The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5LJV | 4062 | 2022-12-13 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.58 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | 3.7 | 0.004 | 0.80 | 0.0 | 0.05 | 16.51 | 0.01 | 1.932 | 12.91 | 0.44 | 3.3 | 96.7 | 0.0 | -0.24 | 2.49 | 0.72 | 0.81 | 1.95 | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-12-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 67.37 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.103 | 29.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 6UM1 | 20815 | 2022-12-13 | 2019-10-08 | 3.46 | 3.57 | — | 3.5 | 0.014 | 1.83 | 7.0 | 0.09 | 15.16 | 0.01 | 2.014 | 9.77 | 0.84 | 6.9 | 92.9 | 0.2 | -4.82 | 0.69 | 0.70 | 2.32 | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 16.30 | 0.00 | 2.179 | 15.75 | 0.26 | 10.5 | 89.4 | 0.1 | -3.03 | 0.60 | 0.72 | 0.76 | 2.06 | 17134 | 2208 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 5FTL | 3297 | 2022-12-19 | 2016-01-14 | 3.3 | 2.96 | — | 2.9 | 0.010 | 1.12 | 0.0 | 0.06 | 10.70 | 0.01 | 2.214 | 17.11 | 0.00 | 6.1 | 93.2 | 0.7 | -4.22 | 0.69 | 0.81 | 2.28 | 2.9 | 0.004 | 0.76 | 0.0 | 0.05 | 16.13 | 0.01 | 2.087 | 10.65 | 0.27 | 5.4 | 94.4 | 0.1 | -0.55 | 2.20 | 0.70 | 0.80 | 1.51 | 34278 | 4338 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6ACJ | 9593 | 2022-12-16 | 2018-07-26 | 4.2 | 4.37 | — | 4.2 | 0.010 | 1.33 | 2.0 | 0.07 | 11.28 | 0.01 | 1.731 | 12.06 | 0.61 | 16.8 | 82.7 | 0.6 | -4.76 | 0.74 | 0.71 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 12.40 | 0.01 | 2.091 | 20.18 | 0.00 | 14.5 | 85.3 | 0.2 | -2.68 | 1.55 | 0.75 | 0.72 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXR | 9895 | 2022-12-12 | 2019-04-24 | 3.7 | 3.95 | — | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 10.83 | 0.01 | 2.273 | 5.94 | 0.74 | 7.2 | 92.6 | 0.2 | -3.45 | 0.69 | 0.78 | 2.74 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.79 | 0.00 | 2.119 | 11.45 | 0.43 | 6.5 | 93.4 | 0.1 | -0.30 | 1.72 | 0.66 | 0.79 | 2.12 | 8437 | 1073 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CFW | 7468 | 2022-12-14 | 2018-02-17 | 3.7 | 3.82 | — | 3.8 | 0.010 | 1.27 | 1.0 | 0.07 | 12.05 | 0.01 | 1.968 | 5.45 | 1.60 | 10.7 | 89.0 | 0.4 | -4.93 | 0.70 | 0.86 | 3.46 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 15.19 | 0.01 | 2.087 | 8.69 | 0.58 | 8.7 | 91.2 | 0.2 | -1.28 | 1.29 | 0.71 | 0.86 | 2.17 | 19589 | 2530 | 17 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Q2o | 20576 | 2022-12-13 | 2019-08-08 | 3.65 | 3.77 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.05 | 8.38 | 0.01 | 1.534 | 3.25 | 0.12 | 5.6 | 94.4 | 0.0 | -3.75 | 0.48 | 0.23 | 0.05 | 3.6 | 0.005 | 0.89 | 0.0 | 0.05 | 14.72 | 0.01 | 2.099 | 18.48 | 1.20 | 7.7 | 92.3 | 0.0 | -1.96 | 2.05 | 0.68 | 0.65 | 0.76 | 15196 | 1900 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6VV5 | 21391 | 2022-12-15 | 2020-02-17 | 3.5 | 3.62 | 3.61 | 3.6 | 0.017 | 1.66 | 0.0 | 0.09 | 11.16 | 0.03 | 2.262 | 5.10 | 1.26 | 1.6 | 98.3 | 0.1 | 0.87 | 0.74 | 0.84 | 3.28 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.37 | 0.00 | 2.210 | 6.39 | 0.14 | 3.5 | 96.5 | 0.0 | 0.14 | 1.36 | 0.75 | 0.84 | 2.68 | 26838 | 3291 | 36 | 0 | 102 | 0 | 0 | logfile |
