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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V5D | 31723 | 2023-11-14 | 2021-08-17 | 3.4 | 4.15 | — | 4.0 | 0.010 | 0.94 | 0.0 | 0.05 | 15.77 | 0.01 | 2.215 | 8.62 | 0.63 | 8.5 | 91.5 | 0.0 | -2.76 | 0.65 | 0.81 | 1.75 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 16.91 | 0.00 | 2.232 | 8.67 | 0.53 | 5.0 | 95.0 | 0.0 | -0.01 | 0.43 | 0.65 | 0.81 | 1.29 | 8822 | 1140 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7V0U | 26951 | 2023-11-13 | 2022-05-11 | 3.0 | 2.84 | 2.93 | 2.9 | 0.005 | 0.75 | 0.0 | 0.05 | 20.37 | 0.01 | 2.232 | 7.29 | 2.50 | 1.5 | 98.5 | 0.0 | 0.61 | 0.64 | 0.86 | 3.90 | 2.9 | 0.004 | 0.57 | 0.0 | 0.04 | 20.30 | 0.00 | 2.119 | 9.98 | 2.92 | 2.2 | 97.8 | 0.0 | 1.33 | 0.55 | 0.62 | 0.87 | 3.81 | 4453 | 558 | 3 | 0 | 0 | 2 | 0 | logfile |
✔ | 7BCW | 12145 | 2023-11-14 | 2020-12-21 | 3.5 | 3.86 | — | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 15.72 | 0.00 | 1.868 | 8.82 | 0.00 | 4.3 | 95.7 | 0.0 | 0.55 | 0.73 | 0.87 | 2.27 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 16.54 | 0.00 | 1.944 | 8.11 | 0.31 | 3.1 | 96.9 | 0.0 | 0.97 | 0.91 | 0.70 | 0.86 | 2.00 | 9025 | 1148 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7oB9 | 12795 | 2023-11-22 | 2021-04-21 | 2.7 | 3.23 | 2.76 | 2.9 | 0.013 | 1.11 | 0.0 | 0.06 | 12.48 | 0.01 | 2.041 | 4.45 | 0.55 | 5.5 | 94.5 | 0.0 | -3.33 | 0.87 | 0.87 | 4.67 | 2.9 | 0.003 | 0.67 | 0.0 | 0.04 | 15.39 | 0.00 | 1.949 | 9.55 | 1.48 | 4.3 | 95.7 | 0.0 | 0.12 | 1.07 | 0.86 | 0.90 | 3.50 | 36345 | 4397 | 21 | 69 | 7 | 0 | 0 | logfile |
✔ | 6oGZ | 20060 | 2023-11-18 | 2019-04-03 | 3.6 | 3.85 | — | 3.8 | 0.008 | 0.90 | 0.0 | 0.06 | 15.82 | 0.01 | 2.244 | 5.40 | 0.17 | 4.2 | 95.8 | 0.0 | -5.51 | 0.47 | 0.86 | 2.42 | 3.8 | 0.002 | 0.60 | 0.0 | 0.04 | 17.26 | 0.00 | 2.036 | 9.18 | 0.37 | 2.7 | 97.3 | 0.0 | -1.75 | 1.44 | 0.44 | 0.85 | 1.69 | 74962 | 9081 | 14 | 35 | 2 | 0 | 0 | logfile |
✘ | 6PLR | 20373 | 2023-11-16 | 2019-07-01 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14685 | 1735 | 15 | 0 | 75 | 0 | 0 | logfile |
