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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TDG | 25828 | 2023-07-07 | 2021-12-31 | 3.8 | 4.00 | 3.85 | 3.8 | 0.086 | 0.81 | 1.0 | 0.04 | 13.97 | 0.00 | 0.831 | 7.84 | 0.28 | 6.6 | 93.4 | 0.1 | -0.49 | 0.83 | 0.79 | 0.99 | 3.8 | 0.056 | 3.18 | 114.0 | 0.16 | 19.71 | 0.02 | 1.714 | 88.48 | 3.87 | 38.2 | 59.5 | 2.3 | -7.40 | 1.18 | 0.86 | 0.86 | 1.36 | 117345 | 12936 | 8 | 0 | 3624 | 0 | 0 | logfile |
✔ | 7DF8 | 30662 | 2023-07-04 | 2020-11-06 | 3.03 | 3.18 | — | 3.3 | 0.006 | 0.88 | 0.0 | 0.06 | 13.34 | 0.02 | 1.986 | 10.20 | 0.26 | 4.8 | 95.2 | 0.0 | -4.03 | 0.55 | 0.81 | 2.66 | 3.3 | 0.002 | 0.56 | 0.0 | 0.04 | 15.17 | 0.00 | 2.230 | 3.77 | 0.26 | 3.8 | 96.2 | 0.0 | 0.48 | 1.55 | 0.60 | 0.85 | 2.22 | 7505 | 918 | 5 | 0 | 20 | 0 | 0 | logfile |
✘ | 7WLD | 32582 | 2023-07-09 | 2022-01-13 | 2.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19732 | 2393 | 11 | 0 | 29 | 0 | 0 | logfile |
✔ | 7D0A | 30528 | 2023-07-08 | 2020-09-09 | 4.0 | 4.18 | — | 4.0 | 0.021 | 1.53 | 0.0 | 0.15 | 17.85 | 0.01 | 2.101 | 29.59 | 9.93 | 11.4 | 87.2 | 1.4 | -5.59 | 0.74 | 0.78 | — | 4.0 | 0.004 | 0.82 | 0.0 | 0.04 | 17.20 | 0.00 | 2.160 | 14.85 | 0.80 | 10.3 | 89.6 | 0.1 | -2.46 | 1.37 | 0.74 | 0.79 | — | 17804 | 2374 | 14 | 0 | 4 | 0 | 0 | logfile |
✔ | 8FN0 | 29302 | 2023-07-04 | 2022-12-26 | 2.89 | 2.19 | 2.89 | 2.1 | 0.006 | 1.29 | 0.0 | 0.09 | 10.61 | 0.01 | 2.225 | 6.24 | 0.11 | 1.9 | 98.1 | 0.0 | 1.16 | 0.78 | 0.80 | 3.85 | 2.0 | 0.004 | 0.66 | 0.0 | 0.04 | 14.75 | 0.00 | 1.890 | 7.74 | 1.36 | 2.3 | 97.7 | 0.0 | 1.10 | 1.04 | 0.78 | 0.80 | 3.02 | 8502 | 1120 | 7 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oRN | 20175 | 2023-07-10 | 2019-04-30 | 4.05 | 4.51 | 4.01 | 4.4 | 0.008 | 1.14 | 1.0 | 0.07 | 10.58 | 0.01 | 2.257 | 4.29 | 0.62 | 7.4 | 92.4 | 0.2 | -4.42 | 0.66 | 0.85 | — | 4.4 | 0.004 | 0.76 | 0.0 | 0.05 | 11.69 | 0.00 | 2.196 | 8.49 | 0.05 | 7.4 | 92.6 | 0.1 | -2.04 | 0.64 | 0.66 | 0.85 | — | 20338 | 2418 | 39 | 0 | 101 | 0 | 0 | logfile |
✔ | 6FUW | 4225 | 2023-07-06 | 2018-02-28 | 3.07 | 3.17 | — | 3.2 | 0.010 | 0.98 | 0.0 | 0.06 | 10.27 | 0.01 | 2.193 | 10.90 | 0.00 | 11.8 | 88.2 | 0.0 | -4.10 | 0.72 | 0.81 | 4.71 | 3.2 | 0.002 | 0.60 | 0.0 | 0.04 | 14.89 | 0.00 | 2.109 | 8.09 | 0.07 | 5.5 | 94.5 | 0.0 | -1.41 | 1.63 | 0.72 | 0.82 | 3.25 | 13421 | 1665 | 5 | 8 | 3 | 0 | 0 | logfile |
✘ | 8AXN | 15702 | 2023-07-16 | 2022-08-31 | 3.34 | 3.51 | 3.30 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 9.93 | 0.00 | 2.125 | 6.78 | 3.52 | 5.4 | 94.6 | 0.0 | -0.25 | 0.76 | 0.84 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94656 | 11704 | 64 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PZR | 13736 | 2023-07-07 | 2021-10-13 | 3.0 | 3.57 | — | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.71 | 0.01 | 2.062 | 11.63 | 0.00 | 1.5 | 98.5 | 0.0 | 3.84 | 0.77 | 0.69 | 1.43 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 16.07 | 0.01 | 2.079 | 21.17 | 1.77 | 2.0 | 98.0 | 0.0 | 1.77 | 2.50 | 0.80 | 0.77 | 0.93 | 7404 | 935 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XAT | 33098 | 2023-07-04 | 2022-03-19 | 2.85 | 3.05 | 2.92 | 3.1 | 0.010 | 1.00 | 0.0 | 0.06 | 13.72 | 0.01 | 2.215 | 5.11 | 0.82 | 6.7 | 93.3 | 0.0 | -4.15 | 0.66 | 0.82 | 3.83 | 3.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.69 | 0.00 | 2.178 | 9.24 | 3.39 | 5.1 | 94.9 | 0.0 | -1.01 | 0.53 | 0.65 | 0.82 | 3.43 | 8470 | 1153 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZKi | 11250 | 2023-07-08 | 2020-06-30 | 2.8 | 2.89 | — | 2.8 | 0.009 | 1.05 | 0.0 | 1.03 | 11.89 | 0.01 | 2.233 | 5.21 | 0.06 | 3.7 | 96.2 | 0.1 | -2.73 | 0.75 | 0.87 | 4.58 | 2.8 | 0.008 | 1.58 | 0.0 | 0.31 | 15.96 | 0.00 | 2.086 | 10.71 | 1.96 | 3.2 | 96.8 | 0.0 | 0.81 | 1.20 | 0.75 | 0.88 | 3.58 | 67479 | 8163 | 70 | 0 | 46 | 0 | 0 | logfile |
✔ | 7VUZ | 32132 | 2023-07-04 | 2021-11-04 | 2.89 | 3.37 | — | 3.3 | 0.010 | 1.40 | 3.0 | 0.08 | 13.55 | 0.01 | 2.035 | 6.79 | 1.39 | 5.3 | 94.7 | 0.0 | -2.89 | 0.61 | 0.74 | 2.31 | 3.3 | 0.004 | 0.76 | 0.0 | 0.05 | 16.70 | 0.00 | 2.113 | 15.11 | 2.24 | 5.6 | 94.4 | 0.0 | -0.29 | 1.31 | 0.62 | 0.76 | 1.45 | 8584 | 1097 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7Y6i | 33641 | 2023-07-04 | 2022-06-20 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8176 | 938 | 8 | 0 | 37 | 6 | 0 | logfile |
