Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J0F	9763	2023-02-23	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	4.99	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.003	0.74	0.0	0.04	16.95	0.00	2.155	10.44	0.55	5.9	94.1	0.0	-1.05	1.71	0.64	0.85	2.00	19314	2472	12	0	0	0	0	logfile
✔	7R19	14235	2023-02-25	2022-02-02	3.3	3.69	3.53	3.6	0.003	0.56	0.0	0.04	11.35	0.01	2.179	4.01	0.18	2.1	97.9	0.0	0.42	0.82	0.83	2.64	3.6	0.003	0.57	0.0	0.04	13.63	0.00	2.240	5.53	0.14	3.3	96.7	0.0	0.04	0.52	0.85	0.86	2.46	25388	3178	10	0	38	0	0	logfile
✘	7D44	30569	2023-02-26	2020-09-22	4.0	4.14	—	4.0	0.006	0.86	0.0	0.05	14.78	0.00	2.049	20.50	0.28	16.3	83.6	0.1	-5.25	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28391	3825	12	0	0	0	0	logfile
✔	6PLZ	20381	2023-02-21	2019-07-01	3.0	3.68	—	3.5	0.006	0.94	0.0	0.06	9.68	0.01	2.338	4.40	0.00	5.3	94.7	0.0	-5.25	0.60	0.85	4.29	3.5	0.003	0.64	0.0	0.05	15.71	0.00	2.123	9.40	2.65	3.0	97.0	0.0	-0.63	1.07	0.54	0.83	3.25	14210	1725	15	0	20	0	0	logfile
✔	6DVW	8919	2023-02-23	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.004	0.80	0.0	0.04	13.27	0.00	2.102	12.09	0.00	14.6	85.1	0.3	-1.90	0.87	0.67	0.80	—	21004	2576	4	0	0	0	0	logfile
✔	7DR6	30824	2023-02-23	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.90	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	7R17	14233	2023-02-24	2022-02-02	3.7	4.04	3.84	3.9	0.003	0.50	0.0	0.04	12.77	0.01	2.221	5.15	0.50	3.1	96.9	0.0	0.37	0.83	0.83	2.01	3.9	0.002	0.51	0.0	0.04	14.34	0.00	2.136	7.04	0.12	3.1	96.9	0.0	0.63	0.42	0.82	0.82	1.45	23626	2981	7	0	22	0	0	logfile
✔	6XFA	22168	2023-02-28	2020-06-15	3.6	3.70	—	3.6	0.006	0.66	0.0	0.05	14.34	0.00	2.205	5.84	0.57	8.0	92.0	0.0	-3.71	0.81	0.85	2.34	3.7	0.004	0.67	0.0	0.04	15.69	0.00	2.248	6.06	0.26	6.3	93.7	0.0	0.03	1.23	0.79	0.86	1.86	31730	4060	20	0	20	0	0	logfile
✔	7TMQ	25999	2023-02-28	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile
✔	6DV3	8914	2023-02-22	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.003	0.72	0.0	0.05	12.62	0.00	2.023	10.79	0.02	3.7	96.3	0.0	-1.65	0.84	0.63	0.82	—	57975	7500	15	0	0	0	0	logfile
✔	7F8V	31493	2023-02-17	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.08	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.63	0.0	0.04	16.03	0.00	2.150	13.09	0.28	4.1	95.9	0.0	-0.72	1.12	0.53	0.68	1.26	6601	848	5	0	0	0	0	logfile
✔	7E0F	30931	2023-02-16	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	7KGi	22871	2023-02-24	2020-10-16	3.34	3.13	—	3.2	0.005	0.81	2.0	0.05	14.36	0.01	2.021	7.63	0.82	1.9	98.1	0.0	1.36	0.64	0.77	2.19	3.1	0.005	0.66	0.0	0.04	16.28	0.00	2.165	9.66	0.47	2.1	97.9	0.0	1.17	0.44	0.67	0.82	2.04	23533	3060	6	0	6	0	0	logfile
✔	7R8C	24315	2023-02-18	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	6N38	9341	2023-02-25	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.17	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.002	0.65	0.0	0.04	14.39	0.00	2.192	6.42	0.16	2.2	97.8	0.0	0.89	0.83	0.81	0.83	2.23	24456	3098	11	0	39	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	7WBL	32405	2023-02-20	2021-12-17	3.4	3.46	—	3.5	0.004	0.58	0.0	0.04	15.30	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.54	0.0	0.04	16.74	0.00	2.193	6.00	0.00	2.9	97.0	0.1	1.12	0.32	0.67	0.79	1.43	6484	791	3	0	5	0	0	logfile
✔	6ZGF	11204	2023-02-25	2020-06-18	3.1	3.27	3.13	3.2	0.007	0.84	0.0	0.07	13.24	0.02	2.112	5.22	0.76	6.5	93.5	0.0	-2.49	0.80	0.85	3.88	3.2	0.003	0.58	0.0	0.04	14.58	0.00	2.217	4.64	0.18	5.7	94.3	0.0	-1.33	0.37	0.79	0.87	3.41	26163	3180	36	0	93	0	0	logfile
✔	6NUW	0523	2023-02-22	2019-02-03	4.25	4.40	—	4.2	0.012	1.45	1.0	0.07	14.25	0.01	1.219	13.65	6.01	15.2	84.0	0.8	-4.70	0.79	0.78	—	4.2	0.004	0.89	0.0	0.05	13.33	0.01	2.176	17.27	0.08	12.7	87.2	0.1	-0.99	0.81	0.78	0.76	—	16292	2099	13	0	261	0	0	logfile
✔	7DGE	30672	2023-02-21	2020-11-11	3.65	3.17	—	3.0	0.013	1.99	7.0	0.12	14.91	0.02	2.503	10.70	2.25	12.2	87.0	0.8	-4.67	0.78	0.71	1.76	3.0	0.003	0.73	0.0	0.04	16.48	0.00	2.101	16.62	0.58	6.5	93.5	0.0	-1.54	0.69	0.78	0.71	0.92	14249	1814	5	0	1	0	0	logfile

• Page 1 of 353
• next →