Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V9Q	21126	2023-04-28	2019-12-15	2.9	3.05	—	3.0	0.008	1.12	1.0	0.07	12.82	0.01	2.040	9.79	1.56	6.5	93.4	0.1	-4.27	0.76	0.83	3.71	3.0	0.006	0.75	0.0	0.05	16.98	0.01	2.101	8.90	3.38	6.2	93.8	0.0	-0.56	1.72	0.75	0.86	3.27	28090	3337	13	61	4	0	0	logfile
✘	6PM5	20388	2023-04-23	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	6VBW	21146	2023-04-28	2019-12-19	3.2	3.31	—	3.3	0.011	1.19	2.0	0.07	14.36	0.01	2.057	12.06	1.96	8.5	91.4	0.1	-4.69	0.75	0.79	3.46	3.3	0.003	0.63	0.0	0.04	16.75	0.00	2.133	9.76	0.37	6.4	93.5	0.0	-1.58	1.31	0.79	0.85	2.45	29087	3343	15	107	4	0	0	logfile
✔	6PPK	20441	2023-04-29	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	20.24	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.005	0.75	0.0	0.04	19.38	0.01	2.041	27.33	0.04	10.8	89.2	0.0	-2.34	1.59	0.88	0.84	—	80451	2684	24	2770	1	0	0	logfile
✔	7MR1	23953	2023-04-24	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.74	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.63	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	7MR4	23956	2023-04-24	2021-05-07	4.5	4.68	—	4.5	0.004	0.86	0.0	0.05	16.97	0.01	2.014	7.21	0.00	5.4	94.6	0.0	-1.71	0.82	0.81	—	4.5	0.002	0.60	0.0	0.04	16.74	0.00	2.039	13.47	0.06	5.2	94.8	0.0	-0.11	0.50	0.82	0.82	—	17203	2057	5	33	0	0	0	logfile
✔	7JW0	22512	2023-04-27	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	7S1M	24805	2023-04-21	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.003	0.54	0.0	0.04	15.96	0.00	2.152	5.62	1.36	1.8	98.2	0.0	1.68	0.92	0.77	0.87	3.72	9160	1168	6	0	1	0	0	logfile
✘	7S8B	24892	2023-04-25	2021-09-17	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21124	2448	8	0	46	0	0	logfile
✔	7EJ2	31149	2023-04-25	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	15.52	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.67	0.0	0.04	15.70	0.00	2.192	8.75	0.24	2.2	97.8	0.0	-1.52	0.57	0.84	0.87	2.77	20968	2728	12	0	4	0	0	logfile
✔	6V8X	21111	2023-04-27	2019-12-12	3.0	3.33	—	3.2	0.017	1.48	9.0	0.08	9.76	0.01	2.180	4.31	0.23	8.5	90.6	0.9	-3.90	0.82	0.77	2.66	3.2	0.004	0.85	0.0	0.05	14.98	0.00	2.151	12.63	3.42	7.7	92.0	0.3	-1.96	1.44	0.84	0.81	2.32	24825	2997	54	0	105	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6D7S	7824	2023-04-24	2018-04-25	4.34	4.44	—	4.3	0.007	1.16	0.0	0.06	11.86	0.01	2.248	7.14	1.17	12.1	87.8	0.2	-5.61	0.77	0.79	—	4.3	0.003	0.84	0.0	0.04	13.76	0.00	2.227	15.13	0.15	10.2	89.8	0.0	-1.25	1.42	0.77	0.80	—	19018	2372	4	0	0	0	0	logfile
✘	6PPL	20442	2023-04-20	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	14.17	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8155	980	6	0	4	0	0	logfile
✔	6KS7	0759	2023-04-22	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.70	0.0	0.04	12.04	0.00	2.131	14.80	0.03	3.3	96.6	0.1	-0.06	1.85	0.74	0.67	—	62022	8131	16	0	0	0	0	logfile
✔	6PZA	20530	2023-04-21	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	10.72	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	3.8	0.003	0.68	0.0	0.04	14.90	0.00	2.228	9.43	0.58	5.0	95.0	0.0	0.79	1.25	0.62	0.79	0.90	9659	1441	3	0	2	0	0	logfile
✔	8EXQ	28659	2023-04-21	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	7XDD	33144	2023-04-21	2022-03-26	2.93	2.56	2.92	3.0	0.005	0.72	0.0	0.05	14.36	0.00	2.204	6.52	2.03	2.4	97.6	0.0	0.32	0.79	0.85	3.21	3.0	0.003	0.60	0.0	0.04	16.22	0.00	2.100	7.14	1.93	2.1	97.9	0.0	1.85	0.47	0.80	0.87	2.70	9021	1123	2	0	0	0	0	logfile
✔	6J2X	9772	2023-04-19	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.65	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.004	0.78	1.0	0.04	15.31	0.00	2.050	18.52	0.40	4.7	95.2	0.1	-0.69	1.88	0.84	0.78	0.88	106176	13501	47	0	0	0	0	logfile
✔	6UVA	20906	2023-04-21	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.63	0.0	0.04	18.40	0.00	2.148	9.03	3.26	4.6	95.4	0.0	0.18	1.31	0.66	0.79	2.96	9561	1199	7	0	0	0	0	logfile

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