Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UKG	26580	2023-02-18	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	7Z0T	14430	2023-02-23	2022-02-23	3.4	2.92	—	3.1	0.007	1.45	36.0	0.10	14.79	0.01	1.499	8.82	1.55	4.4	95.3	0.3	-2.09	0.69	0.80	2.69	3.1	0.003	0.58	0.0	0.04	16.04	0.00	2.125	10.06	0.38	3.9	96.0	0.0	-0.12	2.65	0.71	0.83	2.47	20634	2690	12	0	15	0	0	logfile
✔	6REC	4849	2023-02-21	2019-04-12	3.3	3.39	3.31	3.3	0.011	1.02	0.0	0.06	14.40	0.01	2.140	5.40	0.37	4.8	95.1	0.1	-3.95	0.66	0.81	2.79	3.3	0.003	0.60	0.0	0.04	15.81	0.00	1.964	9.82	0.18	3.9	96.0	0.1	0.07	1.60	0.68	0.85	2.15	53756	7104	37	0	11	0	0	logfile
✔	7MBQ	23741	2023-02-27	2021-04-01	2.3	3.00	—	2.6	0.003	0.59	0.0	0.04	15.25	0.01	2.246	6.69	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.6	0.003	0.54	0.0	0.04	15.37	0.00	2.242	5.10	0.99	3.3	96.7	0.0	2.69	0.37	0.77	0.92	3.67	30616	3984	12	0	20	16	0	logfile
✔	7KJ5	22894	2023-02-24	2020-10-25	3.6	3.73	—	3.6	0.015	1.94	10.0	0.13	13.66	0.01	1.376	5.48	2.00	8.0	91.6	0.4	-2.31	0.71	0.70	1.98	3.6	0.003	0.65	0.0	0.04	15.10	0.00	2.145	9.79	0.24	3.7	96.2	0.1	-0.42	0.82	0.75	0.77	1.48	23562	2909	18	0	59	0	0	logfile
✔	7PEB	13351	2023-02-26	2021-08-09	3.67	4.11	—	3.9	0.002	0.52	0.0	0.04	13.94	0.00	2.245	4.52	2.69	5.1	94.9	0.1	-2.66	0.71	0.73	1.45	3.9	0.003	0.70	0.0	0.04	15.59	0.00	2.051	11.19	0.41	3.5	96.5	0.0	0.88	2.13	0.72	0.75	1.15	29140	3611	5	0	57	0	0	logfile
✘	7KJ2	22891	2023-02-26	2020-10-25	3.6	3.68	—	3.6	0.013	1.80	11.0	0.14	13.76	0.01	1.596	6.81	1.69	6.4	93.1	0.5	-2.22	0.69	0.71	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28560	3502	25	0	70	0	0	logfile
✔	6XR8	22292	2023-02-26	2020-07-11	2.9	2.96	—	3.0	0.004	0.60	1.0	0.06	13.70	0.00	2.089	3.88	0.73	2.5	97.4	0.1	-1.26	0.69	0.84	3.60	2.9	0.007	0.72	0.0	0.05	16.77	0.00	2.080	7.63	2.56	4.0	96.0	0.0	-0.23	1.35	0.71	0.88	3.53	27627	3321	42	0	123	0	0	logfile
✔	6RDK	4821	2023-02-21	2019-04-12	3.7	3.64	—	3.7	0.006	0.91	0.0	0.06	14.09	0.01	2.103	6.38	0.44	4.9	94.9	0.2	-4.35	0.70	0.82	2.01	3.7	0.003	0.67	0.0	0.04	16.02	0.00	1.990	11.98	0.32	4.5	95.4	0.1	-0.37	1.20	0.70	0.82	1.55	53748	7103	37	0	11	0	0	logfile
✔	7UNF	26623	2023-02-25	2022-04-10	4.08	3.35	—	3.5	0.007	0.98	0.0	0.05	15.69	0.01	2.011	4.34	0.27	4.8	95.2	0.0	-5.90	0.66	0.82	—	3.5	0.005	0.71	0.0	0.05	14.92	0.00	2.086	7.46	0.01	5.2	94.8	0.0	-1.08	1.03	0.66	0.83	—	66971	8805	40	0	26	0	0	logfile
