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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8GTD | 34250 | 2024-03-21 | 2022-09-08 | 4.7 | 4.27 | 4.25 | 4.2 | 0.014 | 2.16 | 0.0 | 0.00 | 5.49 | 0.01 | 2.285 | 3.73 | 0.00 | 8.4 | 90.0 | 1.6 | 0.41 | 0.50 | 0.44 | — | 4.2 | 0.004 | 0.93 | 0.0 | 0.00 | 6.20 | 0.00 | 2.228 | 4.76 | 0.00 | 19.1 | 80.2 | 0.7 | -2.63 | 1.26 | 0.52 | 0.51 | — | 29580 | 7392 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LF0 | 23296 | 2024-03-22 | 2021-01-15 | 3.68 | 2.09 | 3.76 | 3.7 | 0.008 | 1.10 | 0.0 | 0.06 | 10.18 | 0.01 | 2.157 | 7.39 | 1.09 | 11.4 | 87.8 | 0.8 | -4.41 | 0.51 | 0.54 | 1.30 | 3.7 | 0.005 | 0.98 | 4.0 | 0.05 | 14.62 | 0.01 | 2.072 | 20.98 | 3.54 | 11.3 | 88.5 | 0.2 | -2.42 | 0.94 | 0.52 | 0.55 | 0.83 | 34548 | 4542 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SBY | 24992 | 2024-03-21 | 2021-09-26 | 3.0 | 2.53 | 2.88 | 2.8 | 0.022 | 1.79 | 3.0 | 0.12 | 10.88 | 0.01 | 2.238 | 0.58 | 0.16 | 2.0 | 98.0 | 0.0 | 0.12 | 0.68 | 0.86 | 4.74 | 2.8 | 0.005 | 0.78 | 0.0 | 0.05 | 14.07 | 0.01 | 2.156 | 4.25 | 2.03 | 2.9 | 97.1 | 0.0 | -0.14 | 2.38 | 0.66 | 0.86 | 4.30 | 29314 | 3516 | 23 | 0 | 282 | 0 | 0 | logfile |
✔ | 6FKi | 4272 | 2024-03-24 | 2018-01-24 | 4.3 | 4.39 | 4.31 | 4.3 | 0.015 | 1.42 | 28.0 | 0.09 | 12.07 | 0.01 | 0.201 | 58.71 | 0.15 | 3.9 | 96.0 | 0.1 | -0.17 | 0.63 | 0.65 | — | 4.3 | 0.006 | 0.90 | 10.0 | 0.06 | 13.74 | 0.01 | 1.416 | 23.83 | 0.02 | 4.4 | 95.5 | 0.1 | -0.22 | 1.25 | 0.69 | 0.78 | — | 39231 | 5201 | 31 | 0 | 10 | 0 | 0 | logfile |
✘ | 6YP7 | 10865 | 2024-03-16 | 2020-04-15 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 71784 | 7002 | 77 | 0 | 325 | 0 | 0 | logfile |
✔ | 7M7G | 23712 | 2024-03-20 | 2021-03-28 | 4.1 | 4.36 | — | 4.2 | 0.012 | 1.67 | 59.0 | 0.10 | 19.69 | 0.01 | 1.751 | 14.96 | 18.86 | 9.1 | 90.9 | 0.0 | -4.21 | 0.69 | 0.51 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 13.46 | 0.00 | 2.083 | 19.78 | 0.00 | 6.0 | 94.0 | 0.1 | -1.44 | 2.54 | 0.82 | 0.76 | — | 26480 | 3557 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G3Q | 29708 | 2024-03-17 | 2023-02-08 | 2.3 | 3.07 | 2.34 | 2.8 | 0.014 | 1.71 | 3.0 | 0.09 | 18.86 | 0.01 | 2.222 | 0.91 | 0.21 | 3.2 | 96.4 | 0.4 | -0.93 | 0.86 | 0.94 | 6.55 | 2.8 | 0.006 | 0.86 | 0.0 | 0.05 | 13.90 | 0.00 | 2.153 | 8.79 | 0.72 | 2.9 | 96.9 | 0.2 | -0.17 | 0.93 | 0.78 | 0.90 | 5.70 | 18618 | 2266 | 38 | 0 | 96 | 0 | 0 | logfile |
