Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W5V	21549	2022-07-04	2020-03-13	4.0	4.11	—	4.0	0.008	1.35	4.0	0.18	17.76	0.01	1.979	62.59	9.99	7.0	92.3	0.7	-2.21	0.63	0.75	—	4.0	0.005	0.89	0.0	0.05	17.23	0.01	2.042	17.89	0.70	6.3	93.7	0.0	-0.54	0.86	0.64	0.78	—	10586	1307	9	0	24	0	0	logfile
✘	6VXM	21444	2022-07-04	2020-02-22	3.06	3.76	—	3.4	0.018	1.02	0.0	0.05	12.84	0.00	2.208	5.67	0.00	3.9	96.1	0.0	-2.02	0.75	0.81	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15064	1939	14	0	21	0	0	logfile
✔	6YYT	11007	2022-07-03	2020-05-06	2.9	3.28	3.09	3.2	0.003	0.47	0.0	0.04	14.59	0.00	2.258	2.82	0.36	2.9	97.1	0.0	-0.98	0.80	0.82	2.65	3.2	0.002	0.56	0.0	0.04	15.90	0.00	2.173	8.64	2.35	2.6	97.4	0.0	1.18	0.45	0.79	0.85	2.79	11375	1298	9	54	2	0	0	logfile
✔	6KSW	0775	2022-07-03	2019-08-26	3.6	3.70	—	3.7	0.008	1.08	0.0	0.06	11.37	0.01	2.245	6.68	0.25	5.4	94.6	0.0	-5.90	0.59	0.80	2.51	3.7	0.006	0.85	0.0	0.04	15.51	0.01	2.109	15.77	0.59	4.9	95.1	0.0	0.07	1.39	0.59	0.80	1.37	11661	1539	3	0	0	0	0	logfile
✔	6LYP	30017	2022-07-04	2020-02-15	3.3	3.12	3.20	3.5	0.011	1.35	0.0	0.08	11.79	0.01	2.148	8.25	1.40	9.8	90.2	0.0	-6.19	0.50	0.70	2.83	3.5	0.004	0.78	0.0	0.05	14.69	0.00	2.222	12.77	0.43	9.1	90.9	0.0	-3.31	1.22	0.56	0.74	2.06	15169	2009	7	0	0	0	0	logfile
✔	6W5R	21545	2022-07-04	2020-03-13	3.6	3.75	—	3.7	0.015	2.09	7.0	0.18	15.36	0.01	2.053	4.99	3.86	6.7	92.6	0.7	-3.31	0.61	0.75	2.23	3.7	0.011	1.26	1.0	0.05	16.26	0.00	1.771	11.45	0.10	6.1	93.6	0.3	-0.31	0.48	0.62	0.76	1.80	9629	1194	6	0	20	0	0	logfile
✔	6LRS	0960	2022-07-06	2020-01-16	3.37	2.99	—	3.4	0.006	1.04	0.0	0.06	10.05	0.01	2.260	10.82	0.38	6.7	93.3	0.0	-5.21	0.63	0.74	2.94	3.4	0.011	1.17	1.0	0.05	15.43	0.01	2.080	20.08	0.61	5.3	94.7	0.0	-2.03	0.74	0.67	0.78	2.54	30156	3832	12	0	0	0	0	logfile
✔	6WGE	21663	2022-07-04	2020-04-05	3.9	4.05	—	4.0	0.007	0.99	0.0	0.06	18.97	0.01	1.921	6.69	0.15	8.3	91.6	0.0	-2.35	0.74	0.85	1.35	3.9	0.003	0.64	0.0	0.04	20.06	0.00	1.935	9.77	0.29	5.0	95.0	0.0	1.23	1.43	0.74	0.84	1.11	20194	2280	8	86	4	0	0	logfile
✔	6W5S	21546	2022-07-04	2020-03-13	3.0	3.15	—	3.1	0.004	0.80	1.0	0.13	15.93	0.01	1.946	31.13	2.70	7.6	92.0	0.4	-3.24	0.67	0.81	2.46	3.1	0.004	0.74	0.0	0.04	17.22	0.01	2.234	7.81	1.25	5.8	94.0	0.2	0.11	0.52	0.66	0.81	2.41	9700	1194	6	0	21	0	0	logfile
✔	6W4X	21540	2022-07-04	2020-03-11	3.6	3.70	3.62	3.7	0.004	0.65	0.0	0.04	15.36	0.00	1.869	11.81	0.05	6.0	94.0	0.0	-3.25	0.66	0.78	1.98	3.7	0.003	0.67	0.0	0.04	17.30	0.00	1.994	11.41	0.42	4.7	95.3	0.0	-0.54	0.45	0.69	0.79	1.66	17678	2190	10	1	6	4	0	logfile
✘	6VCB	21147	2022-07-03	2019-12-20	3.3	3.48	—	3.7	0.006	1.00	0.0	0.06	11.47	0.01	1.326	6.63	0.85	5.0	95.0	0.0	-4.29	0.59	0.75	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9074	1158	7	0	1	0	0	logfile
✔	6UZY	20964	2022-07-04	2019-11-15	3.38	3.52	—	3.5	0.012	1.10	7.0	0.07	15.17	0.01	2.265	6.91	0.00	2.6	97.4	0.0	-3.44	0.66	0.82	2.53	3.5	0.002	0.50	0.0	0.04	15.49	0.00	2.289	6.04	0.06	2.2	97.8	0.0	1.66	0.33	0.63	0.81	1.84	16212	1946	14	0	21	0	0	logfile
✔	6V6D	21071	2022-07-03	2019-12-05	3.77	3.87	—	3.8	0.005	0.95	0.0	0.06	13.31	0.01	2.280	6.03	0.00	2.0	98.0	0.0	-2.17	0.63	0.85	3.10	3.8	0.003	0.70	0.0	0.04	16.27	0.00	2.193	7.04	0.38	2.3	97.7	0.0	1.45	0.67	0.62	0.85	2.99	11739	1463	7	0	0	0	0	logfile
✔	6LRR	0959	2022-07-07	2020-01-16	3.37	3.45	—	3.4	0.014	1.22	0.0	0.07	11.04	0.01	2.274	9.44	0.52	7.6	92.3	0.1	-5.11	0.71	0.84	3.59	3.4	0.013	1.17	5.0	0.05	15.04	0.01	1.751	18.91	0.22	6.6	93.4	0.0	-2.05	0.56	0.71	0.81	2.54	43706	5494	24	0	0	0	0	logfile
✔	6VXP	21447	2022-07-04	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.9	0.005	0.69	0.0	0.04	13.62	0.00	2.294	5.76	0.93	2.7	97.3	0.0	2.73	1.77	0.75	0.84	2.19	14819	1939	7	0	0	0	0	logfile
✔	7BP3	30143	2022-07-03	2020-03-21	3.8	4.06	—	4.1	0.007	1.05	0.0	0.06	16.16	0.01	2.235	6.34	0.00	7.4	92.6	0.0	-4.77	0.48	0.75	0.86	4.1	0.015	1.50	1.0	0.05	18.19	0.01	2.076	23.01	0.78	5.4	94.6	0.0	-0.33	1.30	0.50	0.74	1.14	6080	788	2	0	0	0	0	logfile
✔	6TGC	10498	2022-07-07	2019-11-15	4.1	4.96	—	4.1	0.016	1.86	2.0	0.08	20.20	0.01	1.835	102.01	15.44	22.0	76.1	1.9	-5.63	0.71	0.56	—	4.0	0.010	1.25	0.0	0.06	14.68	0.01	1.927	50.23	0.20	13.2	86.5	0.3	-2.23	1.26	0.73	0.59	—	33282	3806	6	0	808	0	0	logfile
✔	6VHH	21205	2022-07-04	2020-01-09	2.97	3.96	2.99	3.5	0.015	1.06	1.0	0.18	13.82	0.01	2.053	12.17	0.95	7.8	92.0	0.2	-2.75	0.84	0.78	3.32	3.5	0.006	0.77	0.0	0.05	15.16	0.00	2.128	10.02	2.17	5.8	94.2	0.0	-0.61	1.23	0.85	0.84	3.14	14219	1821	8	0	15	0	0	logfile
✔	6YAE	10747	2022-07-04	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.86	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.72	0.0	0.04	16.32	0.01	2.069	12.09	0.39	5.2	94.8	0.1	0.47	1.26	0.76	0.83	1.07	13707	1717	4	0	0	0	0	logfile
✔	6V0i	20999	2022-07-04	2019-11-18	3.43	3.14	—	3.1	0.007	1.18	0.0	0.07	10.96	0.01	2.274	4.28	0.00	1.4	98.6	0.0	-2.32	0.77	0.82	2.98	3.1	0.007	0.79	0.0	0.05	15.18	0.01	2.143	11.30	0.28	3.9	96.1	0.0	-1.46	0.84	0.81	0.87	2.96	15942	2106	6	0	0	0	0	logfile

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