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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8SA3 | 40263 | 2023-12-08 | 2023-03-31 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9268 | 0 | 4 | 420 | 2 | 0 | 0 | logfile |
✔ | 7DRT | 30827 | 2023-12-08 | 2020-12-29 | 2.2 | 2.32 | — | 2.3 | 0.011 | 1.32 | 9.0 | 0.09 | 13.15 | 0.01 | 2.064 | 5.88 | 2.38 | 5.4 | 94.1 | 0.5 | -0.76 | 0.39 | 0.58 | 3.02 | 2.3 | 0.004 | 0.71 | 0.0 | 0.04 | 17.01 | 0.01 | 2.242 | 10.65 | 5.31 | 6.8 | 93.1 | 0.1 | -0.39 | 1.10 | 0.64 | 0.77 | 2.65 | 6849 | 830 | 7 | 0 | 7 | 10 | 0 | logfile |
✔ | 8EA3 | 27971 | 2023-12-08 | 2022-08-27 | 3.7 | 3.91 | 3.69 | 3.8 | 0.013 | 1.65 | 12.0 | 0.09 | 18.56 | 0.02 | 1.162 | 11.38 | 0.29 | 2.4 | 97.4 | 0.2 | -1.04 | 0.75 | 0.70 | 2.00 | 3.8 | 0.004 | 0.62 | 0.0 | 0.04 | 20.12 | 0.00 | 1.862 | 9.49 | 0.33 | 2.9 | 97.0 | 0.0 | 1.32 | 1.79 | 0.82 | 0.83 | 1.38 | 55955 | 5618 | 44 | 495 | 26 | 0 | 0 | logfile |
✔ | 6QC8 | 4500 | 2023-12-09 | 2018-12-27 | 4.2 | 4.28 | 4.19 | 4.2 | 0.008 | 1.26 | 0.0 | 1.03 | 11.93 | 0.01 | 2.069 | 7.62 | 0.57 | 11.9 | 88.0 | 0.1 | -4.06 | 0.63 | 0.76 | — | 4.2 | 0.009 | 1.72 | 0.0 | 0.31 | 13.74 | 0.01 | 2.060 | 18.98 | 0.01 | 11.1 | 88.9 | 0.0 | -1.51 | 1.73 | 0.64 | 0.78 | — | 65394 | 8092 | 58 | 0 | 18 | 0 | 0 | logfile |
✔ | 8QJY | 18454 | 2023-12-08 | 2023-09-14 | 3.5 | 4.18 | 3.43 | 3.7 | 0.003 | 0.61 | 0.0 | 0.05 | 13.67 | 0.00 | 1.682 | 8.80 | 0.14 | 2.7 | 97.3 | 0.0 | -0.59 | 0.85 | 0.80 | 3.37 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.53 | 0.00 | 2.131 | 14.04 | 0.56 | 2.8 | 97.2 | 0.0 | -0.11 | 1.62 | 0.86 | 0.83 | 2.71 | 6287 | 798 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A9A | 15274 | 2023-12-10 | 2022-06-28 | 3.3 | 3.59 | 3.34 | 3.6 | 0.003 | 0.67 | 0.0 | 0.04 | 18.00 | 0.00 | 2.116 | 12.52 | 0.14 | 10.5 | 89.1 | 0.4 | -1.45 | 0.63 | 0.58 | 1.12 | 3.6 | 0.004 | 0.78 | 0.0 | 0.04 | 18.22 | 0.00 | 2.151 | 16.93 | 0.43 | 10.9 | 88.8 | 0.3 | -2.17 | 1.47 | 0.70 | 0.69 | 1.25 | 12772 | 1618 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NS6 | 12561 | 2023-12-09 | 2021-03-05 | 3.18 | 4.09 | — | 3.2 | 0.004 | 0.85 | 25.0 | 0.06 | 13.26 | 0.00 | 2.006 | 12.56 | 0.00 | 2.3 | 97.6 | 0.1 | 0.71 | 0.87 | 0.81 | 1.73 | 3.2 | 0.002 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.111 | 10.70 | 0.21 | 3.2 | 96.8 | 0.0 | 0.28 | 1.52 | 0.89 | 0.86 | 2.03 | 55899 | 7109 | 20 | 0 | 52 | 0 | 0 | logfile |
