | 8.0 | 92.0 | 0.0 | -1.94 | 0.56 | 0.64 | 0.79 | 2.56 | 3174 | 407 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 5Go9 | 9528 | 2023-08-26 | 2016-07-26 | 4.4 | 4.59 | — | 4.4 | 0.020 | 1.79 | 36.0 | 0.11 | 12.27 | 0.01 | 2.185 | 7.55 | 0.88 | 8.7 | 90.7 | 0.6 | -4.90 | 0.78 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 105068 | 13692 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7PK6 | 13466 | 2023-08-14 | 2021-08-25 | 2.15 | 2.27 | 2.23 | 2.3 | 0.005 | 0.60 | 0.0 | 0.05 | 17.06 | 0.01 | 1.864 | 4.25 | 2.22 | 2.0 | 98.0 | 0.0 | 1.43 | 0.73 | 0.77 | 4.80 | 2.2 | 0.003 | 0.55 | 0.0 | 0.04 | 17.46 | 0.00 | 2.152 | 6.42 | 2.12 | 2.2 | 97.8 | 0.0 | 1.53 | 0.87 | 0.78 | 0.88 | 4.85 | 120580 | 15100 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NS6 | 12561 | 2023-08-12 | 2021-03-05 | 3.18 | 4.09 | — | 3.2 | 0.004 | 0.85 | 25.0 | 0.06 | 13.20 | 0.00 | 2.006 | 12.56 | 0.00 | 2.3 | 97.6 | 0.1 | 0.71 | 0.87 | 0.81 | 1.73 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.34 | 0.00 | 2.115 | 10.89 | 0.20 | 3.2 | 96.8 | 0.0 | 0.28 | 1.52 | 0.89 | 0.86 | 2.02 | 55899 | 7109 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 6PCS | 20306 | 2023-08-17 | 2019-06-18 | 2.8 | 3.17 | — | 3.0 | 0.005 | 0.40 | 0.0 | 0.02 | 12.69 | 0.03 | 1.658 | 3.31 | 1.31 | 5.7 | 94.1 | 0.1 | -3.87 | 0.66 | 0.86 | 3.98 | 3.0 | 0.006 | 0.72 | 0.0 | 0.04 | 15.09 | 0.01 | 1.964 | 8.80 | 4.06 | 7.2 | 92.5 | 0.3 | -1.60 | 1.27 | 0.67 | 0.89 | 3.52 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCR | 20305 | 2023-08-17 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.006 | 0.47 | 0.0 | 0.03 | 13.21 | 0.03 | 1.808 | 2.72 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.005 | 0.69 | 0.0 | 0.03 | 14.91 | 0.01 | 1.905 | 6.82 | 2.36 | 6.1 | 93.9 | 0.0 | -0.53 | 1.23 | 0.72 | 0.91 | 4.47 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✘ | 7ZK5 | 14755 | 2023-08-11 | 2022-04-12 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9435 | 1177 | 1 | 0 | 10 | 33 | 0 | logfile |
✔ | 7ZKB | 14761 | 2023-08-11 | 2022-04-12 | 4.7 | 4.80 | 4.47 | 4.7 | 0.013 | 1.10 | 2.0 | 0.06 | 14.01 | 0.00 | 2.224 | 16.22 | 0.21 | 6.9 | 93.1 | 0.0 | 0.07 | 0.56 | 0.74 | — | 4.7 | 0.003 | 0.71 | 0.0 | 0.04 | 14.48 | 0.00 | 2.134 | 14.95 | 0.00 | 6.4 | 93.6 | 0.0 | -0.02 | 0.55 | 0.56 | 0.76 | — | 9043 | 1158 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8CKZ | 16707 | 2023-08-13 | 2023-02-16 | 3.07 | 3.27 | 3.09 | 3.2 | 0.005 | 0.90 | 0.0 | 0.05 | 12.35 | 0.01 | 1.966 | 3.43 | 0.00 | 1.1 | 98.9 | 0.0 | -1.16 | 0.50 | 0.80 | 4.33 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 16.14 | 0.00 | 2.066 | 8.92 | 0.34 | 1.0 | 99.0 | 0.0 | 1.65 | 1.10 | 0.52 | 0.82 | 3.89 | 13910 | 1800 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XUM | 33474 | 2023-08-09 | 2022-05-19 | 3.8 | 3.49 | 3.48 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 13.82 | 0.00 | 1.938 | 6.52 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 0.56 | 0.76 | 1.43 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.119 | 9.07 | 0.44 | 4.1 | 95.9 | 0.0 | 0.17 | 0.35 | 0.57 | 0.76 | 0.69 | 6155 | 816 | 1 | 0 | 1 | 0 | 0 | logfile |