Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L2P	23136	2022-04-06	2020-12-17	2.6	2.86	2.54	2.9	0.006	1.29	0.0	0.27	13.15	0.00	2.080	1.42	0.76	6.5	93.4	0.1	0.13	0.60	0.79	3.53	2.9	0.004	0.71	0.0	0.04	16.80	0.00	2.177	7.79	1.47	6.1	93.9	0.0	1.06	3.17	0.60	0.83	3.41	18448	2234	8	0	9	0	0	logfile
✘	7EVZ	31342	2022-04-05	2021-05-24	3.07	3.81	—	3.7	0.004	0.61	0.0	0.04	13.17	0.00	2.160	7.10	0.30	3.2	96.8	0.0	-1.99	0.54	0.75	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9078	1144	6	0	5	0	0	logfile
✔	7EW7	31349	2022-04-05	2021-05-24	3.27	3.91	—	3.9	0.005	0.58	0.0	0.04	13.57	0.00	2.016	6.68	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.003	0.59	0.0	0.04	15.69	0.00	2.150	6.73	0.41	4.4	95.6	0.0	-0.44	1.29	0.60	0.78	1.96	9004	1144	6	0	1	0	0	logfile
✔	7EW3	31346	2022-04-04	2021-05-24	3.1	3.34	—	3.4	0.004	0.50	0.0	0.04	14.17	0.00	2.274	4.63	0.00	1.4	98.6	0.0	1.36	0.66	0.77	2.23	3.4	0.003	0.56	0.0	0.04	15.65	0.00	2.095	4.52	0.31	2.4	97.6	0.0	1.14	1.36	0.65	0.78	2.66	9072	1149	6	0	5	0	0	logfile
✔	7MKD	23892	2022-04-08	2021-04-23	3.2	3.75	3.33	3.6	0.019	0.84	9.0	0.07	17.76	0.01	1.653	8.05	6.15	7.2	92.8	0.1	-1.58	0.78	0.83	2.42	3.6	0.005	0.67	0.0	0.04	17.73	0.00	1.954	11.01	0.09	6.9	93.0	0.1	-1.26	1.09	0.75	0.81	2.12	32393	3758	12	136	6	0	0	logfile
✔	7EW2	31345	2022-04-04	2021-05-24	3.1	3.30	—	3.4	0.004	0.77	0.0	0.05	14.04	0.00	2.201	10.55	0.61	1.7	98.3	0.0	-0.25	0.60	0.68	1.56	3.4	0.013	1.17	1.0	0.04	15.99	0.01	2.200	10.43	0.00	3.9	96.1	0.0	0.02	0.37	0.61	0.74	1.68	9001	1149	5	0	1	0	0	logfile
✔	7FiG	31596	2022-04-05	2021-07-31	3.9	4.18	—	4.1	0.007	1.10	0.0	0.06	13.39	0.01	2.011	3.44	0.00	5.3	94.7	0.0	-2.06	0.65	0.76	1.78	4.1	0.003	0.86	0.0	0.05	16.39	0.00	2.115	15.85	0.71	3.2	96.8	0.0	-0.28	2.51	0.67	0.79	1.03	12839	1632	10	0	5	0	0	logfile
✘	7EW0	31343	2022-04-05	2021-05-24	3.42	4.10	—	4.1	0.003	0.61	0.0	0.04	14.16	0.00	2.087	6.80	0.71	2.9	97.1	0.0	-1.47	0.59	0.76	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8987	1142	6	0	1	0	0	logfile
✔	7RD6	24413	2022-04-04	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.004	0.71	0.0	0.04	16.02	0.00	2.135	13.96	0.24	5.7	94.3	0.0	-1.35	0.42	0.57	0.73	1.95	7396	929	1	0	2	0	0	logfile
✔	7EVY	31341	2022-04-05	2021-05-24	2.98	3.64	—	3.6	0.003	0.60	0.0	0.21	12.68	0.00	2.061	8.78	0.91	3.1	96.9	0.0	-1.68	0.58	0.77	2.30	3.5	0.003	0.64	0.0	0.04	15.64	0.00	2.157	7.06	3.15	3.6	96.4	0.0	-0.05	0.52	0.54	0.76	2.51	9024	1144	6	0	2	0	0	logfile
