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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YS8 | 10893 | 2022-04-04 | 2020-04-21 | 3.9 | 4.00 | 3.55 | 3.9 | 0.006 | 1.03 | 1.0 | 0.08 | 15.75 | 0.02 | 1.522 | 10.61 | 1.70 | 6.4 | 91.4 | 2.2 | -3.81 | 0.65 | 0.83 | 1.77 | 3.9 | 0.005 | 0.93 | 0.0 | 0.05 | 17.11 | 0.00 | 2.095 | 16.40 | 0.85 | 4.7 | 94.2 | 1.1 | 0.64 | 0.71 | 0.66 | 0.82 | 0.63 | 5624 | 737 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D0i | 30535 | 2022-04-06 | 2020-09-10 | 3.0 | 2.89 | 2.95 | 3.1 | 0.008 | 0.78 | 0.0 | 0.05 | 14.12 | 0.00 | 2.237 | 5.55 | 2.60 | 2.6 | 97.4 | 0.0 | -2.14 | 0.69 | 0.81 | 2.98 | 3.1 | 0.011 | 1.05 | 2.0 | 0.04 | 16.56 | 0.00 | 1.747 | 8.00 | 2.21 | 0.9 | 99.1 | 0.0 | 1.61 | 1.40 | 0.69 | 0.83 | 2.70 | 22164 | 2544 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6Z80 | 11113 | 2022-04-09 | 2020-06-02 | 3.0 | 3.21 | — | 3.2 | 0.016 | 1.22 | 0.0 | 0.07 | 9.98 | 0.01 | 2.030 | 3.48 | 0.00 | 3.4 | 96.2 | 0.4 | -3.67 | 0.70 | 0.73 | 3.14 | 3.2 | 0.002 | 0.63 | 0.0 | 0.05 | 16.08 | 0.00 | 2.129 | 6.69 | 2.26 | 3.4 | 96.6 | 0.0 | -0.22 | 2.53 | 0.66 | 0.76 | 1.98 | 21460 | 2660 | 40 | 0 | 20 | 0 | 0 | logfile |
✘ | 7CWS | 30486 | 2022-04-08 | 2020-08-31 | 3.4 | 3.74 | — | 3.3 | 0.008 | 1.12 | 10.0 | 0.07 | 10.02 | 0.01 | 1.462 | 32.36 | 0.20 | 6.8 | 93.0 | 0.2 | -3.39 | 0.70 | 0.56 | 2.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36389 | 4602 | 33 | 0 | 46 | 0 | 0 | logfile |
✔ | 7KDP | 22828 | 2022-04-05 | 2020-10-09 | 3.6 | 3.84 | — | 3.8 | 0.007 | 0.93 | 0.0 | 0.05 | 14.04 | 0.00 | 2.184 | 11.87 | 0.12 | 13.8 | 86.2 | 0.0 | -2.89 | 0.71 | 0.81 | 2.28 | 3.8 | 0.003 | 0.71 | 0.0 | 0.05 | 15.76 | 0.01 | 2.211 | 8.72 | 0.30 | 13.1 | 86.9 | 0.0 | -2.18 | 2.00 | 0.70 | 0.81 | 1.90 | 15844 | 1914 | 6 | 0 | 34 | 0 | 0 | logfile |
✔ | 7K7K | 22701 | 2022-04-08 | 2020-09-23 | 3.56 | 3.71 | — | 3.7 | 0.009 | 0.92 | 0.0 | 0.05 | 15.87 | 0.01 | 1.827 | 16.18 | 1.39 | 7.7 | 92.3 | 0.0 | -6.33 | 0.54 | 0.86 | 1.36 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 18.95 | 0.00 | 2.125 | 10.78 | 0.94 | 6.7 | 93.3 | 0.0 | 0.98 | 2.60 | 0.53 | 0.84 | 1.15 | 36204 | 4788 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LYG | 30016 | 2022-04-05 | 2020-02-14 | 3.1 | 3.32 | — | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.35 | 0.00 | 2.299 | 7.74 | 0.00 | 1.7 | 98.3 | 0.0 | -0.02 | 0.54 | 0.76 | 