Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YS8	10893	2022-04-04	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.40	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7D0i	30535	2022-04-06	2020-09-10	3.0	2.89	2.95	3.1	0.008	0.78	0.0	0.05	14.12	0.00	2.237	5.55	2.60	2.6	97.4	0.0	-2.14	0.69	0.81	2.98	3.1	0.011	1.05	2.0	0.04	16.56	0.00	1.747	8.00	2.21	0.9	99.1	0.0	1.61	1.40	0.69	0.83	2.70	22164	2544	12	0	12	0	0	logfile
✔	6Z80	11113	2022-04-09	2020-06-02	3.0	3.21	—	3.2	0.016	1.22	0.0	0.07	9.98	0.01	2.030	3.48	0.00	3.4	96.2	0.4	-3.67	0.70	0.73	3.14	3.2	0.002	0.63	0.0	0.05	16.08	0.00	2.129	6.69	2.26	3.4	96.6	0.0	-0.22	2.53	0.66	0.76	1.98	21460	2660	40	0	20	0	0	logfile
✘	7CWS	30486	2022-04-08	2020-08-31	3.4	3.74	—	3.3	0.008	1.12	10.0	0.07	10.02	0.01	1.462	32.36	0.20	6.8	93.0	0.2	-3.39	0.70	0.56	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36389	4602	33	0	46	0	0	logfile
✔	7KDP	22828	2022-04-05	2020-10-09	3.6	3.84	—	3.8	0.007	0.93	0.0	0.05	14.04	0.00	2.184	11.87	0.12	13.8	86.2	0.0	-2.89	0.71	0.81	2.28	3.8	0.003	0.71	0.0	0.05	15.76	0.01	2.211	8.72	0.30	13.1	86.9	0.0	-2.18	2.00	0.70	0.81	1.90	15844	1914	6	0	34	0	0	logfile
✔	7K7K	22701	2022-04-08	2020-09-23	3.56	3.71	—	3.7	0.009	0.92	0.0	0.05	15.87	0.01	1.827	16.18	1.39	7.7	92.3	0.0	-6.33	0.54	0.86	1.36	3.7	0.003	0.78	0.0	0.04	18.95	0.00	2.125	10.78	0.94	6.7	93.3	0.0	0.98	2.60	0.53	0.84	1.15	36204	4788	28	0	0	0	0	logfile
✔	6LYG	30016	2022-04-05	2020-02-14	3.1	3.32	—	3.3	0.003	0.57	0.0	0.04	14.35	0.00	2.299	7.74	0.00	1.7	98.3	0.0	-0.02	0.54	0.76	2.03	3.3	0.005	0.62	0.0	0.04	16.20	0.01	2.232	5.16	0.00	1.3	98.7	0.0	3.20	0.78	0.65	0.86	1.86	14688	1856	16	0	8	0	0	logfile
✔	7Ao8	11837	2022-04-05	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.80	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.007	0.99	0.0	0.05	14.47	0.01	1.784	42.20	0.00	8.3	91.7	0.0	-2.14	2.68	0.85	0.75	—	10905	1350	9	0	8	0	0	logfile
✔	7AHo	11789	2022-04-05	2020-09-25	4.18	3.69	—	3.9	0.006	0.92	0.0	0.06	15.60	0.01	2.254	6.95	0.21	4.6	95.4	0.0	-5.45	0.72	0.77	—	3.9	0.008	0.97	0.0	0.05	15.25	0.01	1.968	15.51	0.07	4.5	95.5	0.0	-2.21	0.77	0.72	0.77	—	13521	1748	9	0	3	0	0	logfile
✔	7CZB	30508	2022-04-04	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.56	0.80	1.78	6304	776	4	0	0	0	0	logfile
✘	6ZY2	11547	2022-04-05	2020-07-30	3.6	3.75	—	3.7	0.003	0.66	0.0	0.04	11.67	0.00	2.308	2.92	0.18	3.9	96.1	0.0	-5.61	0.67	0.75	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15718	2091	12	0	0	0	0	logfile
✔	6XE9	22145	2022-04-06	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.22	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.005	0.67	0.0	0.04	14.61	0.00	2.020	29.35	0.10	6.6	93.4	0.0	0.49	1.45	0.92	0.83	—	22081	2949	6	0	0	0	0	logfile
✔	7JZH	22531	2022-04-06	2020-09-02	3.59	3.46	—	3.5	0.006	0.96	4.0	0.06	20.55	0.01	2.095	16.68	16.34	8.7	91.3	0.0	-3.42	0.56	0.73	1.23	3.6	0.009	1.07	0.0	0.04	19.38	0.01	1.637	11.54	0.14	4.4	95.6	0.0	-0.30	1.63	0.59	0.73	1.10	20328	2562	6	0	0	0	0	logfile
✔	7JZ3	22529	2022-04-04	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.50	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.47	0.65	1.40	8142	1038	3	0	0	0	0	logfile
✔	7BBH	12130	2022-04-07	2020-12-17	2.9	3.12	3.00	3.1	0.005	0.71	0.0	0.05	12.20	0.01	2.270	3.20	0.86	3.9	96.1	0.0	-0.97	0.78	0.83	3.43	3.1	0.003	0.60	0.0	0.04	15.37	0.00	2.164	3.55	1.69	3.5	96.5	0.0	-0.08	4.35	0.78	0.84	3.00	25827	3189	18	0	69	0	0	logfile
✔	6WVT	21925	2022-04-07	2020-05-06	3.56	3.74	—	3.7	0.007	0.96	0.0	0.05	17.66	0.01	2.106	6.53	5.29	3.8	96.2	0.0	-3.51	0.73	0.83	2.25	3.7	0.003	0.68	0.0	0.04	17.47	0.00	1.997	10.73	0.73	3.4	96.6	0.0	0.02	1.14	0.73	0.84	2.02	25248	3240	18	0	12	0	0	logfile
✔	6RBG	4798	2022-04-06	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.63	0.0	0.04	17.29	0.00	2.160	4.94	1.24	1.3	98.7	0.0	0.69	0.57	0.70	0.83	2.57	19336	2464	8	0	0	0	0	logfile
✔	6PM6	20389	2022-04-05	2019-07-01	2.9	3.37	—	3.4	0.004	0.89	0.0	0.05	10.24	0.01	2.335	5.13	0.00	4.9	95.1	0.0	-4.86	0.54	0.80	4.25	3.4	0.004	0.77	0.0	0.05	15.86	0.01	2.195	9.54	2.57	5.3	94.7	0.1	-0.86	0.74	0.52	0.80	3.69	14100	1735	15	0	15	0	0	logfile
✔	6ZY9	11555	2022-04-05	2020-07-30	3.3	3.42	—	3.5	0.004	0.81	0.0	0.05	12.79	0.01	2.174	2.45	0.25	4.7	95.3	0.0	-5.76	0.62	0.71	1.14	3.4	0.006	0.88	0.0	0.04	15.32	0.01	2.039	6.81	0.13	4.3	95.7	0.0	-1.34	0.68	0.65	0.80	1.00	14973	1985	14	0	4	0	0	logfile
✘	7KJ2	22891	2022-04-07	2020-10-25	3.6	3.68	—	3.6	0.013	1.80	11.0	0.14	13.76	0.01	1.596	6.79	1.69	6.4	93.1	0.5	-2.22	0.69	0.71	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28560	3502	25	0	70	0	0	logfile

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