Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JM3	22384	2021-05-15	2020-07-30	3.4	3.43	—	3.4	0.013	0.96	0.0	0.06	15.30	0.01	0.521	21.42	0.00	10.1	89.5	0.4	-6.47	0.55	0.72	1.95	3.4	0.006	0.77	0.0	0.04	17.71	0.01	1.901	13.38	0.44	8.1	91.6	0.4	-1.48	1.53	0.59	0.81	2.64	235260	15060	60	0	0	0	118860	logfile
✔	7JJP	22358	2021-05-06	2020-07-27	1.94	2.15	2.08	2.1	0.011	1.21	0.0	0.07	14.56	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.002	0.54	0.0	0.04	14.98	0.00	2.108	7.63	0.61	0.9	99.1	0.0	3.79	0.93	0.71	0.86	4.90	40920	2352	36	0	180	396	19104	logfile
✔	6NTS	0510	2021-05-03	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.28	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.41	0.00	1.738	7.03	0.00	2.5	97.5	0.0	0.88	2.54	0.92	0.84	1.32	9956	1240	5	0	3	0	0	logfile
✔	6W8U	21578	2021-05-06	2020-03-21	3.8	4.14	—	4.0	0.004	0.54	0.0	0.05	12.25	0.00	2.062	10.46	0.48	4.4	95.6	0.0	-2.73	0.64	0.87	1.74	4.0	0.003	0.58	0.0	0.05	15.21	0.01	2.051	11.90	0.29	3.4	96.6	0.0	-0.62	1.16	0.64	0.85	1.27	41082	5740	41	0	0	0	0	logfile
✔	6VZ1	21481	2021-05-03	2020-02-27	3.2	3.35	—	3.4	0.016	1.51	0.0	0.06	19.74	0.01	1.864	10.74	0.00	12.0	88.0	0.0	-4.38	0.59	0.86	3.07	3.4	0.003	0.67	0.0	0.04	17.39	0.00	2.179	8.30	0.14	5.3	94.7	0.0	-0.55	0.99	0.57	0.84	2.37	7112	822	4	0	6	0	0	logfile
✔	6W8X	21579	2021-05-05	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.22	0.00	4.3	95.7	0.0	-2.19	0.59	0.85	2.04	3.6	0.004	0.60	0.0	0.05	13.33	0.00	2.082	7.43	0.21	2.9	97.1	0.0	-0.11	0.36	0.59	0.86	1.99	29766	4356	33	0	0	0	0	logfile
✔	6ZNM	11317	2021-05-04	2020-07-06	4.1	4.41	3.90	4.1	0.013	1.75	0.0	0.09	13.25	0.00	1.790	1.77	0.00	7.2	92.6	0.1	-2.56	0.77	0.75	—	4.1	0.004	0.71	0.0	0.04	12.97	0.00	2.053	12.18	0.00	4.7	95.2	0.1	-0.03	0.96	0.81	0.84	—	19253	2470	15	0	138	0	0	logfile
✔	6WPK	21863	2021-05-06	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.72	0.65	7.9	92.0	0.0	-3.83	0.75	0.84	2.02	3.3	0.004	0.76	0.0	0.04	16.40	0.01	2.327	7.26	0.27	6.3	93.7	0.0	0.54	0.46	0.74	0.83	1.41	33229	4376	8	0	0	0	0	logfile
✔	6UW4	20917	2021-05-04	2019-11-04	3.1	3.24	—	3.2	0.010	0.97	0.0	0.06	17.92	0.01	2.280	3.97	0.00	5.8	94.2	0.0	-4.45	0.72	0.84	1.94	3.2	0.002	0.56	0.0	0.04	16.57	0.00	2.179	6.32	0.23	5.5	94.5	0.0	0.21	0.48	0.71	0.84	1.22	20281	2412	8	0	21	0	0	logfile
✔	6WCZ	21618	2021-05-03	2020-03-31	4.0	4.24	—	4.0	0.009	1.22	0.0	0.06	12.53	0.01	2.085	14.55	2.55	12.9	87.1	0.0	-4.79	0.82	0.77	—	4.0	0.003	0.76	0.0	0.04	15.24	0.01	2.015	15.82	0.47	7.0	93.0	0.0	-1.20	1.77	0.83	0.77	—	9894	1231	2	0	2	0	0	logfile