2.03 | 3.3 | 0.005 | 0.62 | 0.0 | 0.04 | 16.20 | 0.01 | 2.232 | 5.16 | 0.00 | 1.3 | 98.7 | 0.0 | 3.20 | 0.78 | 0.65 | 0.86 | 1.86 | 14688 | 1856 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 7Ao8 | 11837 | 2022-04-05 | 2020-10-14 | 4.5 | 5.23 | 4.51 | 3.6 | 0.011 | 1.51 | 8.0 | 0.26 | 16.21 | 0.01 | 1.219 | 8.80 | 4.18 | 6.9 | 92.5 | 0.6 | -3.46 | 0.62 | 0.31 | — | 3.6 | 0.007 | 0.99 | 0.0 | 0.05 | 14.47 | 0.01 | 1.784 | 42.20 | 0.00 | 8.3 | 91.7 | 0.0 | -2.14 | 2.68 | 0.85 | 0.75 | — | 10905 | 1350 | 9 | 0 | 8 | 0 | 0 | logfile |
✔ | 7AHo | 11789 | 2022-04-05 | 2020-09-25 | 4.18 | 3.69 | — | 3.9 | 0.006 | 0.92 | 0.0 | 0.06 | 15.60 | 0.01 | 2.254 | 6.95 | 0.21 | 4.6 | 95.4 | 0.0 | -5.45 | 0.72 | 0.77 | — | 3.9 | 0.008 | 0.97 | 0.0 | 0.05 | 15.25 | 0.01 | 1.968 | 15.51 | 0.07 | 4.5 | 95.5 | 0.0 | -2.21 | 0.77 | 0.72 | 0.77 | — | 13521 | 1748 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 7CZB | 30508 | 2022-04-04 | 2020-09-07 | 3.8 | 4.14 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.06 | 15.72 | 0.01 | 2.360 | 4.78 | 0.47 | 12.5 | 87.5 | 0.0 | -4.95 | 0.56 | 0.80 | 2.30 | 4.1 | 0.003 | 0.91 | 0.0 | 0.05 | 17.03 | 0.00 | 2.245 | 10.91 | 0.94 | 10.8 | 89.2 | 0.0 | -1.60 | 1.39 | 0.56 | 0.80 | 1.78 | 6304 | 776 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6ZY2 | 11547 | 2022-04-05 | 2020-07-30 | 3.6 | 3.75 | — | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 11.67 | 0.00 | 2.308 | 2.92 | 0.18 | 3.9 | 96.1 | 0.0 | -5.61 | 0.67 | 0.75 | 1.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15718 | 2091 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XE9 | 22145 | 2022-04-06 | 2020-06-12 | 4.3 | 5.05 | 4.38 | 4.4 | 0.003 | 0.50 | 0.0 | 0.04 | 14.92 | 0.00 | 2.096 | 21.22 | 0.77 | 5.4 | 94.6 | 0.0 | -1.78 | 0.92 | 0.82 | — | 4.4 | 0.005 | 0.67 | 0.0 | 0.04 | 14.61 | 0.00 | 2.020 | 29.35 | 0.10 | 6.6 | 93.4 | 0.0 | 0.49 | 1.45 | 0.92 | 0.83 | — | 22081 | 2949 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZH | 22531 | 2022-04-06 | 2020-09-02 | 3.59 | 3.46 | — | 3.5 | 0.006 | 0.96 | 4.0 | 0.06 | 20.55 | 0.01 | 2.095 | 16.68 | 16.34 | 8.7 | 91.3 | 0.0 | -3.42 | 0.56 | 0.73 | 1.23 | 3.6 | 0.009 | 1.07 | 0.0 | 0.04 | 19.38 | 0.01 | 1.637 | 11.54 | 0.14 | 4.4 | 95.6 | 0.0 | -0.30 | 1.63 | 0.59 | 0.73 | 1.10 | 20328 | 2562 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZ3 | 22529 | 2022-04-04 | 2020-09-01 | 2.56 | 2.99 | — | 