Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5X5C	6706	2023-08-19	2017-02-15	4.1	4.20	—	4.1	0.014	1.75	3.0	0.08	14.64	0.01	1.435	30.55	5.82	13.2	85.6	1.2	-3.80	0.65	0.57	—	4.1	0.004	0.96	0.0	0.05	13.03	0.01	2.034	19.12	0.07	12.9	86.9	0.2	-2.46	1.55	0.72	0.71	—	26418	3423	3	0	0	0	0	logfile
✔	6DBR	7848	2023-08-14	2018-05-03	4.0	4.12	—	4.0	0.005	1.05	3.0	0.05	21.17	0.01	1.376	19.29	0.25	7.9	92.0	0.1	-4.14	0.80	0.82	—	4.0	0.005	0.76	0.0	0.04	21.62	0.00	2.094	19.63	0.51	6.9	93.0	0.1	-1.42	1.50	0.80	0.83	—	17040	1794	10	136	6	0	0	logfile
✔	7N28	24128	2023-08-20	2021-05-28	4.2	4.38	4.07	4.2	0.005	0.74	1.0	0.06	14.29	0.00	2.103	12.05	0.16	7.9	92.1	0.0	-1.88	0.85	0.79	—	4.2	0.003	0.63	0.0	0.05	14.22	0.00	2.051	11.69	0.06	6.8	93.2	0.0	-1.52	0.37	0.85	0.79	—	29461	3523	58	0	140	0	0	logfile
✔	7ARB	11878	2023-08-11	2020-10-23	3.41	3.20	—	3.2	0.004	0.65	2.0	0.07	13.95	0.00	1.982	8.37	0.02	3.8	96.1	0.1	0.49	0.78	0.85	3.13	3.2	0.002	0.52	0.0	0.04	15.88	0.00	2.029	7.92	0.09	3.3	96.7	0.0	0.94	1.91	0.81	0.88	2.71	61765	7716	66	0	55	0	0	logfile
✔	6AB5	6999	2023-08-24	2018-07-20	3.7	3.79	—	3.7	0.007	0.96	6.0	0.06	11.27	0.01	1.686	24.89	0.75	5.6	94.4	0.0	-3.80	0.85	0.86	3.48	3.7	0.007	0.66	0.0	0.05	14.07	0.00	2.100	12.10	0.29	7.2	92.8	0.0	-2.04	0.62	0.87	0.87	2.34	139740	18180	60	0	0	0	0	logfile
✔	7Q9F	13868	2023-08-22	2021-11-12	3.6	3.95	—	3.7	0.004	0.51	0.0	0.04	9.26	0.00	1.941	4.46	0.45	3.9	96.1	0.0	0.15	0.88	0.86	2.34	3.7	0.003	0.58	0.0	0.04	12.62	0.00	2.113	10.88	0.11	4.6	95.4	0.0	0.10	1.03	0.88	0.86	1.98	34264	4312	29	0	64	0	0	logfile
✔	7Y24	33585	2023-08-10	2022-06-09	3.25	3.61	3.34	3.6	0.004	0.68	2.0	0.06	12.92	0.00	2.208	12.97	0.37	3.0	97.0	0.0	0.69	0.61	0.73	1.83	3.5	0.003	0.63	0.0	0.04	15.21	0.00	2.227	12.72	0.25	3.1	96.9	0.0	0.78	1.19	0.62	0.76	1.47	8229	1127	6	0	2	0	0	logfile
✔	7E2C	30954	2023-08-17	2021-02-05	4.18	4.23	—	4.1	0.008	1.50	3.0	0.08	15.12	0.01	1.675	10.10	0.94	15.3	83.6	1.1	-5.41	0.78	0.68	—	4.1	0.003	0.77	1.0	0.05	14.06	0.00	2.118	12.98	0.00	13.0	86.7	0.2	-3.20	0.71	0.76	0.68	—	23020	3295	11	0	0	0	0	logfile
✔	7WF4	32460	2023-08-17	2021-12-25	3.4	2.86	—	2.8	0.009	1.05	8.0	0.07	13.55	0.01	2.085	6.38	6.01	3.8	95.7	0.4	-1.41	0.61	0.73	3.58	2.8	0.005	0.63	0.0	0.04	14.81	0.00	2.090	4.97	0.47	3.2	96.4	0.4	0.69	1.41	0.71	0.85	3.65	22143	2760	25	0	7	100	0	logfile
