Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDG	25828	2023-07-07	2021-12-31	3.8	4.00	3.85	3.8	0.086	0.81	1.0	0.04	13.97	0.00	0.831	7.84	0.28	6.6	93.4	0.1	-0.49	0.83	0.79	0.99	3.8	0.056	3.18	114.0	0.16	19.71	0.02	1.714	88.48	3.87	38.2	59.5	2.3	-7.40	1.18	0.86	0.86	1.36	117345	12936	8	0	3624	0	0	logfile
✔	7DF8	30662	2023-07-04	2020-11-06	3.03	3.18	—	3.3	0.006	0.88	0.0	0.06	13.34	0.02	1.986	10.20	0.26	4.8	95.2	0.0	-4.03	0.55	0.81	2.66	3.3	0.002	0.56	0.0	0.04	15.17	0.00	2.230	3.77	0.26	3.8	96.2	0.0	0.48	1.55	0.60	0.85	2.22	7505	918	5	0	20	0	0	logfile
✘	7WLD	32582	2023-07-09	2022-01-13	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19732	2393	11	0	29	0	0	logfile
✔	7D0A	30528	2023-07-08	2020-09-09	4.0	4.18	—	4.0	0.021	1.53	0.0	0.15	17.85	0.01	2.101	29.59	9.93	11.4	87.2	1.4	-5.59	0.74	0.78	—	4.0	0.004	0.82	0.0	0.04	17.20	0.00	2.160	14.85	0.80	10.3	89.6	0.1	-2.46	1.37	0.74	0.79	—	17804	2374	14	0	4	0	0	logfile
✔	8FN0	29302	2023-07-04	2022-12-26	2.89	2.19	2.89	2.1	0.006	1.29	0.0	0.09	10.61	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.004	0.66	0.0	0.04	14.75	0.00	1.890	7.74	1.36	2.3	97.7	0.0	1.10	1.04	0.78	0.80	3.02	8502	1120	7	0	1	0	0	logfile
✔	6oRN	20175	2023-07-10	2019-04-30	4.05	4.51	4.01	4.4	0.008	1.14	1.0	0.07	10.58	0.01	2.257	4.29	0.62	7.4	92.4	0.2	-4.42	0.66	0.85	—	4.4	0.004	0.76	0.0	0.05	11.69	0.00	2.196	8.49	0.05	7.4	92.6	0.1	-2.04	0.64	0.66	0.85	—	20338	2418	39	0	101	0	0	logfile
✔	6FUW	4225	2023-07-06	2018-02-28	3.07	3.17	—	3.2	0.010	0.98	0.0	0.06	10.27	0.01	2.193	10.90	0.00	11.8	88.2	0.0	-4.10	0.72	0.81	4.71	3.2	0.002	0.60	0.0	0.04	14.89	0.00	2.109	8.09	0.07	5.5	94.5	0.0	-1.41	1.63	0.72	0.82	3.25	13421	1665	5	8	3	0	0	logfile
✘	8AXN	15702	2023-07-16	2022-08-31	3.34	3.51	3.30	3.5	0.003	0.58	0.0	0.04	9.93	0.00	2.125	6.78	3.52	5.4	94.6	0.0	-0.25	0.76	0.84	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94656	11704	64	0	0	0	0	logfile
✔	7PZR	13736	2023-07-07	2021-10-13	3.0	3.57	—	3.3	0.004	0.71	0.0	0.04	12.71	0.01	2.062	11.63	0.00	1.5	98.5	0.0	3.84	0.77	0.69	1.43	3.3	0.005	0.89	0.0	0.05	16.07	0.01	2.079	21.17	1.77	2.0	98.0	0.0	1.77	2.50	0.80	0.77	0.93	7404	935	1	0	0	0	0	logfile
✔	7XAT	33098	2023-07-04	2022-03-19	2.85	3.05	2.92	3.1	0.010	1.00	0.0	0.06	13.72	0.01	2.215	5.11	0.82	6.7	93.3	0.0	-4.15	0.66	0.82	3.83	3.1	0.003	0.65	0.0	0.04	15.69	0.00	2.178	9.24	3.39	5.1	94.9	0.0	-1.01	0.53	0.65	0.82	3.43	8470	1153	6	0	0	0	0	logfile