3.0 | 0.003 | 0.62 | 0.0 | 0.05 | 13.64 | 0.00 | 2.211 | 10.50 | 1.09 | 5.8 | 94.2 | 0.0 | -2.54 | 0.51 | 0.62 | 2.00 | 2.9 | 0.008 | 0.98 | 0.0 | 0.05 | 16.95 | 0.01 | 2.004 | 19.02 | 6.55 | 9.6 | 90.4 | 0.0 | -2.34 | 1.64 | 0.47 | 0.65 | 1.40 | 8142 | 1038 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BBH | 12130 | 2022-04-07 | 2020-12-17 | 2.9 | 3.12 | 3.00 | 3.1 | 0.005 | 0.71 | 0.0 | 0.05 | 12.20 | 0.01 | 2.270 | 3.20 | 0.86 | 3.9 | 96.1 | 0.0 | -0.97 | 0.78 | 0.83 | 3.43 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.37 | 0.00 | 2.164 | 3.55 | 1.69 | 3.5 | 96.5 | 0.0 | -0.08 | 4.35 | 0.78 | 0.84 | 3.00 | 25827 | 3189 | 18 | 0 | 69 | 0 | 0 | logfile |
✔ | 6WVT | 21925 | 2022-04-07 | 2020-05-06 | 3.56 | 3.74 | — | 3.7 | 0.007 | 0.96 | 0.0 | 0.05 | 17.66 | 0.01 | 2.106 | 6.53 | 5.29 | 3.8 | 96.2 | 0.0 | -3.51 | 0.73 | 0.83 | 2.25 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 17.47 | 0.00 | 1.997 | 10.73 | 0.73 | 3.4 | 96.6 | 0.0 | 0.02 | 1.14 | 0.73 | 0.84 | 2.02 | 25248 | 3240 | 18 | 0 | 12 | 0 | 0 | logfile |
✔ | 6RBG | 4798 | 2022-04-06 | 2019-04-10 | 3.0 | 3.55 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 14.50 | 0.00 | 2.407 | 3.44 | 0.38 | 2.0 | 98.0 | 0.0 | -6.39 | 0.67 | 0.80 | 3.37 | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 17.29 | 0.00 | 2.160 | 4.94 | 1.24 | 1.3 | 98.7 | 0.0 | 0.69 | 0.57 | 0.70 | 0.83 | 2.57 | 19336 | 2464 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PM6 | 20389 | 2022-04-05 | 2019-07-01 | 2.9 | 3.37 | — | 3.4 | 0.004 | 0.89 | 0.0 | 0.05 | 10.24 | 0.01 | 2.335 | 5.13 | 0.00 | 4.9 | 95.1 | 0.0 | -4.86 | 0.54 | 0.80 | 4.25 | 3.4 | 0.004 | 0.77 | 0.0 | 0.05 | 15.86 | 0.01 | 2.195 | 9.54 | 2.57 | 5.3 | 94.7 | 0.1 | -0.86 | 0.74 | 0.52 | 0.80 | 3.69 | 14100 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 6ZY9 | 11555 | 2022-04-05 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 12.79 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | 3.4 | 0.006 | 0.88 | 0.0 | 0.04 | 15.32 | 0.01 | 2.039 | 6.81 | 0.13 | 4.3 | 95.7 | 0.0 | -1.34 | 0.68 | 0.65 | 0.80 | 1.00 | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 7KJ2 | 22891 | 2022-04-07 | 2020-10-25 | 3.6 | 3.68 | — | 3.6 | 0.013 | 1.80 | 11.0 | 0.14 | 13.76 | 0.01 | 1.596 | 6.79 | 1.69 | 6.4 | 93.1 | 0.5 | -2.22 | 0.69 | 0.71 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28560 | 3502 | 25 | 0 | 70 | 0 | 0 | logfile |