✘ | 8ERA | 28551 | 2023-11-20 | 2022-10-11 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29054 | 3644 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7ZoL | 14847 | 2023-11-16 | 2022-04-26 | 3.03 | 3.33 | 3.14 | 3.3 | 0.003 | 0.64 | 0.0 | 0.05 | 16.53 | 0.00 | 2.216 | 6.74 | 0.20 | 6.5 | 92.6 | 0.8 | -0.47 | 0.69 | 0.74 | 1.68 | 3.3 | 0.004 | 0.67 | 0.0 | 0.04 | 17.14 | 0.00 | 2.167 | 8.79 | 0.20 | 7.5 | 91.9 | 0.6 | -0.62 | 0.38 | 0.68 | 0.77 | 2.06 | 15440 | 1852 | 4 | 39 | 4 | 0 | 0 | logfile |
✔ | 7oTV | 13067 | 2023-11-20 | 2021-06-10 | 3.24 | 3.53 | — | 3.4 | 0.012 | 0.79 | 0.0 | 0.10 | 14.61 | 0.01 | 2.090 | 10.98 | 0.34 | 8.5 | 91.4 | 0.1 | -1.18 | 0.71 | 0.65 | 0.82 | 3.4 | 0.003 | 0.73 | 0.0 | 0.04 | 16.70 | 0.00 | 2.146 | 10.78 | 0.25 | 5.8 | 94.1 | 0.1 | -0.43 | 0.90 | 0.77 | 0.77 | 0.88 | 29041 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 7MoA | 23922 | 2023-11-15 | 2021-05-01 | 4.9 | 4.75 | — | 4.0 | 0.011 | 1.37 | 0.0 | 0.08 | 18.23 | 0.01 | 1.983 | 27.58 | 10.24 | 8.6 | 91.0 | 0.5 | -1.69 | 0.83 | 0.76 | — | 3.9 | 0.003 | 0.72 | 0.0 | 0.05 | 13.33 | 0.00 | 2.133 | 15.77 | 0.00 | 4.8 | 95.2 | 0.1 | -1.11 | 0.92 | 0.84 | 0.78 | — | 12511 | 1580 | 5 | 0 | 12 | 0 | 0 | logfile |
✔ | 7TAX | 25789 | 2023-11-19 | 2021-12-21 | 2.8 | 3.31 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.14 | 0.01 | 2.236 | 6.32 | 0.00 | 4.6 | 95.4 | 0.0 | -0.99 | 0.64 | 0.56 | 0.11 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 17.73 | 0.00 | 2.119 | 12.65 | 1.88 | 5.0 | 95.0 | 0.0 | -0.04 | 1.23 | 0.77 | 0.84 | 2.34 | 27855 | 3349 | 14 | 99 | 0 | 0 | 0 | logfile |
✔ | 7TJ5 | 25916 | 2023-11-15 | 2022-01-14 | 2.41 | 3.25 | 2.42 | 2.9 | 0.006 | 1.92 | 0.0 | 0.05 | 19.67 | 0.01 | 2.285 | 5.53 | 0.22 | 5.4 | 94.6 | 0.0 | 0.48 | 0.69 | 0.71 | 2.97 | 2.9 | 0.004 | 0.71 | 0.0 | 0.04 | 17.03 | 0.00 | 2.324 | 7.48 | 1.04 | 3.7 | 96.3 | 0.0 | 2.04 | 1.48 | 0.73 | 0.89 | 2.36 | 13152 | 1568 | 8 | 0 | 32 | 0 | 0 | logfile |
✔ | 6XEU | 22150 | 2023-11-15 | 2020-06-13 | 3.2 | 3.84 | — | 3.7 | 0.008 | 0.82 | 4.0 | 0.06 | 15.57 | 0.01 | 2.387 | 2.63 | 2.83 | 11.3 | 88.7 | 0.0 | -2.88 | 0.76 | 0.88 | 3.94 | 3.7 | 0.002 | 0.60 | 0.0 | 0.04 | 15.55 | 0.00 | 2.305 | 3.25 | 0.00 | 5.2 | 94.8 | 0.0 | 0.16 | 0.37 | 0.77 | 0.89 | 2.92 | 10544 | 1312 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 7APX | 11859 | 2023-11-17 | 2020-10-20 | 3.4 | 4.19 | — | 4.0 | 0.006 | 0.76 | 0.0 | 0.05 | 16.32 | 0.00 | 2.090 | 9.36 | 9.74 | 6.3 | 93.6 | 0.1 | -2.30 | 0.83 | 0.83 | 1.26 | 4.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.85 | 0.00 | 2.171 | 7.03 | 0.22 | 5.2 | 94.8 | 0.0 | 1.33 | 0.46 | 0.81 | 0.80 | 1.12 | 20552 | 2870 | 6 | 0 | 19 | 0 | 0 | logfile |
