Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BoB	7123	2023-02-23	2017-11-18	3.9	3.98	—	3.9	0.007	1.20	0.0	0.06	11.84	0.01	2.259	7.24	0.76	11.1	88.5	0.3	-4.96	0.58	0.65	1.68	3.9	0.004	0.89	0.0	0.05	16.41	0.00	2.099	13.75	0.76	8.4	91.6	0.0	-1.37	0.99	0.73	0.80	1.63	19340	2412	4	0	0	0	0	logfile
✔	6H25	0128	2023-02-24	2018-07-13	3.8	3.89	—	3.9	0.006	1.10	1.0	0.06	10.98	0.01	1.101	12.90	1.51	5.7	93.9	0.4	-2.77	0.49	0.63	1.51	3.9	0.003	0.71	0.0	0.04	15.76	0.00	2.094	9.76	0.40	4.9	95.0	0.0	0.01	1.57	0.70	0.81	1.54	22138	2971	12	6	0	0	0	logfile
✔	6ZA9	11127	2023-02-20	2020-06-05	3.76	3.97	—	3.9	0.012	1.53	0.0	0.24	15.81	0.01	2.254	5.79	0.74	4.0	96.0	0.0	-3.65	0.67	0.81	2.40	3.9	0.003	0.72	0.0	0.04	16.90	0.01	2.183	12.49	0.28	3.7	96.3	0.0	0.35	1.28	0.66	0.78	1.13	11067	1375	23	0	9	0	0	logfile
✔	6PW4	20498	2023-02-24	2019-07-22	3.53	3.64	—	3.6	0.008	1.14	0.0	0.05	17.20	0.01	2.302	5.63	0.38	10.7	89.3	0.1	-6.92	0.71	0.80	1.68	3.6	0.003	0.72	0.0	0.04	17.49	0.00	2.127	11.19	0.42	9.9	90.1	0.0	-1.43	0.56	0.70	0.78	1.07	22348	2742	8	0	10	0	0	logfile
✔	6L7C	0842	2023-02-23	2019-11-01	3.34	3.45	—	3.4	0.006	0.86	0.0	0.05	14.85	0.01	2.347	3.80	1.20	4.3	95.7	0.0	-3.41	0.73	0.84	2.34	3.4	0.003	0.64	0.0	0.04	16.78	0.00	2.208	8.94	0.22	3.4	96.6	0.0	1.03	0.57	0.76	0.86	1.84	20601	2655	27	0	0	0	0	logfile
✔	6LZ3	30022	2023-02-21	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	16.42	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.003	0.64	0.0	0.04	16.09	0.00	2.134	9.22	0.30	7.2	92.8	0.0	-1.94	0.68	0.80	0.83	2.69	15968	1944	8	0	4	0	0	logfile
✔	7M9A	23721	2023-02-25	2021-03-30	3.9	3.60	3.86	3.9	0.003	0.66	4.0	0.04	14.89	0.00	1.381	7.36	0.11	2.6	97.3	0.1	0.14	0.69	0.65	1.16	3.8	0.003	0.68	0.0	0.04	17.96	0.00	2.100	9.50	0.37	2.8	97.1	0.1	0.90	2.88	0.76	0.76	1.04	26139	3084	24	54	10	0	0	logfile
✔	6o7i	0642	2023-02-23	2019-03-07	3.2	3.32	—	3.3	0.012	1.17	0.0	0.07	12.13	0.01	2.131	7.58	1.03	8.2	91.8	0.0	-4.50	0.71	0.77	3.69	3.3	0.002	0.63	0.0	0.04	15.02	0.00	2.119	9.43	0.31	4.8	95.2	0.0	-0.98	1.72	0.74	0.83	2.58	20276	2377	15	49	97	0	0	logfile
✔	6PEK	20327	2023-02-20	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.74	0.0	0.04	14.87	0.00	1.129	14.37	0.00	3.0	97.0	0.0	-0.34	0.99	0.71	0.77	—	11106	1405	11	0	13	0	0	logfile
✔	8A5D	15165	2023-02-20	2022-06-14	2.9	3.06	2.94	3.0	0.016	1.88	1.0	0.09	13.81	0.01	2.001	0.82	0.23	2.6	97.3	0.1	-0.81	0.72	0.80	4.42	3.0	0.003	0.57	0.0	0.04	16.70	0.00	1.930	4.78	1.99	2.9	97.1	0.0	1.45	0.63	0.80	0.85	3.53	12222	1519	8	0	6	0	0	logfile
