Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTA	12586	2022-07-05	2021-03-09	3.5	3.71	3.63	3.6	0.004	0.64	0.0	0.05	14.12	0.00	2.050	7.13	0.00	4.1	95.9	0.0	-1.38	0.80	0.81	2.51	3.6	0.002	0.57	0.0	0.05	15.02	0.00	2.009	5.83	0.14	4.0	96.0	0.0	-0.68	0.36	0.79	0.79	2.24	26805	3261	34	0	80	89	0	logfile
✔	7KFH	22853	2022-07-04	2020-10-13	3.8	3.87	—	3.8	0.021	1.75	0.0	0.11	10.20	0.01	2.360	0.56	0.21	1.8	97.8	0.4	1.11	0.69	0.85	3.27	3.7	0.003	0.65	0.0	0.04	13.82	0.00	2.167	8.03	0.71	2.8	97.1	0.2	0.16	1.36	0.70	0.85	2.45	13575	1695	21	0	30	0	0	logfile
✘	7EFC	31083	2022-07-04	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7KFB	22848	2022-07-03	2020-10-13	3.9	3.46	—	3.4	0.022	1.84	3.0	0.12	9.33	0.01	2.486	1.77	0.22	1.3	98.2	0.6	0.66	0.69	0.82	3.59	3.4	0.005	0.72	0.0	0.05	14.08	0.01	2.105	11.13	0.51	3.5	96.1	0.4	-0.58	1.37	0.67	0.76	2.96	13458	1665	24	0	42	0	0	logfile
✔	7o85	12761	2022-07-06	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	3.5	0.004	0.61	0.0	0.04	15.42	0.01	2.106	10.96	0.32	5.0	95.0	0.0	-0.97	0.55	0.74	0.81	3.18	28525	3843	28	0	14	0	0	logfile
✘	7ALN	11818	2022-07-04	2020-10-06	3.77	3.85	—	3.8	0.009	0.95	0.0	0.06	10.60	0.01	1.198	10.50	0.22	4.1	95.8	0.0	-3.95	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20789	2616	11	0	13	0	0	logfile
✔	6Xi8	22191	2022-07-03	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.14	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	0.99	0.0	0.05	17.21	0.01	2.201	19.25	0.97	9.0	91.0	0.0	-2.46	1.27	0.69	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	7KUE	23036	2022-07-03	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.40	0.01	2.205	5.94	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.1	0.009	1.32	0.0	0.05	17.12	0.01	2.220	14.64	0.97	8.2	91.8	0.0	-2.42	1.32	0.72	0.71	1.56	4726	577	4	0	2	0	0	logfile
✔	7BZW	30261	2022-07-03	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.003	0.87	0.0	0.06	14.64	0.01	2.267	19.17	0.00	16.2	83.8	0.0	-2.75	1.57	0.93	0.86	—	9756	1212	12	0	0	0	0	logfile
✔	7A02	11591	2022-07-04	2020-08-06	3.0	3.22	—	3.2	0.008	0.74	0.0	0.05	12.61	0.00	2.323	8.00	0.00	8.2	91.8	0.0	-1.94	0.60	0.85	3.93	3.2	0.005	0.68	0.0	0.05	15.22	0.00	2.114	6.47	5.80	7.0	93.0	0.0	-1.24	0.95	0.59	0.88	4.20	18699	2576	23	0	0	0	0	logfile
✔	7CBL	30335	2022-07-06	2020-06-12	2.8	3.16	—	3.1	0.006	0.59	0.0	0.05	14.82	0.00	2.161	5.24	5.25	3.0	96.8	0.2	-2.55	0.78	0.87	2.70	3.1	0.006	0.63	0.0	0.05	16.37	0.00	2.131	5.99	4.58	3.5	96.5	0.0	-0.59	0.42	0.74	0.87	2.62	99242	13364	78	0	26	0	0	logfile