✔ | 6QNT | 4608 | 2023-07-04 | 2019-02-12 | 3.5 | 3.70 | — | 3.7 | 0.004 | 0.85 | 0.0 | 0.05 | 13.95 | 0.01 | 2.329 | 2.96 | 0.15 | 7.7 | 92.3 | 0.0 | -4.25 | 0.77 | 0.83 | 3.32 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 15.74 | 0.00 | 2.130 | 9.85 | 0.77 | 6.7 | 93.3 | 0.0 | -2.06 | 0.53 | 0.73 | 0.81 | 2.95 | 5774 | 733 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FE8 | 4241 | 2023-07-06 | 2017-12-30 | 3.7 | 3.80 | 3.71 | 3.8 | 0.004 | 0.90 | 0.0 | 0.05 | 10.19 | 0.01 | 2.283 | 4.12 | 0.45 | 5.5 | 94.4 | 0.1 | -3.46 | 0.72 | 0.78 | 2.51 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.35 | 0.00 | 2.187 | 11.80 | 0.52 | 6.2 | 93.8 | 0.0 | 0.53 | 1.37 | 0.73 | 0.79 | 1.72 | 12479 | 1547 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T6V | 25729 | 2023-07-05 | 2021-12-14 | 3.1 | 2.67 | — | 3.2 | 0.011 | 1.26 | 3.0 | 0.09 | 12.33 | 0.01 | 2.047 | 7.55 | 0.10 | 2.1 | 97.9 | 0.0 | 1.19 | 0.76 | 0.81 | 2.45 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.29 | 0.00 | 2.190 | 8.77 | 0.62 | 1.9 | 98.1 | 0.0 | 0.85 | 0.50 | 0.77 | 0.84 | 2.04 | 8949 | 1142 | 7 | 0 | 1 | 0 | 0 | logfile |
✘ | 7L6U | 23208 | 2023-07-06 | 2020-12-23 | 3.3 | 3.73 | 3.39 | 3.7 | 0.009 | 0.79 | 0.0 | 0.05 | 14.09 | 0.01 | 2.365 | 6.06 | 0.72 | 8.7 | 91.3 | 0.0 | -1.06 | 0.71 | 0.83 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12675 | 1555 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iY2 | 9748 | 2023-07-08 | 2018-12-12 | 3.47 | 3.59 | — | 3.5 | 0.010 | 1.09 | 0.0 | 0.06 | 25.44 | 0.01 | 2.248 | 5.61 | 0.59 | 7.6 | 92.2 | 0.2 | -4.13 | 0.79 | 0.81 | 2.26 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 25.88 | 0.00 | 2.110 | 12.60 | 0.25 | 5.8 | 94.2 | 0.0 | 0.33 | 1.49 | 0.80 | 0.84 | 0.98 | 17088 | 1367 | 11 | 294 | 1 | 0 | 0 | logfile |
✔ | 7XAU | 33099 | 2023-07-04 | 2022-03-19 | 2.97 | 3.19 | 3.01 | 3.2 | 0.011 | 1.19 | 0.0 | 0.06 | 14.13 | 0.01 | 2.187 | 7.25 | 1.17 | 8.1 | 91.9 | 0.0 | -4.69 | 0.64 | 0.76 | 3.22 | 3.2 | 0.003 | 0.71 | 0.0 | 0.04 | 16.21 | 0.00 | 2.049 | 12.00 | 3.27 | 4.9 | 95.1 | 0.0 | -1.57 | 1.23 | 0.63 | 0.76 | 2.22 | 8443 | 1141 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7X1U | 32950 | 2023-07-04 | 2022-02-24 | 3.19 | 3.42 | — | 3.4 | 0.008 | 1.03 | 2.0 | 0.16 | 13.42 | 0.01 | 2.166 | 6.24 | 0.46 | 7.7 | 92.2 | 0.1 | -5.61 | 0.60 | 0.69 | 2.22 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 14.90 | 0.00 | 2.131 | 12.91 | 0.31 | 5.0 | 94.9 | 0.1 | -2.58 | 0.50 | 0.60 | 0.69 | 1.53 | 7483 | 1082 | 6 | 0 | 1 | 0 | 0 | logfile |