✔	8BGU	16036	2023-08-09	2022-10-28	4.1	5.77	3.97	4.0	0.003	0.84	0.0	0.04	16.17	0.00	2.235	4.09	0.00	5.0	95.0	0.0	-2.58	0.92	0.86	—	4.0	0.003	0.57	0.0	0.03	16.68	0.00	2.102	20.05	0.00	8.8	91.2	0.0	-0.51	2.19	0.92	0.87	—	4779	447	5	121	1	0	0	logfile
✔	7Xo1	33333	2023-08-09	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.003	0.59	0.0	0.05	17.68	0.00	2.230	2.29	2.33	6.4	93.6	0.0	-2.11	1.59	0.43	0.86	5.91	2550	372	6	0	0	0	0	logfile
✔	8AA0	15289	2023-08-22	2022-06-29	3.2	3.48	3.08	3.3	0.010	0.62	0.0	0.05	10.93	0.00	1.978	8.02	0.00	4.4	95.4	0.2	0.31	0.85	0.88	3.66	3.3	0.004	0.54	0.0	0.04	12.58	0.00	2.001	7.80	0.09	4.2	95.7	0.1	-0.03	0.37	0.85	0.90	3.63	33058	4134	16	0	26	0	0	logfile
✔	7F0T	31404	2023-08-12	2021-06-07	3.1	3.75	—	3.7	0.010	1.02	2.0	0.06	14.29	0.01	2.065	13.17	0.57	5.2	94.8	0.0	-2.51	0.58	0.74	2.44	3.8	0.003	0.59	0.0	0.04	16.18	0.00	2.214	9.05	0.45	3.0	97.0	0.0	0.72	0.58	0.56	0.72	1.59	8164	1033	6	0	1	0	0	logfile
✔	5FN2	3237	2023-08-11	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	8AoW	15554	2023-08-25	2022-08-08	2.7	2.68	2.76	2.8	0.014	0.94	1.0	0.05	16.87	0.01	1.869	7.27	1.60	2.2	97.8	0.0	-0.28	0.74	0.85	3.41	2.7	0.003	0.57	0.0	0.04	16.76	0.00	1.932	6.11	1.45	1.6	98.4	0.0	0.01	0.47	0.77	0.90	4.37	43632	5424	36	0	48	324	0	logfile
✔	8ooA	17008	2023-08-10	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	28.16	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.005	0.62	0.0	0.04	28.81	0.00	2.125	7.71	0.00	2.3	97.7	0.0	1.67	1.03	0.77	0.77	2.62	8405	529	8	204	0	0	0	logfile
✔	8BPF	16151	2023-08-15	2022-11-16	3.5	4.03	3.35	3.4	0.006	0.85	0.0	0.06	13.56	0.01	2.267	6.33	0.00	9.5	90.5	0.0	-1.72	0.86	0.77	2.18	3.5	0.003	0.70	0.0	0.05	15.37	0.00	2.174	11.69	0.38	7.8	92.0	0.1	-1.10	1.75	0.89	0.80	1.83	18593	2370	23	0	12	0	0	logfile
✔	6X8T	22095	2023-08-19	2020-06-01	2.9	2.95	2.71	2.9	0.007	0.68	0.0	0.05	12.90	0.01	1.483	6.41	0.41	5.4	94.6	0.0	-0.76	0.86	0.88	4.43	2.9	0.002	0.50	0.0	0.04	15.63	0.00	2.225	4.94	0.70	5.0	95.0	0.0	0.24	3.98	0.86	0.89	4.12	133440	16800	60	0	0	0	0	logfile
✔	7X2F	32966	2023-08-12	2022-02-25	3.0	3.70	—	3.6	0.006	0.83	2.0	0.05	12.82	0.01	2.164	13.36	0.11	3.2	96.8	0.0	-0.87	0.58	0.73	2.55	3.6	0.002	0.55	0.0	0.04	15.89	0.00	2.155	8.36	1.25	2.0	98.0	0.0	0.74	0.46	0.52	0.68	2.00	8249	1036	6	0	4	0	0	logfile
✘	7E0J	30934	2023-08-10	2021-01-28	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8140	672	6	0	56	0	0	logfile

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