✔	6M39	30071	2021-05-05	2020-03-03	3.55	3.63	—	3.6	0.009	1.24	0.0	0.07	11.89	0.01	2.271	7.44	1.23	9.7	90.3	0.0	-4.52	0.73	0.80	2.70	3.6	0.005	0.76	0.0	0.05	14.89	0.00	2.127	16.13	0.99	9.8	90.2	0.0	-2.13	0.85	0.74	0.82	2.10	22716	2811	6	0	54	0	0	logfile
✘	6LQJ	0947	2021-05-04	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.76	0.0	0.05	16.29	0.00	2.216	11.00	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17100	2214	18	0	0	0	0	logfile
✔	7BTi	30179	2021-05-04	2020-04-01	3.6	3.69	—	3.6	0.010	0.86	0.0	0.06	16.57	0.01	2.083	5.58	10.93	5.7	94.1	0.2	-4.46	0.75	0.88	2.31	3.6	0.003	0.63	0.0	0.04	15.29	0.00	2.059	8.12	0.19	5.5	94.5	0.0	-1.01	0.55	0.74	0.88	1.96	14650	1860	13	0	10	0	0	logfile
✔	6WJ6	21690	2021-05-04	2020-04-12	2.58	2.50	—	2.7	0.024	2.71	0.0	0.08	18.30	0.02	2.082	12.63	0.00	2.1	97.8	0.1	-3.58	0.69	0.84	4.27	2.7	0.005	0.65	0.0	0.05	18.06	0.01	2.128	11.52	1.69	2.4	97.6	0.0	0.63	0.41	0.69	0.84	3.65	18884	1901	32	0	70	198	0	logfile
✔	6YW7	10960	2021-05-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	1.63	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.99	0.0	0.01	5.30	0.00	2.336	9.92	0.00	16.8	83.0	0.2	-3.04	6.98	0.80	0.74	—	5426	1788	9	0	2	0	0	logfile
✘	6WTi	21897	2021-05-03	2020-05-02	2.38	2.42	—	2.5	0.009	1.16	5.0	0.07	18.54	0.01	1.179	8.72	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✘	6VYi	21461	2021-05-03	2020-02-26	3.0	3.28	—	3.2	0.012	1.20	0.0	0.05	18.80	0.00	2.157	10.51	0.00	11.2	88.8	0.0	-2.99	0.66	0.87	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6916	812	4	0	4	0	0	logfile
✔	6YJ6	10817	2021-05-05	2020-04-02	3.1	3.39	3.09	3.3	0.008	0.85	0.0	0.05	9.60	0.00	2.082	2.42	0.07	5.1	94.7	0.1	-4.59	0.73	0.77	4.44	3.3	0.003	0.57	0.0	0.04	13.85	0.00	2.016	5.80	0.00	5.7	94.3	0.0	-0.48	0.75	0.74	0.79	3.19	26878	1635	3	0	22	0	13353	logfile
✔	6ZNN	11318	2021-05-04	2020-07-06	4.5	5.10	4.05	4.4	0.014	1.77	0.0	0.09	13.07	0.00	1.790	1.72	0.00	7.7	92.2	0.1	-3.13	0.78	0.72	—	4.4	0.003	0.70	0.0	0.04	12.92	0.00	2.079	16.34	0.05	5.9	94.0	0.1	-0.29	1.06	0.81	0.82	—	19457	2320	17	0	328	0	0	logfile
✔	6VNW	21251	2021-05-05	2020-01-29	3.44	3.62	—	3.6	0.004	0.81	7.0	0.06	14.77	0.00	2.078	13.29	2.05	8.1	91.7	0.1	-3.20	0.68	0.66	1.23	3.6	0.007	0.81	0.0	0.05	16.50	0.01	2.095	13.99	0.52	8.2	91.8	0.0	-0.87	2.08	0.77	0.80	1.66	27486	3831	8	0	0	0	0	logfile

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