✔	6M3X	30073	2023-02-23	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.003	0.61	0.0	0.05	16.91	0.00	2.259	5.96	0.73	2.9	97.1	0.0	0.36	0.42	0.78	0.91	6.73	62387	7440	72	0	24	2243	0	logfile
✔	6RES	4855	2023-02-21	2019-04-12	4.3	4.30	—	4.2	0.006	0.95	0.0	0.06	15.02	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.64	0.77	—	4.2	0.003	0.69	0.0	0.04	14.30	0.00	1.919	14.33	0.04	5.1	94.8	0.1	-0.88	1.27	0.64	0.77	—	53756	7104	37	0	11	0	0	logfile
✔	7Xo5	33337	2023-02-26	2022-05-01	3.13	2.30	3.19	2.1	0.004	0.92	1.0	0.06	15.32	0.01	1.796	3.95	0.07	5.0	95.0	0.0	-4.22	0.71	0.71	1.77	2.1	0.003	0.68	0.0	0.05	16.72	0.00	2.125	9.70	0.68	3.6	96.4	0.0	-0.58	1.35	0.74	0.79	2.37	28503	3659	8	0	38	0	0	logfile
✔	8D13	27114	2023-02-19	2022-05-26	2.43	3.23	2.44	2.8	0.003	0.60	0.0	0.05	13.77	0.00	2.067	4.19	0.64	0.8	99.2	0.0	1.47	0.69	0.86	4.45	2.8	0.003	0.55	0.0	0.04	14.58	0.00	1.865	3.90	0.43	1.7	98.3	0.0	1.47	1.49	0.70	0.92	4.43	9216	1113	9	0	6	432	0	logfile
✔	7UKH	26581	2023-02-20	2022-04-01	2.33	2.55	2.38	2.5	0.004	0.61	0.0	0.04	17.88	0.00	2.035	7.98	1.80	2.9	97.1	0.0	0.99	0.77	0.85	3.75	2.5	0.003	0.54	0.0	0.04	18.19	0.00	2.189	7.26	1.41	2.6	97.4	0.0	1.49	0.29	0.75	0.86	3.77	12340	1536	16	0	16	0	0	logfile
✔	6RDH	4818	2023-02-21	2019-04-12	3.0	3.16	—	3.2	0.010	1.01	1.0	0.06	14.11	0.01	2.025	5.62	0.34	5.0	94.8	0.2	-3.87	0.72	0.85	3.15	3.2	0.003	0.63	0.0	0.04	16.22	0.00	1.901	10.11	2.02	3.8	96.0	0.1	0.00	0.51	0.73	0.87	2.56	53748	7103	37	0	11	0	0	logfile
✔	7N1W	24125	2023-02-25	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.004	0.73	0.0	0.05	15.89	0.00	2.008	11.72	0.49	4.9	95.1	0.0	-0.15	1.57	0.84	0.82	2.35	26810	3257	35	0	95	0	0	logfile
✔	7WV4	32845	2023-02-25	2022-02-09	3.35	3.68	—	3.6	0.014	1.48	0.0	0.04	18.99	0.08	2.227	7.60	0.00	4.6	95.4	0.0	-1.40	0.79	0.76	2.07	3.4	0.006	1.76	0.0	0.05	20.13	0.02	2.109	19.23	0.20	9.1	90.9	0.0	-2.03	0.94	0.81	0.81	2.15	24490	2636	6	80	80	0	0	logfile
✔	7V2W	31669	2023-02-23	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.002	0.63	0.0	0.04	17.21	0.00	2.167	6.01	0.04	6.1	93.9	0.0	-1.69	0.66	0.76	0.84	1.31	21619	2655	5	0	0	0	0	logfile
✔	6S91	10126	2023-02-23	2019-07-11	2.68	3.17	2.85	3.0	0.006	0.80	0.0	0.05	14.75	0.00	1.696	20.08	0.09	13.5	86.3	0.2	-4.91	0.69	0.74	2.17	3.1	0.003	0.79	0.0	0.05	17.02	0.00	2.017	16.64	2.96	10.2	89.8	0.0	-2.65	0.69	0.66	0.81	1.72	62045	7488	36	84	6	0	0	logfile

• ← previous
• Page 7 of 353
• next →