Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GWF	34311	2023-02-24	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.003	0.66	0.0	0.04	17.00	0.00	2.124	13.47	0.31	7.9	91.9	0.2	-1.35	1.46	0.86	0.83	1.64	21955	2668	13	52	9	1	0	logfile
✔	7oZP	13131	2023-02-21	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.95	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	7TNW	26021	2023-02-26	2022-01-21	3.1	2.85	—	2.9	0.013	1.80	21.0	0.13	14.83	0.01	2.197	5.99	1.81	7.7	91.5	0.8	-1.73	0.85	0.84	3.50	2.2	0.004	0.80	0.0	0.05	15.96	0.00	2.005	10.03	0.51	5.6	94.4	0.0	-0.37	1.06	0.86	0.84	2.89	27846	3357	39	0	111	0	0	logfile
✔	7CXM	30492	2023-02-23	2020-09-02	2.9	3.58	—	3.3	0.010	1.58	80.0	0.10	18.07	0.01	1.572	20.04	12.89	9.0	90.4	0.6	-4.28	0.83	0.88	3.19	3.3	0.003	0.74	0.0	0.04	17.34	0.00	2.146	12.61	5.36	7.4	92.4	0.1	-1.28	0.58	0.82	0.87	2.82	21295	2563	12	57	8	0	0	logfile
✔	7V4i	31712	2023-02-26	2021-08-13	3.3	3.91	—	3.9	0.003	0.58	0.0	0.04	14.20	0.01	2.079	10.38	0.00	5.5	94.5	0.0	-1.15	0.70	0.74	1.97	3.9	0.003	0.60	0.0	0.04	15.97	0.01	2.102	11.33	0.17	4.9	95.1	0.0	-0.92	0.37	0.71	0.75	1.59	27680	3560	10	0	0	0	0	logfile
✔	8CRT	26958	2023-02-22	2022-05-11	3.0	2.91	3.16	3.0	0.003	0.58	0.0	0.04	11.64	0.01	2.205	5.04	2.36	1.5	98.5	0.0	1.86	0.51	0.72	2.69	3.0	0.003	0.58	0.0	0.04	14.73	0.00	2.109	8.68	1.41	1.7	98.3	0.0	2.02	0.66	0.52	0.84	2.49	17925	2305	12	0	6	0	0	logfile
✔	7SBL	24982	2023-02-26	2021-09-25	3.4	2.79	—	2.2	0.013	1.86	19.0	0.13	13.83	0.01	2.197	8.36	2.72	7.8	91.5	0.7	-1.91	0.84	0.76	2.62	2.0	0.003	0.77	0.0	0.05	16.26	0.00	2.051	11.38	0.56	5.9	94.0	0.1	-0.62	1.49	0.84	0.83	2.03	27026	3286	35	0	96	0	0	logfile
✔	7SBP	24984	2023-02-26	2021-09-25	3.1	2.87	—	2.2	0.013	1.77	15.0	0.11	14.64	0.01	2.078	6.07	1.38	7.0	92.3	0.7	-1.85	0.83	0.81	3.14	3.0	0.004	0.77	0.0	0.05	16.25	0.00	2.104	10.58	0.65	4.7	95.1	0.2	-0.32	0.66	0.84	0.84	2.47	27693	3330	42	0	123	0	0	logfile
✔	7XoA	33342	2023-02-27	2022-05-01	3.2	2.32	3.20	2.1	0.002	0.54	0.0	0.04	9.21	0.01	1.863	8.77	0.06	2.8	97.2	0.1	-2.65	0.59	0.48	1.63	2.0	0.004	0.69	0.0	0.05	14.53	0.00	2.118	9.99	0.38	5.3	94.7	0.0	-1.07	0.87	0.73	0.77	2.59	29202	3670	8	0	35	0	0	logfile
✔	7WK0	32554	2023-02-19	2022-01-08	3.32	2.37	—	2.2	0.004	0.65	0.0	0.04	11.02	0.01	2.233	9.59	7.71	12.2	87.5	0.2	-4.96	0.75	0.75	3.28	2.2	0.005	0.77	0.0	0.05	14.35	0.00	2.121	11.27	0.75	13.5	86.4	0.1	-2.88	1.23	0.77	0.78	3.22	9724	1264	8	0	2	0	0	logfile
✔	7JLX	22383	2023-02-17	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	7PHK	13418	2023-02-25	2021-08-17	3.1	3.39	3.16	3.3	0.004	0.54	0.0	0.04	13.69	0.00	2.269	5.89	2.53	2.3	97.7	0.0	-0.88	0.53	0.62	2.92	3.3	0.003	0.62	0.0	0.04	15.47	0.00	2.127	9.17	0.24	2.6	97.4	0.0	0.42	3.65	0.69	0.83	3.19	25404	3140	16	0	32	0	0	logfile
✔	7SBK	24981	2023-02-26	2021-09-25	3.1	2.77	—	2.3	0.013	1.78	14.0	0.11	14.92	0.01	1.339	6.46	1.49	6.3	93.0	0.7	-1.92	0.83	0.80	3.47	2.2	0.004	0.76	0.0	0.05	16.26	0.00	2.099	11.55	0.52	6.0	93.8	0.2	-0.39	1.07	0.84	0.83	2.90	27417	3303	39	0	117	0	0	logfile
✔	7XoC	33344	2023-02-17	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.48	0.0	0.04	9.17	0.00	2.149	5.26	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.62	0.0	0.04	16.35	0.00	2.086	8.52	1.61	3.1	96.9	0.0	0.98	1.11	0.76	0.82	3.22	6432	786	5	0	5	0	0	logfile
✔	7UPX	26677	2023-02-17	2022-04-18	3.2	3.46	—	3.4	0.012	1.87	4.0	0.11	13.66	0.01	2.176	5.28	2.20	5.4	93.2	1.4	-0.66	0.64	0.88	3.81	3.4	0.003	0.67	0.0	0.04	14.97	0.00	2.087	6.73	0.18	4.5	95.4	0.2	0.33	0.49	0.63	0.87	3.31	4930	635	4	0	3	0	0	logfile
✔	6RDC	4813	2023-02-21	2019-04-12	3.2	3.06	—	3.2	0.013	1.07	1.0	0.06	13.88	0.01	1.864	5.69	0.41	5.2	94.6	0.2	-5.20	0.72	0.84	3.50	3.2	0.003	0.62	0.0	0.04	15.22	0.00	1.949	9.12	0.27	3.6	96.3	0.1	0.06	1.16	0.74	0.87	2.64	53776	7103	44	0	11	28	0	logfile
✘	6KNG	0731	2023-02-18	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✔	6RFR	4873	2023-02-25	2019-04-16	3.2	3.36	—	3.4	0.012	1.52	2.0	0.92	12.03	0.01	2.078	8.39	0.16	6.0	93.9	0.1	-3.68	0.74	0.81	2.59	3.4	0.008	1.50	0.0	0.28	15.65	0.00	2.076	10.04	0.35	4.0	95.9	0.0	-0.08	2.29	0.75	0.87	2.57	65934	8057	65	0	49	0	0	logfile
✔	7N1X	24126	2023-02-25	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	9.88	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.005	0.84	0.0	0.05	16.27	0.01	2.115	16.15	0.77	5.4	94.6	0.0	-1.23	0.73	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7VAK	31845	2023-02-27	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.8	0.004	0.68	0.0	0.05	14.06	0.00	2.126	11.26	0.00	4.7	95.3	0.0	-0.10	1.25	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile

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