Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NPY	0476	2023-02-18	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.91	0.0	0.05	17.24	0.00	2.196	17.30	0.60	10.2	89.8	0.0	-2.29	1.10	0.78	0.70	0.72	7586	965	3	0	1	0	0	logfile
✔	6T64	10384	2023-02-27	2019-10-17	3.7	3.73	—	3.7	0.006	0.87	0.0	0.05	15.20	0.01	2.307	7.58	0.53	6.0	94.0	0.0	-3.28	0.50	0.76	2.25	3.7	0.003	0.66	0.0	0.04	16.37	0.00	2.226	9.64	0.24	5.6	94.4	0.0	1.35	1.40	0.51	0.78	1.69	30978	3906	18	0	0	0	0	logfile
✔	3J5P	5778	2023-02-22	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.05	0.00	2.126	17.13	0.41	5.1	94.8	0.1	0.54	2.08	0.73	0.79	0.31	18636	2324	4	0	44	0	0	logfile
✔	7CR4	30447	2023-02-21	2020-08-12	3.9	4.24	—	3.9	0.008	0.65	0.0	0.04	13.14	0.00	1.833	102.61	0.00	4.6	95.4	0.0	-2.89	0.59	0.76	0.53	3.9	0.004	0.87	1.0	0.04	16.37	0.00	2.127	26.14	0.60	2.9	97.1	0.0	0.40	1.42	0.57	0.76	0.47	15988	1968	12	0	4	0	0	logfile
✔	7CR0	30443	2023-02-18	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.59	0.0	0.03	15.47	0.00	2.219	7.51	0.12	3.4	96.6	0.0	2.81	0.56	0.57	0.81	2.63	8188	1004	4	0	0	0	0	logfile
✔	3J5R	5777	2023-02-22	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.91	0.0	0.04	13.17	0.00	2.141	20.76	0.00	6.8	92.9	0.4	0.29	1.77	0.67	0.53	—	17564	2324	4	0	44	0	0	logfile
✔	6ZBH	11155	2023-02-23	2020-06-08	3.6	4.44	3.80	3.9	0.010	1.17	0.0	0.08	13.65	0.01	2.465	0.97	0.00	1.0	99.0	0.0	0.82	0.86	0.76	1.40	3.9	0.002	0.49	0.0	0.03	15.13	0.00	2.128	5.53	0.18	1.1	98.9	0.0	4.23	1.08	0.88	0.81	1.30	19523	1159	4	0	0	0	9896	logfile
✔	7TJ6	25917	2023-02-20	2022-01-14	2.9	3.87	2.92	3.2	0.010	2.23	0.0	0.07	18.62	0.01	2.198	11.24	2.08	4.1	95.9	0.0	0.76	0.70	0.76	1.25	3.4	0.003	0.73	0.0	0.04	16.06	0.00	2.174	10.77	0.74	3.9	96.1	0.0	1.83	1.46	0.72	0.83	1.33	13008	1564	8	0	28	0	0	logfile
✔	7QFP	13946	2023-02-19	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.003	0.77	0.0	0.05	16.83	0.00	2.118	16.48	0.44	11.9	88.0	0.1	-2.89	0.77	0.85	0.76	0.24	9996	1233	1	0	0	0	0	logfile
✔	6WXR	21962	2023-02-19	2020-05-11	3.2	3.68	—	3.6	0.010	0.94	0.0	0.04	14.39	0.01	1.518	10.46	0.19	6.6	93.3	0.1	-3.63	0.71	0.80	2.51	3.6	0.003	0.66	0.0	0.04	15.61	0.00	2.167	7.28	0.19	6.5	93.4	0.1	-0.93	1.17	0.70	0.82	2.25	10409	1303	5	0	12	0	0	logfile