✔ | 8T2U | 40988 | 2024-03-11 | 2023-06-06 | 3.1 | 3.94 | 3.08 | 3.5 | 0.014 | 1.65 | 0.0 | 0.08 | 20.64 | 0.01 | 1.807 | 30.14 | 4.62 | 8.1 | 91.6 | 0.2 | -2.18 | 0.85 | 0.77 | 1.42 | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 17.07 | 0.00 | 1.924 | 19.65 | 2.89 | 7.1 | 92.7 | 0.1 | -1.47 | 1.21 | 0.83 | 0.72 | 1.04 | 6552 | 822 | 8 | 0 | 21 | 2 | 0 | logfile |
✘ | 6YMX | 10847 | 2024-03-25 | 2020-04-10 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47034 | 5759 | 47 | 0 | 38 | 0 | 0 | logfile |
✔ | 6R84 | 4751 | 2024-03-18 | 2019-03-31 | 3.6 | 3.57 | — | 3.5 | 0.009 | 1.15 | 1.0 | 0.06 | 22.99 | 0.01 | 1.501 | 5.84 | 0.51 | 8.2 | 91.4 | 0.4 | -3.93 | 0.79 | 0.81 | 2.51 | 3.5 | 0.005 | 0.80 | 5.0 | 0.04 | 23.04 | 0.01 | 1.880 | 15.98 | 4.75 | 8.3 | 91.5 | 0.2 | -1.66 | 1.97 | 0.80 | 0.83 | 1.70 | 138804 | 7644 | 51 | 3671 | 45 | 0 | 0 | logfile |
✔ | 6SKi | 10225 | 2024-03-10 | 2019-08-15 | 2.6 | 2.97 | 2.57 | 2.9 | 0.004 | 0.72 | 0.0 | 0.04 | 16.20 | 0.00 | 2.210 | 8.64 | 1.29 | 1.6 | 98.4 | 0.0 | -0.80 | 0.63 | 0.83 | 4.83 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 16.78 | 0.00 | 2.246 | 7.84 | 1.29 | 2.5 | 97.5 | 0.0 | 0.82 | 0.50 | 0.64 | 0.84 | 4.52 | 4434 | 569 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XMZ | 33308 | 2024-03-21 | 2022-04-27 | 3.25 | 3.45 | 3.31 | 3.4 | 0.009 | 1.06 | 5.0 | 0.07 | 13.61 | 0.00 | 1.460 | 5.15 | 0.47 | 4.4 | 95.5 | 0.1 | -1.48 | 0.73 | 0.80 | 3.38 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 13.68 | 0.00 | 2.157 | 6.33 | 1.90 | 3.5 | 96.5 | 0.0 | -0.46 | 1.04 | 0.74 | 0.81 | 2.88 | 29203 | 3745 | 12 | 0 | 32 | 0 | 0 | logfile |
✔ | 7M7E | 23710 | 2024-03-17 | 2021-03-28 | 3.2 | 3.78 | — | 3.7 | 0.006 | 1.09 | 12.0 | 0.06 | 16.73 | 0.01 | 2.151 | 8.15 | 9.50 | 3.9 | 96.1 | 0.0 | -1.47 | 0.69 | 0.72 | 1.63 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.00 | 0.00 | 2.059 | 6.21 | 2.08 | 3.6 | 96.4 | 0.0 | 0.15 | 0.70 | 0.76 | 0.81 | 2.09 | 16677 | 2230 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2024-03-10 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 4.43 | 0.00 | 2.212 | 4.17 | 0.00 | 6.5 | 93.4 | 0.1 | 1.98 | 0.77 | 0.56 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VKT | 21229 | 2024-03-19 | 2020-01-22 | 2.72 | 3.21 | — | 3.1 | 0.006 | 0.80 | 0.0 | 0.17 | 14.60 | 0.01 | 1.442 | 19.82 | 0.00 | 2.6 | 97.4 | 0.0 | -1.19 | 0.73 | 0.83 | 2.87 | 3.1 | 0.003 | 0.69 | 0.0 | 0.07 | 15.78 | 0.00 | 1.972 | 5.73 | 2.00 | 2.7 | 97.3 | 0.0 | 1.54 | 0.52 | 0.71 | 0.84 | 2.63 | 24331 | 3122 | 6 | 0 | 24 | 0 | 0 | logfile |
✔ | 5ND9 | 3625 | 2024-03-19 | 2017-03-07 | 3.7 | 3.83 | — | 3.7 | 0.011 | 1.19 | 1.0 | 0.06 | 23.17 | 0.01 | 0.889 | 8.98 | 1.12 | 19.3 | 80.1 | 0.6 | -5.81 | 0.76 | 0.77 | 1.23 | 3.7 | 0.005 | 0.74 | 0.0 | 0.04 | 22.84 | 0.01 | 2.026 | 17.86 | 4.92 | 13.2 | 86.7 | 0.1 | -3.07 | 1.32 | 0.78 | 0.82 | 0.91 | 141051 | 5461 | 52 | 4569 | 0 | 0 | 0 | logfile |
✔ | 6ZXK | 11523 | 2024-03-24 | 2020-07-29 | 3.8 | 4.20 | — | 4.0 | 0.011 | 1.21 | 2.0 | 0.07 | 12.01 | 0.01 | 1.950 | 20.91 | 0.34 | 7.9 | 91.7 | 0.4 | -2.91 | 0.70 | 0.76 | 1.72 | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 14.97 | 0.00 | 2.139 | 13.30 | 3.23 | 5.0 | 95.0 | 0.0 | -0.31 | 1.28 | 0.68 | 0.75 | 1.69 | 42292 | 5772 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MUV | 9257 | 2024-03-15 | 2018-10-23 | 3.8 | 4.21 | 3.84 | 4.1 | 0.008 | 1.22 | 6.0 | 0.07 | 14.93 | 0.01 | 2.233 | 7.34 | 1.10 | 9.1 | 90.7 | 0.1 | -3.64 | 0.79 | 0.81 | 1.15 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 16.80 | 0.00 | 2.090 | 14.77 | 3.36 | 6.0 | 94.0 | 0.0 | -0.30 | 0.73 | 0.78 | 0.81 | 0.91 | 71112 | 8796 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CEo | 16611 | 2024-03-12 | 2023-02-02 | 3.6 | 3.26 | 3.48 | 2.9 | 0.004 | 0.75 | 1.0 | 0.05 | 16.42 | 0.01 | 2.091 | 6.70 | 0.00 | 2.9 | 97.1 | 0.0 | -0.68 | 0.73 | 0.56 | 1.54 | 2.9 | 0.005 | 0.65 | 0.0 | 0.04 | 17.82 | 0.00 | 1.893 | 14.64 | 1.52 | 3.2 | 96.8 | 0.0 | 0.59 | 0.66 | 0.68 | 0.52 | 1.44 | 113584 | 13074 | 66 | 418 | 19 | 0 | 0 | logfile |
✔ | 7LD0 | 23278 | 2024-03-23 | 2021-01-12 | 3.1 | 2.33 | 3.20 | 1.9 | 0.006 | 0.65 | 0.0 | 0.04 | 13.28 | 0.01 | 2.229 | 9.07 | 0.00 | 6.1 | 93.9 | 0.0 | -2.06 | 0.76 | 0.75 | 1.84 | 2.0 | 0.004 | 0.73 | 0.0 | 0.04 | 16.96 | 0.00 | 1.984 | 10.03 | 2.27 | 4.6 | 95.4 | 0.0 | -0.32 | 0.59 | 0.77 | 0.77 | 0.88 | 36976 | 4720 | 8 | 0 | 0 | 0 | 0 | logfile |