Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ui0	26521	2023-04-25	2022-03-28	3.4	3.51	3.43	3.6	0.008	0.81	0.0	0.05	13.94	0.01	2.052	14.18	0.00	5.3	94.7	0.0	-1.38	0.81	0.82	2.16	3.6	0.004	0.63	0.0	0.04	15.79	0.00	2.121	11.79	0.29	3.9	96.1	0.0	-0.88	1.35	0.83	0.86	2.68	19203	2415	9	0	0	0	0	logfile
✘	7WDB	32436	2023-04-26	2021-12-21	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22400	2660	8	0	28	0	0	logfile
✔	7AF3	11751	2023-04-24	2020-09-19	2.82	3.14	2.89	3.0	0.010	0.86	3.0	0.05	14.06	0.02	1.884	7.81	0.87	2.6	97.4	0.0	-0.44	0.82	0.88	2.69	3.0	0.004	0.68	0.0	0.04	15.38	0.01	1.904	9.47	3.25	3.2	96.7	0.1	0.50	0.59	0.83	0.90	2.44	18580	1111	11	456	52	0	0	logfile
✔	7PT6	13619	2023-04-28	2021-09-26	3.2	3.12	—	3.1	0.006	1.06	30.0	0.06	14.96	0.01	1.718	12.07	0.34	3.2	96.8	0.0	-0.49	0.71	0.82	2.72	3.1	0.003	0.54	0.0	0.04	16.37	0.00	1.937	8.11	0.16	2.8	97.2	0.0	0.45	1.51	0.71	0.86	2.62	74358	9282	34	0	52	0	0	logfile
✘	8ERA	28551	2023-04-28	2022-10-11	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29054	3644	6	0	2	0	0	logfile
✔	6W6G	21554	2023-04-28	2020-03-16	3.1	3.46	—	3.3	0.006	0.79	0.0	0.05	15.45	0.00	2.131	10.22	0.66	11.5	88.3	0.2	-4.32	0.84	0.86	2.18	3.3	0.005	0.73	0.0	0.05	16.61	0.00	2.124	8.55	1.01	10.4	89.5	0.1	-1.37	2.22	0.83	0.87	2.02	27581	3506	13	0	38	0	0	logfile
✔	6RWo	10044	2023-04-24	2019-06-05	3.05	3.20	3.05	3.2	0.013	0.82	0.0	0.05	17.07	0.01	1.994	2.29	4.10	3.3	96.7	0.0	-3.00	0.67	0.83	3.08	3.2	0.005	0.63	0.0	0.04	19.19	0.00	1.768	5.91	0.46	3.6	96.4	0.0	0.08	0.55	0.73	0.85	2.98	18366	2076	26	86	16	6	0	logfile
✔	7XM1	33289	2023-04-21	2022-04-24	3.96	3.41	3.91	4.0	0.002	0.43	0.0	0.04	15.16	0.00	2.503	2.22	0.00	3.3	96.7	0.0	2.33	0.73	0.81	1.85	3.9	0.003	0.56	0.0	0.04	18.87	0.00	2.214	4.30	0.31	3.3	96.7	0.0	2.60	0.65	0.74	0.83	1.49	60240	7380	101	0	60	0	0	logfile
✔	7L86	23223	2023-04-23	2020-12-31	3.4	3.54	3.36	3.5	0.023	1.70	0.0	0.14	9.63	0.02	2.361	1.29	0.00	1.5	98.5	0.0	0.96	0.73	0.84	4.17	3.5	0.003	0.61	0.0	0.04	14.38	0.00	2.193	6.14	0.27	2.1	97.9	0.0	0.31	1.21	0.72	0.85	3.03	15802	1686	47	0	323	0	0	logfile
✔	7L8Z	23242	2023-04-23	2021-01-01	3.8	3.94	3.66	3.9	0.023	1.75	1.0	0.15	10.41	0.01	2.046	0.91	0.00	2.8	97.2	0.0	0.76	0.71	0.83	2.99	3.9	0.003	0.69	0.0	0.04	14.84	0.00	2.036	9.09	0.13	4.6	95.2	0.2	0.17	1.30	0.70	0.83	2.45	15989	1734	36	0	289	0	0	logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	7N5H	24190	2023-04-29	2021-06-05	3.24	3.97	4.13	3.4	0.009	1.19	5.0	0.08	12.69	0.01	2.267	4.34	0.18	1.7	98.3	0.0	-1.72	0.79	0.70	1.85	3.5	0.003	0.59	0.0	0.04	14.03	0.00	2.051	10.00	0.09	2.9	97.1	0.0	0.55	1.71	0.86	0.85	2.30	29691	3739	28	0	41	0	0	logfile
✔	6M5S	30091	2023-04-22	2020-03-11	3.9	3.99	—	3.9	0.005	0.77	2.0	0.05	15.65	0.00	2.015	11.35	5.29	9.2	90.6	0.1	-3.65	0.59	0.68	1.57	3.9	0.003	0.72	0.0	0.04	16.35	0.00	2.108	14.68	0.53	8.6	91.4	0.0	-0.73	1.02	0.62	0.76	1.79	11055	1440	4	0	2	0	0	logfile
✔	7WVQ	32857	2023-04-29	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.6	0.003	0.74	0.0	0.05	11.40	0.01	2.061	14.61	0.03	3.9	96.1	0.1	-1.44	1.11	0.72	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	7L90	23243	2023-04-23	2021-01-01	4.5	4.61	4.27	4.5	0.021	1.76	1.0	0.14	10.81	0.02	2.330	2.98	0.00	1.5	98.5	0.0	0.73	0.73	0.78	—	4.5	0.003	0.73	0.0	0.05	12.73	0.00	2.163	13.50	0.13	2.9	97.1	0.0	-0.30	1.43	0.74	0.80	—	15480	1694	24	0	279	0	0	logfile
✔	7L87	23224	2023-04-23	2020-12-31	3.6	3.72	3.54	3.7	0.023	1.76	2.0	0.15	10.19	0.02	2.027	2.02	0.00	2.4	97.6	0.0	0.74	0.70	0.82	3.36	3.6	0.006	0.77	0.0	0.05	15.44	0.00	2.142	8.04	0.47	5.4	94.6	0.0	-0.53	1.26	0.70	0.83	2.63	15766	1677	53	0	326	0	0	logfile
✔	6WM3	21848	2023-04-26	2020-04-20	3.4	3.61	—	3.5	0.007	0.71	0.0	0.04	16.95	0.00	2.026	11.26	8.84	7.8	92.2	0.0	-2.80	0.76	0.82	2.00	3.5	0.004	0.68	0.0	0.04	16.95	0.00	2.050	10.13	0.41	5.3	94.7	0.0	0.10	0.53	0.77	0.85	1.75	69755	9210	39	0	9	0	0	logfile
✔	7UVL	26813	2023-04-24	2022-05-02	3.56	4.29	3.57	3.8	0.003	0.56	0.0	0.04	12.92	0.00	2.161	13.72	0.00	5.2	94.8	0.0	-0.68	0.90	0.82	1.57	3.8	0.005	0.67	0.0	0.04	14.80	0.00	2.044	18.46	0.22	7.1	92.9	0.0	-0.75	0.88	0.90	0.83	1.07	16508	2154	5	0	0	0	0	logfile
✔	7oM0	12982	2023-04-26	2021-05-21	3.1	3.92	3.06	3.2	0.004	0.63	0.0	0.04	13.27	0.00	2.209	7.54	0.04	2.7	97.3	0.0	1.24	0.90	0.85	2.71	3.3	0.004	0.50	0.0	0.04	14.63	0.00	2.172	11.35	0.16	3.0	97.0	0.0	0.99	0.89	0.90	0.88	2.37	22042	2657	12	0	6	0	0	logfile
✔	6S44	10097	2023-04-24	2019-06-26	3.19	3.30	3.41	3.2	0.010	0.92	0.0	0.06	16.63	0.01	2.324	10.10	11.02	9.7	90.3	0.0	-3.81	0.71	0.82	3.28	3.2	0.007	0.76	0.0	0.05	16.97	0.01	2.148	22.58	1.13	12.4	87.6	0.0	-2.84	0.69	0.73	0.85	3.37	67200	8760	60	0	0	0	0	logfile

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