Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CQ5	30436	2022-12-13	2020-08-08	2.6	2.69	—	2.7	0.007	1.05	1.0	0.06	10.22	0.01	2.185	3.51	0.46	7.4	92.6	0.0	-3.83	0.65	0.84	4.09	2.7	0.003	0.63	0.0	0.04	14.97	0.00	2.168	6.06	2.12	6.1	93.9	0.0	0.86	1.26	0.66	0.86	3.20	13942	1774	8	0	10	0	0	logfile
✔	6X9V	22112	2022-12-15	2020-06-03	3.5	3.69	3.50	3.6	0.026	1.72	0.0	0.10	9.80	0.01	2.232	1.77	0.29	3.4	96.4	0.3	0.76	0.63	0.68	2.79	3.6	0.005	0.65	0.0	0.04	13.47	0.00	2.121	7.46	0.33	4.9	95.0	0.1	0.32	1.76	0.68	0.82	2.44	26120	3144	44	0	116	0	0	logfile
✔	7JPX	22426	2022-12-14	2020-08-10	2.9	3.05	—	3.0	0.013	1.10	0.0	0.06	19.68	0.01	2.078	14.77	11.89	8.2	91.5	0.3	-4.18	0.67	0.83	3.06	3.0	0.002	0.62	0.0	0.04	18.51	0.00	2.140	8.28	5.52	4.9	95.1	0.0	0.11	1.26	0.66	0.84	3.01	18640	2258	4	0	13	0	0	logfile
✔	6X9U	22111	2022-12-15	2020-06-03	3.2	3.30	3.15	3.3	0.024	1.67	0.0	0.10	9.77	0.01	2.174	1.52	0.15	3.3	96.5	0.3	0.43	0.61	0.73	3.98	3.2	0.005	0.63	0.0	0.04	13.22	0.00	2.133	5.15	0.15	4.4	95.5	0.1	0.31	0.61	0.63	0.85	3.24	26120	3144	44	0	116	0	0	logfile
✔	7JPK	22414	2022-12-14	2020-08-09	3.0	3.13	—	3.1	0.007	0.86	1.0	0.05	18.93	0.01	2.047	12.77	8.84	6.8	93.0	0.1	-3.85	0.67	0.85	2.52	3.1	0.003	0.63	0.0	0.04	18.29	0.00	2.107	8.78	5.22	5.6	94.4	0.0	-0.77	0.50	0.66	0.85	2.15	18591	2257	5	0	12	0	0	logfile
✔	6X9R	22108	2022-12-15	2020-06-03	3.1	3.18	3.05	3.2	0.024	1.70	0.0	0.10	9.81	0.01	2.228	1.22	0.44	3.3	96.4	0.4	0.53	0.62	0.73	3.87	3.1	0.006	0.64	0.0	0.05	13.35	0.00	2.093	4.57	0.33	5.1	94.8	0.1	0.38	1.20	0.63	0.85	3.33	26120	3144	44	0	116	0	0	logfile
✔	6X9S	22109	2022-12-15	2020-06-03	3.1	3.27	3.11	3.2	0.024	1.67	0.0	0.10	10.12	0.01	2.329	1.34	0.44	3.6	96.1	0.3	0.54	0.61	0.73	4.47	3.2	0.005	0.62	0.0	0.04	13.83	0.00	2.077	5.73	0.40	4.1	95.8	0.1	0.30	1.17	0.64	0.85	3.56	26120	3144	44	0	116	0	0	logfile
✘	6VVY	21407	2022-12-18	2020-02-18	3.42	4.20	—	3.8	0.007	0.87	1.0	0.05	19.81	0.01	1.180	6.21	4.85	7.6	92.3	0.1	-3.95	0.90	0.87	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30033	3516	12	130	4	0	0	logfile
✘	6VVX	21406	2022-12-18	2020-02-18	3.39	4.23	—	3.8	0.007	0.84	0.0	0.05	18.93	0.01	1.182	5.43	3.99	6.2	93.8	0.0	-3.74	0.90	0.87	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29858	3508	12	128	4	0	0	logfile
✔	7A8Z	11680	2022-12-12	2020-08-31	3.35	3.81	3.38	3.7	0.004	0.59	0.0	0.04	14.41	0.00	2.254	7.30	0.00	7.6	92.3	0.1	-1.49	0.68	0.75	3.00	3.8	0.004	0.58	0.0	0.04	15.66	0.00	2.279	7.24	0.24	7.7	92.2	0.1	-0.57	1.50	0.73	0.80	2.87	8402	1103	2	0	0	0	0	logfile
