Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UJN	26567	2023-11-16	2022-03-31	2.89	2.89	2.89	2.9	0.015	1.45	0.0	0.05	15.36	0.00	2.175	9.00	0.00	3.3	96.7	0.0	0.57	0.64	0.76	3.10	2.9	0.002	0.58	0.0	0.04	17.38	0.01	2.170	6.21	1.27	3.5	96.5	0.0	-0.06	0.46	0.71	0.81	2.68	16272	1948	8	0	12	0	0	logfile
✔	7KA4	22758	2023-11-15	2020-09-29	2.8	2.81	—	2.8	0.005	0.89	0.0	0.05	14.06	0.01	2.372	4.23	3.96	3.2	96.8	0.0	-2.20	0.77	0.82	2.71	2.9	0.003	0.57	0.0	0.04	15.66	0.00	2.180	9.64	2.61	3.7	96.3	0.0	1.62	1.41	0.78	0.84	1.41	10472	1372	4	0	0	0	0	logfile
✔	6CRQ	7568	2023-11-17	2018-03-19	4.2	3.69	4.20	4.1	0.015	1.50	1.0	0.09	11.52	0.01	1.839	7.27	1.06	2.3	97.7	0.0	1.77	0.68	0.76	—	3.6	0.005	0.87	0.0	0.05	14.00	0.00	2.122	13.16	0.00	6.5	93.4	0.0	-0.58	1.43	0.68	0.78	—	20271	2391	54	0	105	0	0	logfile
✔	7VCT	31895	2023-11-21	2021-09-04	3.21	3.41	—	3.4	0.007	0.94	0.0	0.05	9.64	0.01	2.132	3.51	0.00	4.4	95.6	0.0	-3.08	0.77	0.82	2.62	3.3	0.004	0.61	0.0	0.04	13.35	0.00	1.973	6.65	0.08	4.4	95.6	0.0	0.51	1.31	0.77	0.85	1.90	35694	4506	12	0	18	0	0	logfile
✔	6T72	10389	2023-11-19	2019-10-21	3.7	3.79	—	3.8	0.008	1.55	0.0	0.11	14.78	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.55	0.0	0.03	15.25	0.00	2.116	3.29	0.38	2.0	98.0	0.0	1.85	1.24	0.78	0.87	1.54	26278	3388	42	0	210	0	0	logfile
✔	6Vo0	21256	2023-11-17	2020-01-29	3.52	3.99	—	3.9	0.022	1.80	0.0	0.10	10.05	0.01	2.380	1.66	0.00	3.6	95.6	0.8	0.22	0.77	0.83	2.86	3.9	0.003	0.75	0.0	0.04	15.01	0.00	2.147	10.95	0.58	5.9	93.4	0.7	-0.72	1.97	0.75	0.81	1.96	19494	2364	36	0	72	0	0	logfile
✔	7oVB	13083	2023-11-15	2021-06-14	3.61	4.01	—	3.9	0.013	1.13	0.0	0.06	15.02	0.01	1.960	22.05	0.09	11.6	88.4	0.0	-4.16	0.79	0.81	2.01	3.9	0.003	0.62	0.0	0.04	16.26	0.00	2.155	10.72	0.27	3.2	96.8	0.0	-0.68	0.53	0.78	0.78	1.09	10854	1405	6	0	1	0	0	logfile
✔	7AGG	11779	2023-11-14	2020-09-22	3.3	3.68	—	3.6	0.007	0.79	0.0	0.05	13.16	0.01	1.980	6.95	0.00	4.2	95.8	0.0	-1.18	0.83	0.80	3.30	3.6	0.005	0.72	0.0	0.05	14.99	0.00	2.074	14.39	0.32	5.5	94.5	0.0	-0.89	2.99	0.82	0.85	3.53	8252	1056	5	0	0	0	0	logfile
✔	6S7P	10111	2023-11-14	2019-07-05	3.2	3.38	—	3.4	0.009	1.13	0.0	0.08	10.36	0.01	2.085	3.44	0.33	2.8	97.2	0.0	-3.03	0.65	0.83	4.30	3.4	0.003	0.54	0.0	0.04	14.25	0.00	1.994	5.67	0.11	2.0	98.0	0.0	1.00	0.55	0.66	0.85	2.59	9028	1128	1	0	11	0	0	logfile
✔	6DRJ	7999	2023-11-21	2018-06-12	3.3	3.80	—	3.7	0.007	1.13	8.0	0.07	10.90	0.01	2.093	5.57	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.002	0.59	0.0	0.04	14.03	0.00	2.183	4.74	0.39	2.7	97.3	0.0	0.35	1.22	0.68	0.82	1.64	35516	5064	8	0	8	0	0	logfile