✔ | 8E14 | 27823 | 2023-12-09 | 2022-08-09 | 3.36 | 4.87 | 3.36 | 3.5 | 0.007 | 1.12 | 1.0 | 0.08 | 24.72 | 0.01 | 2.182 | 16.48 | 0.41 | 17.7 | 82.3 | 0.0 | -2.84 | 0.92 | 0.86 | 0.70 | 3.5 | 0.003 | 0.70 | 0.0 | 0.04 | 24.50 | 0.00 | 2.192 | 14.49 | 0.21 | 16.4 | 83.6 | 0.0 | -2.49 | 0.32 | 0.92 | 0.86 | 0.81 | 12442 | 1161 | 16 | 160 | 2 | 0 | 0 | logfile |
✔ | 7XoL | 33351 | 2023-12-07 | 2022-05-01 | 3.26 | 4.02 | 3.37 | 3.4 | 0.002 | 0.49 | 0.0 | 0.04 | 13.50 | 0.00 | 2.224 | 10.95 | 0.00 | 0.5 | 99.5 | 0.0 | 2.40 | 0.89 | 0.88 | 1.73 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.73 | 0.00 | 2.100 | 12.34 | 0.11 | 1.1 | 98.9 | 0.0 | 2.20 | 0.25 | 0.90 | 0.90 | 1.60 | 53970 | 7336 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WP0 | 32665 | 2023-12-07 | 2022-01-22 | 3.71 | 3.94 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 14.47 | 0.01 | 2.281 | 5.81 | 0.59 | 8.5 | 91.5 | 0.0 | -4.57 | 0.65 | 0.80 | 3.41 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.06 | 0.00 | 2.179 | 11.46 | 0.00 | 8.3 | 91.7 | 0.0 | -2.26 | 0.57 | 0.64 | 0.79 | 2.40 | 3174 | 407 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ZK5 | 14755 | 2023-12-08 | 2022-04-12 | 2.6 | 2.85 | 2.69 | 2.9 | 0.010 | 1.03 | 6.0 | 0.07 | 14.22 | 0.01 | 2.061 | 9.01 | 0.10 | 2.1 | 97.8 | 0.1 | 1.16 | 0.67 | 0.84 | 3.06 | 2.9 | 0.004 | 0.58 | 0.0 | 0.04 | 16.50 | 0.00 | 1.924 | 6.95 | 1.04 | 2.3 | 97.7 | 0.0 | 1.83 | 0.54 | 0.60 | 0.85 | 3.10 | 9435 | 1177 | 1 | 0 | 10 | 33 | 0 | logfile |
✔ | 7ZKB | 14761 | 2023-12-08 | 2022-04-12 | 4.7 | 4.80 | 4.47 | 4.7 | 0.011 | 1.06 | 2.0 | 0.06 | 15.65 | 0.00 | 2.224 | 16.22 | 0.21 | 6.9 | 93.1 | 0.0 | 0.07 | 0.56 | 0.74 | — | 4.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.13 | 0.00 | 2.160 | 14.18 | 0.00 | 5.7 | 94.3 | 0.0 | 0.13 | 0.56 | 0.56 | 0.76 | — | 9043 | 1158 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 8G1A | 29665 | 2023-12-10 | 2023-02-01 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13725 | 1574 | 7 | 0 | 37 | 0 | 0 | logfile |