✔	6ZKi	11250	2023-07-08	2020-06-30	2.8	2.89	—	2.8	0.009	1.05	0.0	1.03	11.89	0.01	2.233	5.21	0.06	3.7	96.2	0.1	-2.73	0.75	0.87	4.58	2.8	0.008	1.58	0.0	0.31	15.96	0.00	2.086	10.71	1.96	3.2	96.8	0.0	0.81	1.20	0.75	0.88	3.58	67479	8163	70	0	46	0	0	logfile
✔	7VUZ	32132	2023-07-04	2021-11-04	2.89	3.37	—	3.3	0.010	1.40	3.0	0.08	13.55	0.01	2.035	6.79	1.39	5.3	94.7	0.0	-2.89	0.61	0.74	2.31	3.3	0.004	0.76	0.0	0.05	16.70	0.00	2.113	15.11	2.24	5.6	94.4	0.0	-0.29	1.31	0.62	0.76	1.45	8584	1097	6	0	1	0	0	logfile
✘	7Y6i	33641	2023-07-04	2022-06-20	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8176	938	8	0	37	6	0	logfile
✔	6QNT	4608	2023-07-04	2019-02-12	3.5	3.70	—	3.7	0.004	0.85	0.0	0.05	13.95	0.01	2.329	2.96	0.15	7.7	92.3	0.0	-4.25	0.77	0.83	3.32	3.7	0.003	0.63	0.0	0.04	15.74	0.00	2.130	9.85	0.77	6.7	93.3	0.0	-2.06	0.53	0.73	0.81	2.95	5774	733	4	0	0	0	0	logfile
✔	6FE8	4241	2023-07-06	2017-12-30	3.7	3.80	3.71	3.8	0.004	0.90	0.0	0.05	10.19	0.01	2.283	4.12	0.45	5.5	94.4	0.1	-3.46	0.72	0.78	2.51	3.7	0.003	0.68	0.0	0.04	15.35	0.00	2.187	11.80	0.52	6.2	93.8	0.0	0.53	1.37	0.73	0.79	1.72	12479	1547	4	0	0	0	0	logfile
✔	7T6V	25729	2023-07-05	2021-12-14	3.1	2.67	—	3.2	0.011	1.26	3.0	0.09	12.33	0.01	2.047	7.55	0.10	2.1	97.9	0.0	1.19	0.76	0.81	2.45	3.2	0.003	0.64	0.0	0.04	15.29	0.00	2.190	8.77	0.62	1.9	98.1	0.0	0.85	0.50	0.77	0.84	2.04	8949	1142	7	0	1	0	0	logfile
✘	7L6U	23208	2023-07-06	2020-12-23	3.3	3.73	3.39	3.7	0.009	0.79	0.0	0.05	14.09	0.01	2.365	6.06	0.72	8.7	91.3	0.0	-1.06	0.71	0.83	3.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12675	1555	5	0	0	0	0	logfile
✔	6iY2	9748	2023-07-08	2018-12-12	3.47	3.59	—	3.5	0.010	1.09	0.0	0.06	25.44	0.01	2.248	5.61	0.59	7.6	92.2	0.2	-4.13	0.79	0.81	2.26	3.5	0.003	0.64	0.0	0.04	25.88	0.00	2.110	12.60	0.25	5.8	94.2	0.0	0.33	1.49	0.80	0.84	0.98	17088	1367	11	294	1	0	0	logfile
✔	7XAU	33099	2023-07-04	2022-03-19	2.97	3.19	3.01	3.2	0.011	1.19	0.0	0.06	14.13	0.01	2.187	7.25	1.17	8.1	91.9	0.0	-4.69	0.64	0.76	3.22	3.2	0.003	0.71	0.0	0.04	16.21	0.00	2.049	12.00	3.27	4.9	95.1	0.0	-1.57	1.23	0.63	0.76	2.22	8443	1141	6	0	2	0	0	logfile
✔	7X1U	32950	2023-07-04	2022-02-24	3.19	3.42	—	3.4	0.008	1.03	2.0	0.16	13.42	0.01	2.166	6.24	0.46	7.7	92.2	0.1	-5.61	0.60	0.69	2.22	3.4	0.003	0.71	0.0	0.04	14.90	0.00	2.131	12.91	0.31	5.0	94.9	0.1	-2.58	0.50	0.60	0.69	1.53	7483	1082	6	0	1	0	0	logfile

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