Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YCX	33741	2023-08-11	2022-07-02	4.18	4.23	4.26	4.0	0.004	0.63	1.0	0.04	14.07	0.00	1.722	11.71	0.18	5.5	94.3	0.2	0.51	0.85	0.76	—	4.0	0.003	0.64	0.0	0.04	14.37	0.00	1.812	12.31	0.02	4.7	95.2	0.1	0.81	0.47	0.87	0.80	—	113089	14682	42	104	69	0	0	logfile
✔	8DBP	27297	2023-08-23	2022-06-14	3.6	4.03	3.50	3.6	0.010	1.20	1.0	0.06	14.31	0.01	1.714	2.50	1.39	2.4	97.5	0.1	-1.13	0.77	0.84	2.09	3.6	0.003	0.69	0.0	0.04	15.11	0.00	1.915	9.51	0.26	2.3	97.7	0.0	1.22	0.80	0.78	0.85	1.81	36622	4800	28	0	11	0	0	logfile
✔	7TU5	26126	2023-08-24	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.006	0.58	0.0	0.04	16.46	0.00	1.927	5.68	2.06	1.7	98.3	0.0	1.28	0.78	0.87	0.87	5.20	19656	2574	18	0	6	6	0	logfile
✘	7K1B	22623	2023-08-20	2020-09-07	4.3	4.45	—	4.3	0.005	1.05	0.0	0.06	17.37	0.01	2.268	7.67	0.55	12.2	87.5	0.3	-4.94	0.79	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29321	3589	4	48	0	0	0	logfile
✔	8F3E	28848	2023-08-17	2022-11-10	3.09	3.38	3.21	3.4	0.003	0.52	0.0	0.04	9.85	0.00	2.213	7.20	2.91	1.9	98.1	0.0	1.77	0.61	0.64	1.05	3.4	0.003	0.59	0.0	0.04	15.62	0.00	2.070	10.09	0.40	1.8	98.2	0.0	1.68	1.75	0.63	0.80	1.92	23627	3095	3	0	0	0	0	logfile
✔	6UM2	20816	2023-08-13	2019-10-08	4.32	4.49	—	4.3	0.013	1.78	10.0	0.09	15.37	0.01	1.505	10.33	0.41	6.7	92.9	0.4	-4.93	0.73	0.67	—	4.3	0.005	0.83	0.0	0.05	13.78	0.01	2.093	16.94	0.00	14.1	85.8	0.1	-3.87	1.39	0.80	0.76	—	13094	1686	3	0	7	0	0	logfile
✔	7RKV	24504	2023-08-21	2021-07-22	3.45	4.38	—	3.9	0.009	1.34	18.0	0.08	11.74	0.01	1.829	14.29	0.54	3.6	96.4	0.0	0.06	0.76	0.54	2.12	3.9	0.005	0.69	0.0	0.04	13.12	0.00	2.160	10.23	0.07	3.6	96.4	0.0	0.69	1.19	0.84	0.83	2.39	31357	4278	12	0	39	0	0	logfile
✔	6DS5	8909	2023-08-13	2018-06-13	3.8	3.93	—	3.9	0.011	1.38	0.0	0.07	11.62	0.01	2.235	5.84	2.01	13.9	86.1	0.0	-5.69	0.66	0.86	4.25	3.9	0.003	0.71	0.0	0.05	14.37	0.00	2.185	9.34	0.47	8.2	91.8	0.0	-2.71	2.27	0.66	0.85	2.67	13970	1760	22	0	22	0	0	logfile
✔	6WMP	21850	2023-08-17	2020-04-21	2.98	3.16	—	3.1	0.011	0.93	0.0	0.06	18.47	0.01	1.965	9.61	12.01	13.6	86.2	0.2	-5.30	0.72	0.83	2.98	3.1	0.003	0.65	0.0	0.04	18.62	0.00	1.987	8.00	7.34	8.8	91.1	0.1	-2.03	0.45	0.72	0.84	2.33	22296	2879	9	47	3	0	0	logfile
✔	7UK5	26575	2023-08-10	2022-03-31	2.76	3.16	2.85	3.1	0.004	0.58	0.0	0.04	12.96	0.01	2.139	7.69	0.00	3.1	96.9	0.0	1.44	0.62	0.85	3.74	3.1	0.002	0.51	0.0	0.04	14.52	0.00	2.343	8.62	0.95	2.3	97.7	0.0	2.74	0.32	0.53	0.82	3.12	8000	1036	5	0	4	0	0	logfile