✔	7oR1	13037	2023-02-23	2021-06-04	2.64	3.23	—	3.0	0.011	1.11	0.0	0.35	13.04	0.01	2.262	2.89	1.72	6.0	93.7	0.3	-2.01	0.72	0.85	3.37	3.0	0.003	0.56	0.0	0.04	14.72	0.00	2.270	3.44	1.58	4.1	95.9	0.0	1.56	1.12	0.72	0.86	2.82	19869	2384	16	0	33	52	0	logfile
✔	7VWJ	32154	2023-02-26	2021-11-10	2.6	2.67	—	2.7	0.007	0.72	0.0	0.04	14.07	0.01	1.965	7.48	0.13	2.9	97.0	0.0	0.65	0.77	0.89	4.69	2.6	0.003	0.54	0.0	0.04	16.51	0.00	2.128	6.78	1.47	3.3	96.7	0.0	0.39	0.32	0.77	0.91	4.33	28748	3488	44	0	17	711	0	logfile
✔	7oR0	13036	2023-02-23	2021-06-04	2.64	3.23	2.80	3.0	0.011	1.06	0.0	0.35	13.24	0.01	2.217	2.61	1.15	5.4	94.2	0.3	-1.99	0.72	0.85	3.40	3.0	0.002	0.54	0.0	0.04	14.74	0.00	2.270	3.31	1.72	3.8	96.2	0.0	1.57	1.12	0.71	0.85	2.78	19869	2384	16	0	33	52	0	logfile
✔	7XQJ	33398	2023-02-19	2022-05-07	4.0	4.56	3.73	4.2	0.007	0.84	0.0	0.05	15.98	0.01	2.401	6.40	6.01	6.5	93.5	0.0	-2.82	0.78	0.85	—	4.3	0.004	0.84	0.0	0.04	15.98	0.00	2.320	10.96	0.46	4.8	95.2	0.0	0.90	0.78	0.78	0.85	—	9960	1224	6	0	0	0	0	logfile
✔	7W3T	32293	2023-02-16	2021-11-26	3.59	2.49	3.54	2.2	0.003	0.60	0.0	0.05	13.93	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.004	0.69	0.0	0.05	15.63	0.01	2.215	13.43	0.62	6.9	93.1	0.0	-3.38	0.37	0.77	0.76	3.69	1455	176	3	0	7	0	0	logfile
✔	6R7Y	4747	2023-02-19	2019-03-29	4.2	4.23	4.05	4.2	0.010	1.07	0.0	0.06	13.58	0.01	2.188	3.88	1.71	2.6	97.3	0.2	-3.14	0.64	0.86	—	4.2	0.004	0.64	0.0	0.04	14.13	0.00	2.200	7.07	0.00	2.8	97.0	0.2	1.52	1.09	0.65	0.85	—	10062	1254	4	0	6	0	0	logfile
✔	7URA	26707	2023-02-17	2022-04-21	3.11	3.40	3.12	3.3	0.020	1.12	0.0	0.78	16.47	0.00	2.051	11.83	0.00	4.2	95.8	0.0	-2.18	0.59	0.85	3.83	3.3	0.002	1.08	0.0	0.12	16.33	0.00	2.219	5.44	0.36	3.4	96.6	0.0	1.10	0.41	0.57	0.85	2.59	5400	658	4	0	6	0	0	logfile
✔	7W3X	32295	2023-02-18	2021-11-26	3.21	2.33	3.15	2.2	0.003	0.63	0.0	0.05	14.35	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.2	0.003	0.66	0.0	0.05	16.41	0.00	2.139	11.90	0.25	8.0	92.0	0.0	-2.63	0.39	0.78	0.81	2.62	7429	893	7	0	31	0	0	logfile
✔	7QKi	14043	2023-02-18	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.004	0.63	0.0	0.05	11.95	0.00	2.085	5.52	0.00	5.0	95.0	0.0	-1.84	0.77	0.39	0.81	5.60	7074	456	6	0	0	0	3606	logfile
✔	5JLF	8163	2023-02-21	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.72	0.0	0.04	15.21	0.00	1.982	12.28	0.52	3.4	96.3	0.3	0.12	1.43	0.68	0.83	1.85	15800	1835	12	0	280	0	0	logfile

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