✔	6ZH5	11214	2022-07-06	2020-06-21	2.7	3.69	—	3.3	0.007	0.73	0.0	0.04	18.44	0.00	2.015	9.01	12.67	1.1	98.9	0.0	-2.77	0.85	0.86	1.93	3.3	0.005	0.75	0.0	0.04	18.47	0.00	1.415	11.28	3.56	1.9	98.1	0.0	3.70	0.62	0.83	0.84	1.80	34408	4272	35	0	16	0	0	logfile
✔	7CBM	30336	2022-07-05	2020-06-12	3.2	3.68	—	3.7	0.003	0.48	0.0	0.04	9.89	0.00	2.132	7.97	2.78	4.4	95.6	0.0	0.73	0.56	0.84	2.14	3.7	0.006	0.71	2.0	0.04	14.53	0.00	1.714	14.44	0.24	5.0	95.0	0.0	0.46	0.62	0.54	0.85	1.82	87698	11818	40	0	0	0	0	logfile
✔	7AUE	11927	2022-07-03	2020-11-02	2.97	2.67	—	2.8	0.006	0.79	2.0	0.05	13.82	0.01	2.077	1.90	0.11	4.2	95.8	0.0	-4.47	0.62	0.84	3.98	2.8	0.004	0.65	2.0	0.05	16.61	0.00	2.215	5.01	1.38	3.4	96.6	0.0	-1.28	2.17	0.62	0.86	3.47	8755	1129	8	0	5	1	0	logfile
✔	7KF9	22847	2022-07-03	2020-10-13	4.4	5.43	—	4.5	0.021	1.87	0.0	0.11	10.54	0.01	2.470	1.27	0.43	2.4	97.6	0.0	0.37	0.68	0.77	—	4.5	0.004	0.74	0.0	0.05	11.77	0.00	2.104	23.39	0.00	5.7	94.3	0.0	-0.10	0.84	0.69	0.81	—	13161	1662	18	0	24	0	0	logfile
✔	7KEW	22841	2022-07-03	2020-10-13	4.16	4.63	—	4.4	0.021	1.87	3.0	0.11	9.60	0.01	2.402	1.08	0.00	3.2	96.5	0.4	0.12	0.59	0.68	—	4.4	0.004	0.82	0.0	0.05	12.77	0.01	2.102	17.23	0.00	7.6	92.4	0.0	-1.15	1.65	0.61	0.74	—	13173	1650	21	0	24	0	0	logfile
✔	7CG7	30351	2022-07-07	2020-06-30	3.61	3.98	—	3.9	0.005	0.66	0.0	0.04	12.61	0.00	2.027	9.40	2.26	5.6	94.4	0.0	-2.97	0.77	0.82	1.47	3.9	0.004	0.62	0.0	0.04	15.70	0.00	2.122	12.09	0.46	0.5	99.5	0.0	0.17	1.50	0.76	0.81	1.71	40290	5100	34	0	0	0	0	logfile
✔	7KEX	22842	2022-07-03	2020-10-13	4.25	4.92	—	4.4	0.021	1.86	0.0	0.12	11.19	0.01	2.479	1.69	0.22	3.0	96.4	0.6	0.58	0.61	0.74	—	4.4	0.006	0.83	0.0	0.05	12.70	0.01	2.047	21.29	0.15	7.4	92.6	0.0	-0.96	1.93	0.62	0.80	—	12909	1620	21	0	27	0	0	logfile
✔	7CGB	30354	2022-07-04	2020-07-01	3.4	4.20	—	3.8	0.004	0.79	21.0	0.05	13.10	0.00	2.035	15.83	1.60	5.2	94.6	0.1	-1.64	0.59	0.80	1.16	3.8	0.003	0.70	0.0	0.04	14.79	0.00	2.098	17.79	0.42	6.6	93.4	0.0	-1.32	0.53	0.60	0.81	1.09	64834	8822	22	0	0	0	0	logfile
✔	7CP9	30421	2022-07-03	2020-08-06	3.0	3.22	—	3.2	0.007	1.24	0.0	0.04	16.75	0.00	2.183	8.69	7.05	6.5	93.5	0.0	-2.50	0.57	0.74	2.84	3.2	0.003	0.76	0.0	0.04	18.07	0.00	2.113	9.32	3.35	3.7	96.3	0.0	0.54	0.67	0.58	0.76	2.03	8530	1021	16	0	11	0	0	logfile

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