Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W4o	21535	2021-10-06	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.61	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.003	0.75	0.0	0.05	12.68	0.00	2.094	20.73	0.00	2.5	97.4	0.1	0.69	1.48	0.89	0.83	—	14475	1789	13	0	0	0	0	logfile
✔	7BVC	30216	2021-10-04	2020-04-10	2.9	3.37	2.95	3.3	0.008	1.18	2.0	0.15	13.79	0.01	2.134	5.86	0.17	8.2	91.6	0.1	-4.30	0.68	0.85	3.17	3.3	0.010	1.20	2.0	0.04	15.35	0.01	2.150	5.72	1.14	6.8	93.1	0.0	-1.55	0.98	0.72	0.87	2.94	17206	2231	5	0	8	0	0	logfile
✔	6KMF	0724	2021-10-03	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.004	0.71	0.0	0.04	16.26	0.01	2.170	10.03	0.62	9.1	90.9	0.0	-2.94	0.50	0.53	0.80	2.58	7704	1011	4	0	0	0	0	logfile
✔	6XF6	22162	2021-10-05	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.69	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.003	0.57	0.0	0.04	12.84	0.00	2.180	10.37	0.09	2.8	97.2	0.0	0.55	2.24	0.87	0.84	—	22938	2928	18	0	59	0	0	logfile
✔	7JMG	22393	2021-10-05	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.33	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	4.6	0.002	0.68	0.0	0.04	11.03	0.00	2.046	11.07	0.00	8.1	91.9	0.0	-1.52	0.87	0.77	0.58	—	120756	13500	12	0	3608	0	0	logfile
✔	6Z43	11068	2021-10-05	2020-05-22	3.3	3.43	—	3.4	0.005	0.56	0.0	0.05	10.79	0.00	2.094	4.17	0.68	3.5	96.5	0.0	-0.78	0.78	0.84	3.41	3.4	0.005	0.73	0.0	0.04	13.48	0.00	2.110	8.22	0.04	2.9	97.1	0.0	0.58	1.34	0.80	0.88	2.57	26725	3351	29	0	66	0	0	logfile
✔	6YJ5	10816	2021-10-03	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.75	0.0	0.05	15.53	0.01	2.236	8.98	0.61	10.2	89.8	0.0	-2.25	0.85	0.51	0.73	2.85	2061	306	1	0	0	0	0	logfile
✔	6YJ4	10815	2021-10-04	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.66	14.62	0.01	2.031	2.86	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.6	0.006	1.05	0.0	0.18	16.78	0.00	1.378	7.04	1.42	3.2	96.8	0.0	0.92	0.59	0.63	0.84	3.64	66311	8126	94	0	50	275	0	logfile
✔	7JJJ	22354	2021-10-03	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.78	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.003	0.66	0.0	0.05	12.11	0.00	2.158	11.37	0.00	4.4	95.6	0.0	0.04	1.48	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	6KNG	0731	2021-10-03	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✘	6Z9F	11122	2021-10-06	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.75	48.0	0.10	15.49	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41020	4152	72	0	32	4172	0	logfile
✔	6WoT	21860	2021-10-20	2020-04-25	3.54	3.93	3.56	3.8	0.007	1.04	7.0	0.05	15.51	0.01	2.076	6.58	0.01	13.6	86.3	0.1	-4.28	0.75	0.69	0.93	3.7	0.003	0.66	3.0	0.04	15.97	0.00	1.932	12.27	0.22	12.0	87.9	0.1	-1.43	0.84	0.77	0.75	1.01	248264	17216	12	0	4	0	120188	logfile
✔	7K10	22619	2021-10-03	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.003	0.68	0.0	0.04	16.60	0.00	2.134	6.74	0.09	9.0	90.9	0.1	-1.43	0.44	0.72	0.77	1.56	10037	1259	1	0	0	0	0	logfile
✘	6WoU	21861	2021-10-19	2020-04-25	3.27	3.59	3.48	3.5	0.008	0.96	6.0	0.05	18.03	0.01	2.069	3.64	1.64	13.3	86.5	0.2	-4.35	0.65	0.72	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245683	16112	12	0	4	0	120439	logfile
✔	6XRA	22293	2021-10-03	2020-07-11	3.0	3.29	—	3.3	0.012	1.88	18.0	0.11	16.52	0.01	2.189	4.66	2.61	5.6	94.4	0.0	-2.60	0.69	0.72	2.23	3.3	0.004	0.70	0.0	0.05	18.22	0.00	2.197	10.01	4.78	4.8	95.2	0.0	0.17	1.06	0.71	0.75	1.55	8808	1044	21	0	57	0	0	logfile
✔	6XR8	22292	2021-10-05	2020-07-11	2.9	2.96	—	3.0	0.004	0.60	1.0	0.06	13.73	0.00	2.089	3.79	0.73	2.5	97.4	0.1	-1.26	0.70	0.81	3.60	2.9	0.003	0.62	1.0	0.05	16.72	0.00	2.153	7.47	2.56	3.5	96.5	0.0	0.09	1.59	0.70	0.86	3.20	27624	3321	42	0	123	0	0	logfile
✔	6M3X	30073	2021-10-04	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.89	7.35	2.3	0.006	0.74	0.0	0.05	17.16	0.01	2.314	6.11	1.79	3.6	96.4	0.0	0.01	0.42	0.78	0.91	6.76	62387	7440	72	0	24	2243	0	logfile
✔	6PV6	20486	2021-10-05	2019-07-19	4.5	5.79	—	3.8	0.006	1.04	0.0	0.05	10.65	0.01	1.373	9.42	0.31	11.0	88.9	0.1	-4.72	0.60	0.40	—	4.6	0.003	0.70	0.0	0.04	11.42	0.00	2.084	12.08	0.00	8.8	91.2	0.1	-1.94	1.53	0.78	0.62	—	120756	13500	12	0	3608	0	0	logfile
✔	6VWH	21416	2021-10-03	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.75	0.01	2.223	10.05	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.67	0.0	0.04	12.84	0.00	1.941	10.76	0.00	9.8	90.1	0.2	-2.27	1.64	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	6PWA	20502	2021-10-21	2019-07-22	3.3	3.75	3.32	3.7	0.010	0.82	0.0	0.05	12.81	0.01	2.276	2.96	3.91	4.3	95.7	0.0	-3.13	0.73	0.90	4.68	3.7	0.003	0.54	0.0	0.04	14.39	0.00	2.113	4.30	0.13	2.3	97.7	0.0	-0.73	0.45	0.67	0.89	3.91	248160	31140	60	0	0	0	0	logfile

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