✔	7UKC	26576	2023-08-10	2022-04-01	3.0	3.39	2.98	3.3	0.006	0.67	0.0	0.04	12.54	0.00	2.127	8.37	0.24	3.1	96.9	0.0	0.47	0.66	0.87	3.11	3.3	0.003	0.59	0.0	0.04	15.43	0.00	2.216	8.80	1.54	2.7	97.3	0.0	1.94	0.38	0.66	0.86	2.76	8000	1036	6	0	4	0	0	logfile
✔	8F4R	28857	2023-08-17	2022-11-11	3.06	3.36	3.18	3.3	0.004	0.56	0.0	0.04	10.45	0.00	2.212	7.54	3.22	1.2	98.7	0.0	1.85	0.75	0.81	2.80	3.3	0.003	0.52	0.0	0.04	14.45	0.00	2.078	7.71	0.28	1.2	98.8	0.0	1.93	1.23	0.72	0.87	2.65	23675	3097	4	0	1	0	0	logfile
✔	7F66	31474	2023-08-22	2021-06-24	2.76	3.34	—	3.1	0.002	0.52	0.0	0.04	12.56	0.00	2.091	6.49	0.00	4.6	95.4	0.0	0.55	0.83	0.87	3.31	3.1	0.003	0.56	0.0	0.04	14.64	0.00	2.210	7.05	0.87	4.7	95.3	0.0	0.97	0.35	0.80	0.86	2.95	33739	4547	15	0	14	0	0	logfile
✔	6FN1	4281	2023-08-12	2018-02-02	3.58	3.73	—	3.7	0.009	1.43	0.0	0.08	11.89	0.01	2.115	8.23	0.58	6.4	93.4	0.2	-3.97	0.67	0.77	2.49	3.7	0.003	0.81	0.0	0.05	14.90	0.00	2.057	10.74	0.07	4.8	95.2	0.1	-0.20	0.65	0.73	0.79	1.96	12739	1627	4	0	5	0	0	logfile
✔	8HMY	34904	2023-08-12	2022-12-06	2.94	3.24	3.07	3.2	0.005	0.85	3.0	0.05	16.57	0.01	2.137	7.76	7.49	5.5	94.3	0.2	-2.35	0.65	0.74	2.32	3.2	0.005	0.68	0.0	0.04	17.27	0.00	2.015	8.50	5.97	4.8	95.2	0.1	0.19	1.20	0.67	0.80	2.11	11675	1368	7	90	6	0	0	logfile
✔	7TCP	25816	2023-08-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	7T9A	25754	2023-08-16	2021-12-18	3.54	3.88	3.56	3.7	0.022	1.74	3.0	0.13	12.01	0.02	2.315	1.30	2.68	3.6	95.7	0.7	0.35	0.80	0.84	3.40	3.7	0.005	0.72	0.0	0.05	13.92	0.00	2.180	8.20	0.18	5.7	94.2	0.1	-0.41	1.26	0.81	0.85	3.17	21517	2598	41	0	96	0	0	logfile
✔	6VQ6	21317	2023-08-12	2020-02-04	3.9	4.53	—	4.2	0.009	0.95	1.0	0.06	10.96	0.00	1.809	2.38	0.30	2.6	97.2	0.3	0.63	0.77	0.71	1.23	4.2	0.004	0.87	0.0	0.05	14.54	0.00	1.947	20.63	0.28	4.4	95.6	0.0	0.55	1.81	0.81	0.82	0.92	62385	8454	35	0	2	0	0	logfile
✔	8DBV	27310	2023-08-23	2022-06-14	3.7	4.08	3.54	3.6	0.010	1.23	1.0	0.06	14.51	0.01	1.749	3.85	1.86	2.9	97.1	0.0	-1.46	0.77	0.82	1.86	3.7	0.003	0.69	0.0	0.04	15.37	0.00	1.932	9.64	0.24	2.7	97.3	0.0	0.92	1.33	0.78	0.85	1.60	36862	4837	28	0	11	0	0	logfile
✔	8F4N	28855	2023-08-14	2022-11-11	2.95	3.15	3.04	3.2	0.004	0.55	0.0	0.04	9.96	0.00	2.278	8.28	2.12	1.9	98.1	0.0	2.00	0.72	0.80	3.23	3.2	0.003	0.54	0.0	0.04	15.74	0.00	2.085	9.21	2.18	1.4	98.6	0.0	2.01	1.26	0.69	0.85	2.77	15574	2043	2	0	0	0	0	logfile

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