✔ | 8CKZ | 16707 | 2023-12-10 | 2023-02-16 | 3.07 | 3.27 | 3.09 | 3.2 | 0.005 | 0.90 | 0.0 | 0.05 | 12.35 | 0.01 | 1.966 | 3.43 | 0.00 | 1.1 | 98.9 | 0.0 | -1.16 | 0.50 | 0.80 | 4.33 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 16.14 | 0.00 | 2.066 | 8.92 | 0.34 | 1.0 | 99.0 | 0.0 | 1.65 | 1.10 | 0.52 | 0.82 | 3.89 | 13910 | 1800 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X7U | 33048 | 2023-12-08 | 2022-03-10 | 3.77 | 3.98 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.06 | 13.55 | 0.01 | 2.276 | 4.03 | 0.27 | 7.9 | 92.0 | 0.1 | -4.10 | 0.55 | 0.69 | 3.28 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 15.55 | 0.00 | 2.168 | 10.23 | 0.68 | 6.7 | 93.3 | 0.0 | -2.14 | 0.98 | 0.71 | 0.86 | 2.68 | 6862 | 878 | 8 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WP2 | 32667 | 2023-12-07 | 2022-01-22 | 3.52 | 3.71 | — | 3.7 | 0.007 | 0.91 | 0.0 | 0.06 | 13.82 | 0.01 | 2.267 | 5.13 | 0.28 | 8.7 | 91.3 | 0.0 | -4.60 | 0.67 | 0.82 | 3.20 | 3.7 | 0.004 | 0.66 | 0.0 | 0.04 | 15.29 | 0.00 | 2.125 | 11.81 | 0.57 | 9.1 | 90.9 | 0.0 | -2.93 | 0.94 | 0.68 | 0.82 | 2.88 | 3299 | 422 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XUM | 33474 | 2023-12-08 | 2022-05-19 | 3.8 | 3.49 | 3.48 | 3.7 | 0.002 | 0.57 | 0.0 | 0.04 | 13.82 | 0.00 | 1.938 | 6.52 | 0.00 | 3.7 | 96.3 | 0.0 | -0.15 | 0.56 | 0.76 | 1.43 | 3.7 | 0.003 | 0.60 | 0.0 | 0.04 | 15.91 | 0.00 | 2.119 | 9.07 | 0.44 | 4.1 | 95.9 | 0.0 | 0.17 | 0.35 | 0.57 | 0.76 | 0.69 | 6155 | 816 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8D7E | 27228 | 2023-12-10 | 2022-06-07 | 2.93 | 3.17 | 2.98 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.95 | 0.00 | 2.257 | 5.40 | 0.70 | 2.9 | 97.1 | 0.0 | -2.25 | 0.67 | 0.81 | 3.32 | 3.1 | 0.005 | 0.68 | 0.0 | 0.05 | 15.94 | 0.00 | 2.231 | 5.92 | 4.90 | 4.6 | 95.4 | 0.0 | -0.24 | 1.59 | 0.67 | 0.86 | 3.60 | 8959 | 1143 | 9 | 0 | 8 | 0 | 0 | logfile |
✔ | 6BUZ | 7293 | 2023-12-09 | 2017-12-11 | 3.92 | 4.51 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.05 | 27.46 | 0.01 | 2.308 | 8.08 | 0.00 | 5.6 | 94.4 | 0.0 | -5.03 | 0.85 | 0.86 | 3.06 | 4.2 | 0.005 | 0.77 | 0.0 | 0.04 | 28.45 | 0.00 | 2.062 | 22.00 | 0.65 | 5.4 | 94.6 | 0.0 | -0.18 | 1.28 | 0.85 | 0.86 | 1.69 | 12509 | 878 | 11 | 290 | 0 | 0 | 0 | logfile |
✘ | 7X7V | 33049 | 2023-12-08 | 2022-03-10 | 3.83 | 4.04 | — | 4.0 | 0.006 | 0.98 | 1.0 | 0.06 | 13.94 | 0.01 | 2.274 | 5.37 | 0.41 | 7.1 | 92.8 | 0.1 | -3.88 | 0.57 | 0.71 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6876 | 873 | 9 | 0 | 4 | 0 | 0 | logfile |