Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V5D	31723	2023-11-14	2021-08-17	3.4	4.15	—	4.0	0.010	0.94	0.0	0.05	15.77	0.01	2.215	8.62	0.63	8.5	91.5	0.0	-2.76	0.65	0.81	1.75	4.0	0.003	0.64	0.0	0.04	16.91	0.00	2.232	8.67	0.53	5.0	95.0	0.0	-0.01	0.43	0.65	0.81	1.29	8822	1140	3	0	1	0	0	logfile
✔	7V0U	26951	2023-11-13	2022-05-11	3.0	2.84	2.93	2.9	0.005	0.75	0.0	0.05	20.37	0.01	2.232	7.29	2.50	1.5	98.5	0.0	0.61	0.64	0.86	3.90	2.9	0.004	0.57	0.0	0.04	20.30	0.00	2.119	9.98	2.92	2.2	97.8	0.0	1.33	0.55	0.62	0.87	3.81	4453	558	3	0	0	2	0	logfile
✔	7BCW	12145	2023-11-14	2020-12-21	3.5	3.86	—	3.7	0.005	0.76	0.0	0.04	15.72	0.00	1.868	8.82	0.00	4.3	95.7	0.0	0.55	0.73	0.87	2.27	3.7	0.003	0.62	0.0	0.04	16.54	0.00	1.944	8.11	0.31	3.1	96.9	0.0	0.97	0.91	0.70	0.86	2.00	9025	1148	4	0	8	0	0	logfile
✔	7oB9	12795	2023-11-22	2021-04-21	2.7	3.23	2.76	2.9	0.013	1.11	0.0	0.06	12.48	0.01	2.041	4.45	0.55	5.5	94.5	0.0	-3.33	0.87	0.87	4.67	2.9	0.003	0.67	0.0	0.04	15.39	0.00	1.949	9.55	1.48	4.3	95.7	0.0	0.12	1.07	0.86	0.90	3.50	36345	4397	21	69	7	0	0	logfile
✔	6oGZ	20060	2023-11-18	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.82	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.60	0.0	0.04	17.26	0.00	2.036	9.18	0.37	2.7	97.3	0.0	-1.75	1.44	0.44	0.85	1.69	74962	9081	14	35	2	0	0	logfile
✘	6PLR	20373	2023-11-16	2019-07-01	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14685	1735	15	0	75	0	0	logfile
✘	8ERA	28551	2023-11-20	2022-10-11	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29054	3644	6	0	2	0	0	logfile
✔	7ZoL	14847	2023-11-16	2022-04-26	3.03	3.33	3.14	3.3	0.003	0.64	0.0	0.05	16.53	0.00	2.216	6.74	0.20	6.5	92.6	0.8	-0.47	0.69	0.74	1.68	3.3	0.004	0.67	0.0	0.04	17.14	0.00	2.167	8.79	0.20	7.5	91.9	0.6	-0.62	0.38	0.68	0.77	2.06	15440	1852	4	39	4	0	0	logfile
✔	7oTV	13067	2023-11-20	2021-06-10	3.24	3.53	—	3.4	0.012	0.79	0.0	0.10	14.61	0.01	2.090	10.98	0.34	8.5	91.4	0.1	-1.18	0.71	0.65	0.82	3.4	0.003	0.73	0.0	0.04	16.70	0.00	2.146	10.78	0.25	5.8	94.1	0.1	-0.43	0.90	0.77	0.77	0.88	29041	3636	1	0	21	0	0	logfile
✔	7MoA	23922	2023-11-15	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	18.23	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.72	0.0	0.05	13.33	0.00	2.133	15.77	0.00	4.8	95.2	0.1	-1.11	0.92	0.84	0.78	—	12511	1580	5	0	12	0	0	logfile
✔	7TAX	25789	2023-11-19	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.003	0.68	0.0	0.04	17.73	0.00	2.119	12.65	1.88	5.0	95.0	0.0	-0.04	1.23	0.77	0.84	2.34	27855	3349	14	99	0	0	0	logfile
✔	7TJ5	25916	2023-11-15	2022-01-14	2.41	3.25	2.42	2.9	0.006	1.92	0.0	0.05	19.67	0.01	2.285	5.53	0.22	5.4	94.6	0.0	0.48	0.69	0.71	2.97	2.9	0.004	0.71	0.0	0.04	17.03	0.00	2.324	7.48	1.04	3.7	96.3	0.0	2.04	1.48	0.73	0.89	2.36	13152	1568	8	0	32	0	0	logfile
✔	6XEU	22150	2023-11-15	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.57	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.55	0.00	2.305	3.25	0.00	5.2	94.8	0.0	0.16	0.37	0.77	0.89	2.92	10544	1312	8	0	16	0	0	logfile
✔	7APX	11859	2023-11-17	2020-10-20	3.4	4.19	—	4.0	0.006	0.76	0.0	0.05	16.32	0.00	2.090	9.36	9.74	6.3	93.6	0.1	-2.30	0.83	0.83	1.26	4.0	0.003	0.62	0.0	0.04	15.85	0.00	2.171	7.03	0.22	5.2	94.8	0.0	1.33	0.46	0.81	0.80	1.12	20552	2870	6	0	19	0	0	logfile
✔	6YRF	10888	2023-11-19	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.54	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.003	0.71	0.0	0.04	15.77	0.00	2.084	16.66	0.43	10.1	89.9	0.0	-0.77	0.56	0.91	0.82	0.90	24828	3108	4	0	0	0	0	logfile
✔	7oTM	13062	2023-11-20	2021-06-10	3.33	3.97	—	3.7	0.008	0.93	1.0	0.05	14.51	0.01	2.071	16.56	0.28	9.2	90.6	0.2	-1.79	0.82	0.77	1.32	3.7	0.003	0.70	0.0	0.04	15.94	0.00	2.146	11.32	0.16	6.4	93.6	0.0	-0.53	1.41	0.84	0.80	0.80	29040	3636	1	0	21	0	0	logfile
✔	8FHN	29096	2023-11-15	2022-12-14	3.0	3.42	3.14	3.4	0.009	0.99	1.0	0.06	14.62	0.01	2.199	6.72	2.21	4.7	95.3	0.0	-1.79	0.69	0.88	3.88	3.4	0.002	0.54	0.0	0.04	16.07	0.00	2.199	5.34	1.45	2.3	97.7	0.1	0.29	0.42	0.66	0.88	3.00	13613	1722	5	0	4	0	0	logfile
✔	7F02	31394	2023-11-14	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.12	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.003	0.69	0.0	0.04	15.99	0.00	1.940	9.00	0.33	8.1	91.9	0.0	-0.43	0.93	0.65	0.83	2.07	8835	1130	9	0	5	0	0	logfile
✘	6TAY	10430	2023-11-21	2019-10-31	3.2	2.55	—	2.9	0.011	1.15	0.0	0.06	11.27	0.01	2.066	4.61	0.28	8.9	91.0	0.1	-3.72	0.86	0.82	3.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35241	4350	1	0	71	0	0	logfile
✔	6KiX	0694	2023-11-19	2019-07-20	4.1	4.17	—	4.1	0.006	0.84	0.0	0.05	22.55	0.01	2.219	3.30	0.00	8.6	91.4	0.0	-3.74	0.71	0.73	—	4.1	0.003	0.62	0.0	0.04	22.98	0.00	2.129	10.13	0.00	6.1	93.9	0.0	-1.25	0.83	0.73	0.76	—	19900	1763	15	290	1	0	0	logfile

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