✘	6VXK	21442	2023-11-17	2020-02-22	3.1	3.57	—	3.2	0.011	0.84	0.0	0.05	14.73	0.00	2.122	15.37	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✔	7TYW	26196	2023-11-15	2022-02-14	3.0	2.92	2.97	3.1	0.011	0.68	1.0	0.04	13.10	0.00	2.199	5.38	1.41	1.9	98.1	0.0	-4.19	0.58	0.75	2.71	3.1	0.003	0.59	0.0	0.04	16.01	0.00	2.201	8.46	3.12	2.5	97.5	0.0	-0.04	0.58	0.59	0.79	2.54	9779	1256	10	0	7	1	0	logfile
✔	8HBV	34644	2023-11-13	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	14.34	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.52	0.0	0.04	16.74	0.00	2.228	6.11	0.59	2.0	98.0	0.0	2.56	1.72	0.59	0.89	3.85	3279	414	3	0	3	0	0	logfile
✔	6PXV	20522	2023-11-17	2019-07-27	3.2	3.81	—	3.3	0.010	1.39	8.0	0.09	10.11	0.01	2.127	8.05	0.36	9.3	89.1	1.6	-3.83	0.77	0.74	2.45	3.3	0.003	0.70	0.0	0.04	13.02	0.00	2.162	8.84	0.06	8.8	90.9	0.3	-1.51	1.79	0.81	0.82	2.16	14774	1830	6	0	0	0	0	logfile
✔	7SL3	25190	2023-11-17	2021-10-22	3.4	3.65	—	3.5	0.002	0.54	0.0	0.04	13.25	0.00	2.238	8.44	0.32	6.4	93.4	0.2	-0.71	0.80	0.81	2.46	3.5	0.004	0.57	0.0	0.04	14.42	0.00	2.193	9.89	0.13	6.4	93.6	0.0	-0.80	1.14	0.81	0.84	2.59	14016	1736	6	0	0	0	0	logfile
✔	7CA3	30323	2023-11-17	2020-06-08	4.5	4.65	—	4.5	0.017	1.30	4.0	0.17	15.80	0.01	1.348	20.50	1.01	15.2	84.2	0.6	-4.98	0.62	0.69	—	4.5	0.003	0.78	2.0	0.10	14.13	0.00	1.902	16.31	0.00	8.2	91.7	0.1	-2.12	1.16	0.65	0.80	—	19862	1350	4	0	4	0	9307	logfile
✔	7VCV	31897	2023-11-22	2021-09-04	3.21	3.32	—	3.2	0.012	1.08	0.0	0.06	9.72	0.01	2.097	3.88	0.00	6.2	93.8	0.0	-3.61	0.75	0.81	2.50	3.3	0.003	0.54	0.0	0.04	14.12	0.00	2.069	5.45	0.08	4.9	95.1	0.0	0.13	1.25	0.73	0.82	1.69	36036	4548	12	0	24	0	0	logfile
✔	7EPD	31238	2023-11-17	2021-04-26	3.9	2.74	—	3.5	0.002	0.45	0.0	0.04	12.27	0.00	2.232	7.06	0.00	4.0	96.0	0.0	-2.46	0.69	0.63	0.57	3.5	0.004	0.64	0.0	0.04	14.15	0.00	2.224	13.87	0.45	5.3	94.7	0.0	0.04	1.20	0.75	0.74	1.44	10710	1569	2	0	0	0	0	logfile
✔	8DTM	27705	2023-11-15	2022-07-26	3.5	3.58	3.45	3.6	0.003	0.56	0.0	0.04	16.33	0.00	2.132	7.74	0.41	5.8	94.2	0.0	-0.79	0.71	0.80	2.96	3.6	0.002	0.52	0.0	0.04	16.81	0.00	2.129	7.19	0.55	5.4	94.6	0.0	-0.64	0.25	0.71	0.81	2.59	6498	802	3	0	0	0	0	logfile
✔	7NH9	12321	2023-11-15	2021-02-10	3.03	3.58	—	3.4	0.007	0.80	0.0	0.04	14.80	0.00	2.236	12.71	3.31	11.7	88.3	0.0	-2.35	0.75	0.84	2.46	3.4	0.003	0.66	0.0	0.04	16.04	0.00	2.252	11.90	0.07	9.2	90.8	0.0	0.93	0.52	0.76	0.86	2.43	13120	1635	5	0	0	0	0	logfile

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