✔	7RLJ	24532	2022-04-06	2021-07-23	3.8	4.28	—	3.7	0.004	0.92	0.0	0.05	14.45	0.01	2.067	15.59	0.01	6.2	93.2	0.6	-2.67	0.86	0.79	0.25	3.7	0.005	0.74	0.0	0.05	15.78	0.01	1.913	15.49	0.36	6.6	93.2	0.1	-1.16	1.22	0.88	0.83	0.75	69156	8736	24	0	36	0	0	logfile
✔	7RLB	24524	2022-04-08	2021-07-23	3.3	3.56	—	3.2	0.004	0.75	0.0	0.04	14.61	0.00	2.259	10.02	0.03	3.8	96.0	0.3	-1.67	0.80	0.68	0.64	3.2	0.006	0.73	0.0	0.05	16.15	0.00	2.083	13.67	0.27	4.8	95.1	0.1	-0.72	1.86	0.89	0.87	1.61	34884	4410	12	0	12	0	0	logfile
✔	7RLD	24526	2022-04-08	2021-07-23	3.4	3.68	—	3.1	0.002	0.66	0.0	0.04	14.57	0.00	1.692	7.62	0.00	3.8	96.0	0.1	-1.35	0.87	0.78	1.31	3.2	0.007	0.78	0.0	0.05	15.40	0.00	2.036	12.70	0.11	5.4	94.6	0.0	-0.69	1.27	0.90	0.87	1.96	34854	4410	12	0	12	0	0	logfile
✔	7RLF	24528	2022-04-08	2021-07-23	3.1	3.36	—	3.0	0.004	0.58	0.0	0.04	14.61	0.00	2.042	12.47	0.19	3.9	95.9	0.3	0.50	0.85	0.83	2.17	3.0	0.004	0.58	0.0	0.04	15.07	0.00	1.947	9.93	0.13	3.7	96.1	0.2	0.85	0.40	0.89	0.89	2.30	34578	4368	12	0	24	0	0	logfile
✔	7RL9	24522	2022-04-08	2021-07-23	3.3	3.87	—	3.6	0.003	0.73	0.0	0.04	11.05	0.00	2.210	9.51	0.00	8.1	91.6	0.3	-1.82	0.82	0.81	1.73	3.6	0.003	0.61	0.0	0.04	11.92	0.00	2.206	7.78	0.11	7.4	92.6	0.0	-0.62	1.20	0.83	0.84	1.91	35220	4464	12	0	12	0	0	logfile
✔	7RLH	24530	2022-04-08	2021-07-23	3.0	3.28	—	2.9	0.004	0.61	0.0	0.04	13.27	0.00	1.783	13.77	0.00	4.1	95.7	0.3	0.36	0.87	0.84	2.26	2.8	0.005	0.64	0.0	0.04	15.31	0.00	1.913	12.47	1.37	4.5	95.4	0.1	0.71	0.51	0.90	0.89	2.36	34584	4368	12	0	24	0	0	logfile
✔	7L2T	23140	2022-04-06	2020-12-17	3.08	3.13	3.02	3.2	0.004	1.06	1.0	0.26	12.65	0.00	2.348	0.67	0.60	5.5	94.5	0.0	0.70	0.64	0.84	3.00	3.2	0.012	0.95	0.0	0.04	14.76	0.00	2.119	4.46	0.18	6.9	93.1	0.0	0.74	1.01	0.66	0.87	2.45	20167	2463	16	0	9	4	0	logfile
✘	7E1X	30945	2022-04-09	2021-02-03	2.93	3.36	—	3.3	0.013	1.46	3.0	0.06	17.99	0.02	1.182	9.31	6.11	7.9	91.6	0.5	-2.24	0.62	0.80	2.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	42679	5132	34	0	59	0	0	logfile
✔	7NZM	12665	2022-04-04	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	13.92	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.003	0.72	0.0	0.04	14.93	0.00	2.028	16.52	0.21	2.4	97.6	0.0	0.49	1.48	0.94	0.84	0.23	9109	1157	8	0	4	0	0	logfile
✔	7L2N	23134	2022-04-05	2020-12-17	3.09	2.91	3.01	3.3	0.011	0.86	0.0	0.06	10.50	0.01	2.167	1.93	0.25	5.1	94.9	0.0	0.30	0.51	0.78	2.50	3.3	0.003	0.68	0.0	0.04	15.68	0.00	2.083	14.78	0.25	5.1	94.9	0.0	-0.12	0.80	0.54	0.81	1.72	14724	1780	8	0	4	0	0	logfile

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