✔ | 6YRF | 10888 | 2023-11-19 | 2020-04-20 | 3.9 | 4.58 | — | 4.2 | 0.006 | 0.78 | 0.0 | 0.05 | 14.50 | 0.00 | 2.028 | 27.54 | 0.21 | 12.8 | 87.1 | 0.1 | -3.65 | 0.91 | 0.84 | 1.12 | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 15.77 | 0.00 | 2.084 | 16.66 | 0.43 | 10.1 | 89.9 | 0.0 | -0.77 | 0.56 | 0.91 | 0.82 | 0.90 | 24828 | 3108 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTM | 13062 | 2023-11-20 | 2021-06-10 | 3.33 | 3.97 | — | 3.7 | 0.008 | 0.93 | 1.0 | 0.05 | 14.51 | 0.01 | 2.071 | 16.56 | 0.28 | 9.2 | 90.6 | 0.2 | -1.79 | 0.82 | 0.77 | 1.32 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 15.94 | 0.00 | 2.146 | 11.32 | 0.16 | 6.4 | 93.6 | 0.0 | -0.53 | 1.41 | 0.84 | 0.80 | 0.80 | 29040 | 3636 | 1 | 0 | 21 | 0 | 0 | logfile |
✔ | 8FHN | 29096 | 2023-11-15 | 2022-12-14 | 3.0 | 3.42 | 3.14 | 3.4 | 0.009 | 0.99 | 1.0 | 0.06 | 14.62 | 0.01 | 2.199 | 6.72 | 2.21 | 4.7 | 95.3 | 0.0 | -1.79 | 0.69 | 0.88 | 3.88 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 16.07 | 0.00 | 2.199 | 5.34 | 1.45 | 2.3 | 97.7 | 0.1 | 0.29 | 0.42 | 0.66 | 0.88 | 3.00 | 13613 | 1722 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7F02 | 31394 | 2023-11-14 | 2021-06-03 | 3.24 | 3.61 | — | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 14.12 | 0.00 | 1.895 | 8.78 | 0.00 | 8.7 | 91.1 | 0.2 | -1.36 | 0.69 | 0.81 | 2.02 | 3.5 | 0.003 | 0.69 | 0.0 | 0.04 | 15.99 | 0.00 | 1.940 | 9.00 | 0.33 | 8.1 | 91.9 | 0.0 | -0.43 | 0.93 | 0.65 | 0.83 | 2.07 | 8835 | 1130 | 9 | 0 | 5 | 0 | 0 | logfile |
✘ | 6TAY | 10430 | 2023-11-21 | 2019-10-31 | 3.2 | 2.55 | — | 2.9 | 0.011 | 1.15 | 0.0 | 0.06 | 11.27 | 0.01 | 2.066 | 4.61 | 0.28 | 8.9 | 91.0 | 0.1 | -3.72 | 0.86 | 0.82 | 3.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35241 | 4350 | 1 | 0 | 71 | 0 | 0 | logfile |
✔ | 6KiX | 0694 | 2023-11-19 | 2019-07-20 | 4.1 | 4.17 | — | 4.1 | 0.006 | 0.84 | 0.0 | 0.05 | 22.55 | 0.01 | 2.219 | 3.30 | 0.00 | 8.6 | 91.4 | 0.0 | -3.74 | 0.71 | 0.73 | — | 4.1 | 0.003 | 0.62 | 0.0 | 0.04 | 22.98 | 0.00 | 2.129 | 10.13 | 0.00 | 6.1 | 93.9 | 0.0 | -1.25 | 0.83 | 0.73 | 0.76 | — | 19900 | 1763 | 15 | 290 | 1 | 0 | 0 | logfile |