Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SL9	25195	2022-11-29	2021-10-23	3.5	3.79	—	3.7	0.005	0.95	0.0	0.06	13.95	0.01	2.259	4.68	0.40	5.9	94.1	0.0	-6.01	0.64	0.82	2.99	3.7	0.003	0.80	0.0	0.04	15.47	0.00	2.140	13.71	1.01	5.2	94.8	0.0	-1.21	1.23	0.64	0.82	1.53	4712	619	3	0	1	0	0	logfile
✔	7PY2	13708	2022-11-29	2021-10-08	2.59	2.64	1.53	2.7	0.015	1.83	0.0	0.08	17.26	0.01	2.423	1.71	2.00	9.1	90.9	0.0	-5.22	0.45	0.84	6.05	2.8	0.004	0.86	0.0	0.05	18.18	0.00	2.155	2.93	4.00	5.2	94.8	0.0	-3.95	1.38	0.50	0.88	5.97	2152	316	4	0	0	0	0	logfile
✔	7VQQ	32092	2022-11-29	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7QiC	13987	2022-11-29	2021-12-14	4.1	4.27	4.00	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.16	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.004	0.67	0.0	0.04	12.50	0.00	2.189	13.77	0.20	8.4	91.6	0.0	-0.07	1.38	0.65	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7AR8	11876	2022-11-29	2020-10-23	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	61461	7676	64	0	55	0	0	logfile
✘	7TLY	25990	2022-11-29	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.30	2.0	0.08	9.90	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3105	408	4	0	4	0	0	logfile
✔	7WD8	32434	2022-11-29	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	9.18	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.4	0.005	0.82	0.0	0.05	12.56	0.01	2.093	19.99	0.00	7.2	92.6	0.2	-0.59	1.67	0.64	0.68	—	4029	524	4	0	0	0	0	logfile
✔	7L7H	23212	2022-11-29	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.005	0.99	0.0	0.06	16.55	0.00	2.113	18.49	1.96	32.1	67.9	0.0	-4.69	0.91	0.51	0.65	—	2430	352	8	0	0	0	0	logfile
✔	7T4L	25679	2022-11-29	2021-12-10	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6062	755	2	0	0	0	0	logfile
✔	7PDD	13334	2022-11-29	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	21.59	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.76	0.0	0.04	13.98	0.00	2.150	21.36	0.00	5.3	94.7	0.0	-1.30	1.86	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7PDH	13338	2022-11-29	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.54	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.003	0.69	0.0	0.04	16.40	0.00	2.171	14.54	0.00	6.7	93.3	0.0	-0.70	0.53	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7QiA	13985	2022-11-29	2021-12-14	3.5	3.73	3.29	3.6	0.003	0.60	0.0	0.04	12.91	0.00	2.259	11.63	0.00	7.9	92.1	0.0	-1.03	0.65	0.80	1.56	3.7	0.004	0.65	0.0	0.04	14.70	0.00	2.208	11.94	0.20	7.7	92.3	0.0	-0.31	1.33	0.62	0.80	1.30	4843	639	4	0	0	3	0	logfile
✔	7W9F	32366	2022-11-29	2021-12-09	3.6	2.59	—	2.2	0.003	0.72	0.0	0.05	13.99	0.01	2.302	3.47	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.66	0.0	0.04	16.05	0.00	2.090	11.05	0.37	4.4	95.6	0.0	-1.09	0.54	0.74	0.73	1.89	4856	625	3	0	0	0	0	logfile
✔	7PPJ	13581	2022-11-29	2021-09-14	3.44	3.68	3.46	3.7	0.005	0.72	0.0	0.05	14.04	0.00	2.245	15.35	1.20	6.8	92.9	0.3	-3.05	0.72	0.75	2.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5175	643	1	0	1	0	0	logfile
✔	7F9W	31499	2022-11-29	2021-07-05	3.2	3.72	—	3.6	0.005	0.68	0.0	0.04	12.99	0.00	2.114	9.28	0.63	4.5	95.5	0.0	0.24	0.76	0.80	3.40	3.6	0.003	0.68	0.0	0.04	15.67	0.00	2.132	9.06	1.06	3.7	96.3	0.0	0.29	0.50	0.77	0.81	2.81	4217	547	3	0	0	0	0	logfile
✔	7RFE	24439	2022-11-29	2021-07-14	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59096	3800	16	0	32	0	29576	logfile
✘	7WK8	32562	2022-11-29	2022-01-08	3.61	2.50	—	2.3	0.002	0.52	0.0	0.04	6.81	0.00	2.270	7.76	0.00	4.5	95.3	0.2	-1.21	0.77	0.74	4.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3982	516	4	0	0	0	0	logfile
✔	7TLZ	25991	2022-11-29	2022-01-19	3.3	3.47	3.24	3.4	0.010	1.29	0.0	0.07	9.18	0.01	2.581	1.02	0.31	2.8	97.2	0.0	1.02	0.68	0.81	5.51	3.4	0.004	0.65	0.0	0.05	12.74	0.00	2.306	4.22	0.00	4.2	95.8	0.0	0.59	1.01	0.69	0.87	5.73	3621	475	3	0	6	0	0	logfile
✔	7TAS	25783	2022-11-29	2021-12-21	3.2	3.49	3.25	3.4	0.013	1.49	0.0	0.09	11.42	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.66	0.0	0.04	13.84	0.00	2.239	5.45	0.34	3.9	96.1	0.0	-0.14	0.52	0.65	0.85	4.09	3147	417	4	0	3	0	0	logfile
✔	7PAG	13269	2022-11-29	2021-07-29	4.0	4.22	—	4.1	0.004	0.74	0.0	0.05	13.83	0.01	2.177	12.91	0.00	6.3	93.7	0.0	-1.70	0.30	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4040	509	1	0	4	0	0	logfile

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