Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W1S	21514	2023-08-26	2020-03-04	4.02	4.48	—	4.1	0.008	0.79	0.0	0.04	12.39	0.00	1.330	9.41	0.03	13.4	86.4	0.2	-3.32	0.81	0.74	—	4.1	0.003	0.71	0.0	0.04	12.26	0.00	2.043	10.99	0.00	14.5	85.4	0.1	-1.08	0.57	0.81	0.75	—	47275	6862	25	0	567	0	0	logfile
✔	7X7U	33048	2023-08-10	2022-03-10	3.77	3.98	—	3.9	0.007	0.94	0.0	0.06	13.53	0.01	2.276	4.03	0.27	7.9	92.0	0.1	-4.10	0.55	0.69	3.28	3.9	0.003	0.69	0.0	0.04	15.82	0.00	2.187	10.31	0.81	5.7	94.3	0.0	-2.20	0.99	0.71	0.85	2.53	6862	878	8	0	1	0	0	logfile
✔	8A9A	15274	2023-08-12	2022-06-28	3.3	3.59	3.34	3.6	0.003	0.67	0.0	0.04	18.00	0.00	2.116	12.52	0.14	10.5	89.1	0.4	-1.45	0.63	0.58	1.12	3.6	0.004	0.78	0.0	0.04	18.22	0.00	2.151	16.93	0.43	10.9	88.8	0.3	-2.17	1.47	0.70	0.69	1.25	12772	1618	2	0	0	0	0	logfile
✔	7L85	23222	2023-08-16	2020-12-31	2.9	3.14	2.89	3.1	0.025	1.68	0.0	0.10	9.89	0.01	2.365	2.39	0.00	2.3	97.7	0.0	0.88	0.81	0.89	4.84	3.1	0.005	0.61	0.0	0.05	15.79	0.01	2.156	7.44	1.12	3.2	96.8	0.0	0.92	1.29	0.76	0.90	3.92	20556	2664	24	0	0	0	0	logfile
✔	6QC8	4500	2023-08-13	2018-12-27	4.2	4.28	4.19	4.2	0.008	1.26	0.0	1.03	11.78	0.01	2.069	7.62	0.57	11.9	88.0	0.1	-4.06	0.63	0.76	—	4.2	0.009	1.73	0.0	0.31	13.74	0.01	1.995	19.28	0.04	11.4	88.6	0.0	-1.58	1.73	0.64	0.78	—	65394	8092	58	0	18	0	0	logfile
✔	8EA3	27971	2023-08-10	2022-08-27	3.7	3.91	3.69	3.8	0.013	1.65	12.0	0.09	16.88	0.02	1.162	11.38	0.29	2.4	97.4	0.2	-1.04	0.75	0.70	2.00	3.8	0.003	0.58	0.0	0.04	18.89	0.00	1.926	8.59	0.25	2.5	97.5	0.0	1.54	1.43	0.81	0.82	1.32	55955	5618	44	495	26	0	0	logfile
✔	7XCH	33120	2023-08-27	2022-03-24	3.4	3.89	3.93	3.5	0.003	0.58	0.0	0.04	13.87	0.00	2.001	7.63	0.29	3.9	95.9	0.2	0.62	0.76	0.77	1.70	3.5	0.004	0.68	0.0	0.04	15.46	0.00	1.933	12.10	0.23	6.4	93.4	0.2	-0.14	0.84	0.77	0.82	1.69	35749	4381	33	0	72	0	0	logfile
✔	7WS4	32743	2023-08-19	2022-01-28	3.7	4.11	—	3.9	0.004	0.62	0.0	0.05	13.41	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.007	0.69	0.0	0.05	14.93	0.00	2.105	10.56	0.31	4.4	95.6	0.0	-0.12	0.34	0.84	0.87	2.50	26566	3327	22	0	38	0	0	logfile
✔	8E14	27823	2023-08-12	2022-08-09	3.36	4.87	3.36	3.5	0.007	1.12	1.0	0.08	24.71	0.01	2.182	16.48	0.41	17.7	82.3	0.0	-2.84	0.92	0.86	0.70	3.5	0.003	0.70	0.0	0.04	24.61	0.00	2.177	15.59	0.31	17.1	82.9	0.0	-2.52	0.32	0.92	0.86	0.85	12442	1161	16	160	2	0	0	logfile