✔	7ANW	11834	2022-12-20	2020-10-13	2.68	3.76	—	3.2	0.010	1.98	94.0	0.20	17.90	0.01	2.288	7.14	6.45	8.3	91.7	0.0	-5.69	0.94	0.93	2.20	3.1	0.006	0.65	0.0	0.04	17.13	0.00	2.160	8.68	1.43	1.9	98.1	0.0	1.80	3.66	0.92	0.90	1.76	40520	5160	16	0	8	0	0	logfile
✔	7KRZ	23013	2022-12-15	2020-11-20	3.2	2.56	3.10	2.8	0.007	0.80	0.0	0.05	14.00	0.00	1.906	7.90	0.19	5.8	94.2	0.0	-2.84	0.74	0.77	3.22	2.8	0.003	0.58	0.0	0.04	15.56	0.00	2.043	7.66	0.15	4.4	95.6	0.0	0.20	0.50	0.79	0.80	3.00	24745	3127	13	0	28	0	0	logfile
✔	7B16	11979	2022-12-14	2020-11-23	3.15	3.24	—	3.2	0.012	0.84	0.0	0.05	13.83	0.01	2.239	4.74	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.002	0.51	0.0	0.04	15.32	0.00	2.331	3.45	0.09	3.4	96.6	0.0	1.63	0.99	0.71	0.86	2.30	21152	2572	8	0	12	0	0	logfile
✔	7ETo	31301	2022-12-19	2021-05-13	4.0	3.89	—	4.0	0.007	0.94	0.0	0.06	14.66	0.01	2.228	7.32	0.70	6.6	93.4	0.0	-4.12	0.40	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98674	12386	26	0	0	0	0	logfile
✔	6X3F	22021	2022-12-12	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.62	0.0	0.04	15.68	0.00	2.258	6.78	0.00	3.6	96.4	0.0	-0.29	0.95	0.53	0.84	2.28	9366	1227	6	0	3	0	0	logfile
✔	6YYS	11004	2022-12-15	2020-05-05	3.08	3.54	3.18	3.1	0.005	0.66	0.0	0.04	13.86	0.01	1.926	9.47	0.00	8.8	91.1	0.0	-4.90	0.84	0.77	2.94	3.1	0.005	0.69	0.0	0.04	15.59	0.00	1.958	9.36	0.33	6.2	93.8	0.0	-0.38	0.71	0.91	0.87	2.73	27930	3597	7	0	3	0	0	logfile
✔	6Z11	11026	2022-12-15	2020-05-11	3.36	3.67	3.53	3.4	0.005	0.61	0.0	0.04	14.18	0.00	1.906	8.03	0.04	11.0	89.0	0.0	-5.38	0.84	0.78	2.17	3.4	0.003	0.68	0.0	0.04	16.00	0.00	2.004	9.76	0.23	5.4	94.6	0.0	-0.80	1.10	0.89	0.87	2.10	23948	3077	7	0	3	0	0	logfile
✔	7CT5	30460	2022-12-20	2020-08-18	4.0	4.11	—	3.9	0.009	0.99	0.0	0.07	17.08	0.01	1.960	17.90	7.37	8.9	90.2	0.9	-4.38	0.66	0.59	—	3.9	0.004	0.76	0.0	0.05	16.88	0.00	2.039	14.73	0.38	6.8	93.1	0.0	-1.37	1.90	0.71	0.70	—	39626	4804	47	0	104	0	0	logfile
✔	6YXU	10996	2022-12-15	2020-05-03	3.08	3.55	3.19	3.1	0.006	0.67	0.0	0.04	14.00	0.01	1.862	9.59	0.00	9.4	90.5	0.0	-4.95	0.86	0.79	3.27	3.2	0.003	0.64	0.0	0.04	15.35	0.00	2.023	8.11	0.20	6.0	93.9	0.0	-0.12	0.63	0.91	0.88	2.66	27791	3583	7	0	3	0	0	logfile
✔	7LG1	23310	2022-12-13	2021-01-19	2.7	2.32	—	2.7	0.010	0.71	0.0	0.05	13.43	0.00	2.226	11.46	0.24	2.2	97.8	0.0	-1.33	0.61	0.82	2.83	2.7	0.003	0.57	0.0	0.04	16.29	0.00	2.221	12.16	0.43	2.7	97.3	0.0	0.37	0.62	0.63	0.80	2.60	15017	1800	12	0	5	4	0	logfile

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