✔	7Y00	33536	2023-02-20	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.68	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.70	0.0	0.04	29.16	0.00	2.100	14.11	0.47	2.3	97.7	0.0	1.85	2.02	0.93	0.87	1.15	12411	762	10	310	0	0	0	logfile
✔	7NS4	12560	2023-02-17	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.63	0.0	0.04	15.99	0.00	2.210	7.87	0.51	8.2	91.8	0.0	0.54	0.36	0.74	0.83	2.20	5465	698	4	0	2	0	0	logfile
✔	6HUJ	0279	2023-02-21	2018-10-08	3.04	3.16	3.04	3.1	0.005	0.86	0.0	0.06	8.71	0.01	2.265	4.61	0.00	4.0	96.0	0.0	-4.37	0.76	0.83	4.82	3.1	0.005	0.60	0.0	0.04	13.75	0.00	2.161	7.75	0.31	3.5	96.5	0.0	-0.11	0.65	0.76	0.87	4.18	15255	1812	15	0	35	0	0	logfile
✔	6TG9	10495	2023-02-25	2019-11-15	3.24	3.34	—	3.3	0.016	1.33	0.0	0.06	14.65	0.00	1.847	11.53	0.62	7.8	92.0	0.2	-4.02	0.80	0.78	3.11	3.3	0.004	0.69	0.0	0.04	16.26	0.00	1.975	10.47	0.23	5.3	94.5	0.1	-1.22	0.68	0.83	0.84	2.89	25412	3318	14	0	26	0	0	logfile
✔	6ZB5	11145	2023-02-25	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.81	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.003	0.57	0.0	0.04	17.55	0.00	2.232	2.32	3.49	5.0	95.0	0.0	-0.95	1.13	0.77	0.86	3.40	24499	3096	9	0	29	0	0	logfile
✔	7XD0	33131	2023-02-23	2022-03-26	3.48	2.98	—	2.9	0.003	0.57	0.0	0.04	27.21	0.00	2.062	11.16	0.26	3.0	97.0	0.0	1.30	0.82	0.81	1.79	2.9	0.004	0.60	0.0	0.04	28.06	0.00	2.167	10.17	0.13	4.2	95.8	0.0	1.75	0.36	0.83	0.83	1.58	13222	915	12	292	0	0	0	logfile
✔	5L08	8300	2023-02-21	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.5	0.006	1.23	0.0	0.06	14.56	0.01	1.854	41.71	0.00	6.7	93.3	0.0	-3.29	3.82	0.26	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	6BoA	7122	2023-02-23	2017-11-18	4.2	4.31	—	4.3	0.007	1.29	0.0	0.06	11.91	0.01	2.296	4.73	1.74	10.5	89.5	0.0	-5.87	0.73	0.81	—	4.2	0.004	0.85	0.0	0.05	13.51	0.00	2.139	12.64	0.19	10.2	89.8	0.0	-0.72	1.90	0.74	0.82	—	19040	2372	4	0	0	0	0	logfile
✔	6B3J	7039	2023-02-18	2017-09-22	3.3	3.63	3.26	3.5	0.007	1.00	0.0	0.06	9.89	0.01	2.229	4.31	0.00	4.2	95.8	0.0	0.60	0.66	0.73	2.35	3.5	0.003	0.66	0.0	0.04	14.91	0.00	2.186	12.43	0.31	4.3	95.7	0.0	0.92	1.71	0.70	0.78	1.51	9034	1129	6	0	0	0	0	logfile
✔	7VHQ	32003	2023-02-22	2021-09-22	3.27	3.68	—	3.5	0.003	0.60	0.0	0.04	13.43	0.00	2.165	9.53	0.00	3.1	96.9	0.0	1.82	0.73	0.82	1.67	3.4	0.004	0.63	0.0	0.04	15.43	0.00	2.148	10.42	0.61	4.1	95.9	0.0	1.79	0.42	0.74	0.85	1.46	16650	2076	12	0	0	0	0	logfile

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