✔	7XoL	33351	2023-08-09	2022-05-01	3.26	4.02	3.37	3.4	0.002	0.49	0.0	0.04	13.50	0.00	2.224	10.95	0.00	0.5	99.5	0.0	2.40	0.89	0.88	1.73	3.4	0.003	0.56	0.0	0.04	14.73	0.00	2.100	12.34	0.11	1.1	98.9	0.0	2.20	0.25	0.90	0.90	1.60	53970	7336	14	0	0	0	0	logfile
✔	7WP0	32665	2023-08-09	2022-01-22	3.71	3.94	—	3.9	0.007	0.94	0.0	0.06	14.49	0.01	2.281	5.81	0.59	8.5	91.5	0.0	-4.57	0.65	0.80	3.41	3.9	0.003	0.66	0.0	0.04	15.95	0.00	2.286	10.65	0.00	8.0	92.0	0.0	-1.94	0.56	0.64	0.79	2.56	3174	407	3	0	1	0	0	logfile
✘	5Go9	9528	2023-08-26	2016-07-26	4.4	4.59	—	4.4	0.020	1.79	36.0	0.11	12.27	0.01	2.185	7.55	0.88	8.7	90.7	0.6	-4.90	0.78	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105068	13692	8	0	4	0	0	logfile
✔	7PK6	13466	2023-08-14	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	7NS6	12561	2023-08-12	2021-03-05	3.18	4.09	—	3.2	0.004	0.85	25.0	0.06	13.20	0.00	2.006	12.56	0.00	2.3	97.6	0.1	0.71	0.87	0.81	1.73	3.2	0.002	0.58	0.0	0.04	14.34	0.00	2.115	10.89	0.20	3.2	96.8	0.0	0.28	1.52	0.89	0.86	2.02	55899	7109	20	0	52	0	0	logfile
✔	6PCS	20306	2023-08-17	2019-06-18	2.8	3.17	—	3.0	0.005	0.40	0.0	0.02	12.69	0.03	1.658	3.31	1.31	5.7	94.1	0.1	-3.87	0.66	0.86	3.98	3.0	0.006	0.72	0.0	0.04	15.09	0.01	1.964	8.80	4.06	7.2	92.5	0.3	-1.60	1.27	0.67	0.89	3.52	72169	967	8	3015	1	0	0	logfile
✔	6PCR	20305	2023-08-17	2019-06-18	2.5	3.04	—	2.9	0.006	0.47	0.0	0.03	13.21	0.03	1.808	2.72	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.005	0.69	0.0	0.03	14.91	0.01	1.905	6.82	2.36	6.1	93.9	0.0	-0.53	1.23	0.72	0.91	4.47	72166	967	8	3015	1	0	0	logfile
✘	7ZK5	14755	2023-08-11	2022-04-12	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9435	1177	1	0	10	33	0	logfile
✔	7ZKB	14761	2023-08-11	2022-04-12	4.7	4.80	4.47	4.7	0.013	1.10	2.0	0.06	14.01	0.00	2.224	16.22	0.21	6.9	93.1	0.0	0.07	0.56	0.74	—	4.7	0.003	0.71	0.0	0.04	14.48	0.00	2.134	14.95	0.00	6.4	93.6	0.0	-0.02	0.55	0.56	0.76	—	9043	1158	1	0	1	0	0	logfile
✔	8CKZ	16707	2023-08-13	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.60	0.0	0.04	16.14	0.00	2.066	8.92	0.34	1.0	99.0	0.0	1.65	1.10	0.52	0.82	3.89	13910	1800	15	0	0	0	0	logfile
✔	7XUM	33474	2023-08-09	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.003	0.60	0.0	0.04	15.91	0.00	2.119	9.07	0.44	4.1	95.9	0.0	0.17	0.35	0.57	0.76	0.69	6155	816	1	0	1	0	0	logfile

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