✔ | 6QG2 | 4545 | 2022-12-20 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.72 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.115 | 17.30 | 0.00 | 10.4 | 88.9 | 0.7 | -1.95 | 1.68 | 0.70 | 0.58 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PUS | 20480 | 2022-12-19 | 2019-07-18 | 3.7 | 4.57 | — | 3.8 | 0.009 | 1.11 | 0.0 | 0.06 | 14.56 | 0.01 | 2.208 | 9.19 | 1.64 | 7.9 | 91.6 | 0.5 | -3.61 | 0.75 | 0.84 | 1.56 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 14.62 | 0.00 | 2.182 | 10.19 | 0.28 | 6.9 | 93.0 | 0.1 | -0.09 | 0.38 | 0.75 | 0.84 | 1.63 | 37380 | 5224 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6M18 | 30040 | 2022-12-14 | 2020-02-25 | 2.9 | 3.12 | — | 3.0 | 0.007 | 1.02 | 2.0 | 0.07 | 15.19 | 0.01 | 2.060 | 10.56 | 3.28 | 7.7 | 91.2 | 1.1 | -5.88 | 0.68 | 0.73 | 3.22 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 15.88 | 0.00 | 2.013 | 6.66 | 1.68 | 6.5 | 93.4 | 0.1 | -0.16 | 1.26 | 0.76 | 0.88 | 2.57 | 22534 | 2708 | 26 | 0 | 44 | 30 | 0 | logfile |
✔ | 6PUR | 20479 | 2022-12-19 | 2019-07-18 | 4.4 | 5.34 | — | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 14.69 | 0.01 | 2.255 | 9.98 | 1.66 | 7.9 | 91.6 | 0.5 | -3.61 | 0.74 | 0.81 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 13.33 | 0.00 | 2.124 | 14.61 | 0.00 | 7.8 | 92.1 | 0.1 | 0.13 | 0.56 | 0.75 | 0.84 | — | 37268 | 5224 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6SP2 | 10279 | 2022-12-14 | 2019-08-30 | 3.33 | 3.92 | 3.50 | 3.8 | 0.006 | 0.85 | 0.0 | 0.05 | 15.17 | 0.00 | 1.590 | 8.11 | 0.00 | 4.7 | 95.3 | 0.0 | -0.56 | 0.49 | 0.67 | 2.32 | 3.8 | 0.003 | 0.66 | 0.0 | 0.04 | 14.85 | 0.00 | 2.207 | 5.66 | 0.21 | 3.8 | 96.2 | 0.0 | 2.75 | 1.49 | 0.63 | 0.80 | 1.58 | 18498 | 2190 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6E7B | 8997 | 2022-12-11 | 2018-07-25 | 3.5 | 3.67 | 3.28 | 3.7 | 0.006 | 0.83 | 0.0 | 0.04 | 11.47 | 0.00 | 2.009 | 5.71 | 0.14 | 6.5 | 93.5 | 0.0 | -4.13 | 0.56 | 0.76 | 2.80 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 15.64 | 0.00 | 1.928 | 15.99 | 0.27 | 4.2 | 95.8 | 0.0 | -1.25 | 0.95 | 0.58 | 0.80 | 2.52 | 6774 | 854 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6DLU | 7957 | 2022-12-12 | 2018-06-02 | 3.75 | 3.84 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 9.95 | 0.00 | 1.944 | 12.65 | 0.23 | 5.7 | 94.3 | 0.0 | -2.78 | 0.31 | 0.77 | 1.09 | 3.7 | 0.003 | 0.70 | 0.0 | 0.04 | 13.91 | 0.00 | 1.941 | 9.28 | 0.23 | 5.3 | 94.7 | 0.0 | 0.08 | 2.20 | 0.32 | 0.82 | 1.35 | 11991 | 1481 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-12-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.05 | 14.62 | 0.01 | 2.174 | 15.69 | 0.00 | 4.8 | 94.6 | 0.6 | 0.77 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E7C | 8998 | 2022-12-11 | 2018-07-25 | 3.65 | 3.83 | 3.42 | 3.8 | 0.007 | 0.85 | 0.0 | 0.04 | 12.40 | 0.00 | 1.901 | 7.88 | 0.00 | 6.8 | 93.2 | 0.0 | -4.32 | 0.50 | 0.75 | 3.05 | 3.8 | 0.005 | 0.78 | 0.0 | 0.05 | 15.93 | 0.00 | 1.916 | 20.19 | 0.68 | 5.3 | 94.7 | 0.0 | -2.25 | 0.94 | 0.51 | 0.78 | 2.78 | 6780 | 854 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6E7P | 9000 | 2022-12-13 | 2018-07-27 | 3.5 | 3.61 | — | 3.7 | 0.009 | 1.06 | 0.0 | 0.48 | 12.75 | 0.01 | 2.289 | 3.60 | 0.24 | 8.0 | 91.8 | 0.2 | -5.15 | 0.62 | 0.81 | 4.17 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 13.68 | 0.00 | 2.228 | 6.20 | 0.18 | 5.4 | 94.6 | 0.0 | -0.68 | 0.66 | 0.62 | 0.80 | 2.95 | 15508 | 1900 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2022-12-16 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.70 | 0.00 | 2.076 | 21.09 | 0.71 | 5.1 | 94.9 | 0.0 | -0.72 | 1.39 | 0.75 | 0.78 | 0.89 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |