Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RYP	24744	2023-08-12	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.6	0.002	0.60	0.0	0.04	12.79	0.00	1.890	10.59	0.00	9.8	90.1	0.1	-0.44	1.01	0.77	0.71	—	11293	725	2	0	0	0	5599	logfile
✔	7DDQ	30656	2023-08-17	2020-10-29	2.84	3.56	—	3.1	0.012	1.92	0.0	0.06	20.42	0.00	1.706	13.94	0.00	4.7	95.3	0.0	1.05	0.77	0.77	4.39	3.2	0.004	1.18	0.0	0.04	20.83	0.00	1.893	13.72	2.05	4.3	95.7	0.0	1.73	1.36	0.79	0.89	3.56	22571	2354	64	0	62	0	0	logfile
✔	7T2E	25611	2023-08-09	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.49	0.0	0.04	16.21	0.00	2.222	2.35	1.18	0.3	99.7	0.0	0.45	0.13	0.36	0.86	4.79	2390	312	2	0	0	0	0	logfile
✔	8DZG	27797	2023-08-16	2022-08-07	3.1	3.44	3.21	3.5	0.008	0.73	0.0	0.04	16.80	0.00	2.076	2.92	0.29	4.8	95.0	0.2	-0.15	0.67	0.79	3.03	3.5	0.003	0.57	0.0	0.04	16.55	0.00	2.162	4.64	0.14	5.8	93.8	0.4	0.73	1.13	0.69	0.83	3.44	19758	2520	12	0	18	0	0	logfile
✔	8EPA	28523	2023-08-09	2022-10-05	3.4	4.08	3.33	3.8	0.004	0.69	0.0	0.05	14.00	0.00	2.184	14.18	0.18	9.3	90.4	0.3	-2.16	0.75	0.75	1.53	3.8	0.003	0.77	0.0	0.05	15.85	0.00	2.183	16.51	0.18	8.8	90.9	0.3	-2.03	0.37	0.76	0.76	0.92	5045	637	6	0	2	0	0	logfile
✔	7T57	25697	2023-08-12	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	13.54	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.003	0.72	0.0	0.04	15.90	0.00	1.971	11.42	0.32	3.2	96.8	0.0	0.99	0.87	0.73	0.80	1.00	11460	1464	6	0	4	0	0	logfile
✔	7NHo	12335	2023-08-16	2021-02-11	2.66	3.46	—	3.3	0.014	2.16	1.0	0.44	18.54	0.02	1.974	2.75	1.77	5.4	94.4	0.1	-2.33	0.58	0.79	3.76	3.3	0.003	0.69	0.0	0.04	17.60	0.00	1.828	9.91	2.84	3.0	97.0	0.0	1.15	1.70	0.62	0.84	3.32	19800	2086	26	0	62	0	0	logfile
✔	7V6Y	31753	2023-08-10	2021-08-20	3.5	3.75	—	3.8	0.014	1.83	9.0	0.13	15.71	0.01	2.258	12.19	11.06	5.3	94.5	0.2	0.59	0.59	0.74	1.29	3.8	0.003	0.68	0.0	0.04	16.00	0.00	2.159	8.65	0.99	5.1	94.9	0.0	0.92	1.24	0.62	0.76	1.86	7484	990	3	0	8	0	0	logfile
✔	6Z3T	11064	2023-08-09	2020-05-21	2.69	3.99	3.36	3.9	0.010	1.90	1.0	0.07	17.55	0.01	2.284	6.72	1.60	9.6	90.2	0.2	-5.84	0.21	0.59	1.55	3.9	0.005	1.17	0.0	0.04	18.69	0.01	2.149	16.73	2.14	8.6	91.4	0.0	-2.15	0.93	0.21	0.66	0.77	3608	441	4	0	21	0	0	logfile
✔	7T56	25696	2023-08-12	2021-12-11	3.7	4.23	3.77	4.1	0.004	0.68	0.0	0.05	13.02	0.00	1.719	9.32	0.72	3.3	96.6	0.1	0.18	0.72	0.76	1.54	4.1	0.003	0.71	0.0	0.04	16.55	0.00	1.988	10.91	0.40	3.0	97.0	0.0	0.97	1.34	0.73	0.81	1.47	11460	1464	6	0	4	0	0	logfile
✔	7SQS	25392	2023-08-09	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.004	0.57	0.0	0.04	14.95	0.00	2.243	4.28	0.00	4.6	95.4	0.0	0.93	0.32	0.77	0.86	2.75	4376	560	5	0	0	0	0	logfile
✔	8EQ4	28535	2023-08-10	2022-10-07	2.71	3.56	2.72	3.3	0.006	0.74	0.0	0.05	12.21	0.02	2.233	7.56	0.00	1.1	98.9	0.0	1.28	0.68	0.87	4.24	3.3	0.005	0.63	0.0	0.05	14.50	0.00	2.271	7.70	1.44	1.8	98.2	0.0	1.32	1.29	0.68	0.87	4.36	6903	849	6	0	15	0	0	logfile
✔	7N77	24222	2023-08-10	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	12.82	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.003	0.89	0.0	0.04	13.91	0.00	2.016	6.14	0.14	2.1	97.9	0.0	2.12	1.62	0.68	0.82	0.92	7470	1036	1	0	4	2	0	logfile
✔	6RLD	4919	2023-08-14	2019-05-02	2.9	3.28	2.83	3.2	0.009	1.38	0.0	0.06	17.57	0.01	2.306	5.79	0.47	4.6	95.4	0.0	-3.38	0.74	0.82	3.94	3.2	0.003	0.58	0.0	0.04	15.88	0.00	2.171	8.86	1.53	2.7	97.3	0.0	1.60	0.71	0.76	0.84	2.84	15309	1855	14	0	21	0	0	logfile
✔	8B01	15775	2023-08-09	2022-09-06	3.03	3.65	3.02	3.5	0.004	0.60	0.0	0.04	13.05	0.00	2.217	2.82	0.53	2.9	97.1	0.0	2.16	0.67	0.82	2.94	3.5	0.003	0.53	0.0	0.04	14.65	0.00	2.223	3.70	0.35	1.8	98.2	0.0	1.95	0.44	0.71	0.86	2.82	5478	684	5	0	15	0	0	logfile
✔	8DMK	27542	2023-08-10	2022-07-08	3.7	4.20	3.87	4.0	0.003	0.57	0.0	0.04	14.60	0.00	1.425	12.24	0.00	6.4	93.6	0.0	-1.18	0.76	0.66	1.02	4.0	0.003	0.61	0.0	0.04	16.05	0.00	2.086	15.88	0.25	6.3	93.7	0.0	-1.30	1.08	0.79	0.73	0.98	7348	917	6	0	6	0	0	logfile
✔	7UPi	26667	2023-08-10	2022-04-15	2.89	3.71	2.90	3.2	0.002	0.55	0.0	0.04	9.09	0.00	1.843	2.56	0.00	1.9	98.1	0.0	-0.12	0.91	0.87	3.97	3.2	0.002	0.56	0.0	0.04	10.89	0.00	2.006	4.22	0.11	2.1	97.9	0.0	-0.22	2.21	0.90	0.89	3.98	7775	972	5	0	5	0	0	logfile
✔	7TUY	26135	2023-08-10	2022-02-03	2.98	3.60	—	3.4	0.005	0.87	0.0	0.05	12.82	0.01	2.202	7.13	0.26	5.6	94.4	0.0	-3.71	0.68	0.81	3.08	3.4	0.019	0.75	0.0	0.04	15.45	0.01	2.177	10.74	2.72	5.5	94.5	0.0	-1.18	1.02	0.69	0.83	2.03	7157	928	4	0	1	0	0	logfile
✘	8FE1	29019	2023-08-14	2022-12-05	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15445	1772	10	0	48	0	0	logfile
✔	6TQM	10555	2023-08-24	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile

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