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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BC0 | 15958 | 2023-12-09 | 2022-10-14 | 3.09 | 3.54 | 2.95 | 3.5 | 0.004 | 0.59 | 0.0 | 0.04 | 13.16 | 0.01 | 2.052 | 17.19 | 7.06 | 5.0 | 95.0 | 0.0 | 0.18 | 0.54 | 0.60 | 1.08 | 3.5 | 0.005 | 0.80 | 0.0 | 0.05 | 15.71 | 0.01 | 2.043 | 25.99 | 0.34 | 6.2 | 93.8 | 0.0 | -0.55 | 0.85 | 0.55 | 0.61 | 1.12 | 10861 | 1316 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7KAM | 22775 | 2023-12-09 | 2020-10-01 | 3.8 | 4.43 | 3.92 | 4.1 | 0.003 | 0.54 | 0.0 | 0.04 | 11.79 | 0.00 | 2.150 | 5.67 | 0.00 | 3.0 | 96.9 | 0.1 | -1.16 | 0.64 | 0.82 | 1.85 | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.40 | 0.00 | 2.140 | 9.88 | 0.18 | 3.3 | 96.6 | 0.1 | 1.54 | 0.52 | 0.65 | 0.84 | 1.38 | 10916 | 1445 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VH0 | 31982 | 2023-12-08 | 2021-09-20 | 3.46 | 3.78 | — | 3.8 | 0.005 | 0.81 | 1.0 | 0.05 | 15.44 | 0.00 | 2.266 | 9.37 | 3.66 | 6.2 | 93.5 | 0.3 | -1.57 | 0.64 | 0.82 | 2.16 | 3.8 | 0.003 | 0.62 | 0.0 | 0.04 | 16.33 | 0.00 | 2.059 | 9.72 | 0.32 | 4.6 | 95.4 | 0.0 | -1.05 | 0.48 | 0.63 | 0.84 | 2.01 | 8656 | 1109 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7DFL | 30665 | 2023-12-08 | 2020-11-09 | 3.3 | 4.03 | — | 3.9 | 0.008 | 0.95 | 0.0 | 0.06 | 11.97 | 0.01 | 1.910 | 9.78 | 0.00 | 6.1 | 93.9 | 0.0 | -0.96 | 0.63 | 0.75 | 2.51 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 15.67 | 0.00 | 2.070 | 13.69 | 0.00 | 4.7 | 95.3 | 0.0 | -0.18 | 0.91 | 0.56 | 0.73 | 2.23 | 8987 | 1133 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6XWo | 10633 | 2023-12-09 | 2020-01-24 | 3.39 | 4.01 | — | 3.8 | 0.006 | 0.69 | 0.0 | 0.04 | 13.23 | 0.01 | 2.167 | 9.83 | 0.00 | 6.0 | 94.0 | 0.0 | -3.53 | 0.74 | 0.82 | 1.64 | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.88 | 0.00 | 2.180 | 9.22 | 0.30 | 3.2 | 96.8 | 0.0 | 1.04 | 0.54 | 0.73 | 0.85 | 0.91 | 9555 | 1281 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KAU | 22784 | 2023-12-09 | 2020-10-01 | 4.0 | 4.56 | 4.11 | 4.3 | 0.003 | 0.56 | 0.0 | 0.04 | 12.12 | 0.00 | 2.251 | 6.32 | 0.00 | 3.2 | 96.8 | 0.0 | -0.93 | 0.64 | 0.84 | — | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.17 | 0.00 | 2.154 | 8.65 | 0.00 | 2.7 | 97.3 | 0.0 | 2.29 | 1.35 | 0.65 | 0.84 | — | 10711 | 1340 | 7 | 0 | 56 | 0 | 0 | logfile |
✔ | 7X9A | 33069 | 2023-12-08 | 2022-03-15 | 3.2 | 3.87 | — | 3.6 | 0.003 | 0.51 | 0.0 | 0.04 | 10.43 | 0.00 | 2.251 | 7.09 | 0.00 | 3.0 | 97.0 | 0.0 | -2.79 | 0.67 | 0.69 | 1.31 | 3.6 | 0.003 | 0.72 | 0.0 | 0.04 | 14.53 | 0.00 | 2.184 | 15.54 | 0.69 | 4.6 | 95.4 | 0.0 | -0.75 | 0.75 | 0.70 | 0.81 | 1.64 | 7156 | 950 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B8G | 15913 | 2023-12-09 | 2022-10-04 | 3.39 | 3.99 | 3.34 | 3.8 | 0.004 | 0.56 | 0.0 | 0.04 | 13.75 | 0.01 | 2.096 | 11.04 | 7.59 | 4.2 | 95.8 | 0.0 | 0.87 | 0.66 | 0.82 | 2.32 | 3.8 | 0.003 | 0.58 | 0.0 | 0.04 | 15.10 | 0.01 | 2.158 | 11.08 | 0.38 | 3.8 | 96.2 | 0.0 | 1.30 | 1.89 | 0.64 | 0.81 | 2.16 | 12086 | 1464 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XA3 | 33086 | 2023-12-09 | 2022-03-17 | 2.9 | 2.18 | — | 2.1 | 0.005 | 0.85 | 0.0 | 0.05 | 7.87 | 0.01 | 2.250 | 4.13 | 0.00 | 2.5 | 97.5 | 0.0 | 0.60 | 0.75 | 0.74 | 3.21 | 1.8 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.192 | 9.41 | 2.38 | 3.4 | 96.6 | 0.0 | 1.61 | 1.17 | 0.78 | 0.78 | 2.75 | 9591 | 1220 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QP6 | 4611 | 2023-12-09 | 2019-02-13 | 3.2 | 3.29 | 3.19 | 3.3 | 0.010 | 1.06 | 0.0 | 0.18 | 15.83 | 0.01 | 1.975 | 5.89 | 0.45 | 2.8 | 97.2 | 0.0 | -2.74 | 0.64 | 0.80 | 2.31 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 16.78 | 0.00 | 2.093 | 9.35 | 0.75 | 2.8 | 97.2 | 0.0 | 0.56 | 0.51 | 0.63 | 0.81 | 2.30 | 12330 | 1482 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 7o6B | 12737 | 2023-12-10 | 2021-04-09 | 3.88 | 4.21 | 4.15 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 11.54 | 0.01 | 2.128 | 6.00 | 0.38 | 4.3 | 95.7 | 0.0 | -0.87 | 0.75 | 0.67 | 0.37 | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 14.20 | 0.00 | 2.003 | 10.44 | 0.25 | 4.4 | 95.6 | 0.0 | 0.50 | 1.17 | 0.76 | 0.70 | 0.37 | 14200 | 879 | 1 | 0 | 0 | 0 | 7040 | logfile |
✔ | 7FiN | 31604 | 2023-12-09 | 2021-07-31 | 3.1 | 3.73 | — | 3.6 | 0.004 | 0.81 | 0.0 | 0.06 | 8.43 | 0.01 | 2.249 | 4.31 | 0.00 | 2.5 | 97.5 | 0.0 | -1.11 | 0.64 | 0.77 | 2.24 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.84 | 0.00 | 2.076 | 9.68 | 0.30 | 2.3 | 97.7 | 0.0 | 1.03 | 2.34 | 0.66 | 0.80 | 1.81 | 9524 | 1169 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6D7W | 7826 | 2023-12-08 | 2018-04-25 | 3.8 | 3.93 | — | 3.9 | 0.007 | 1.21 | 4.0 | 0.07 | 11.66 | 0.01 | 2.210 | 13.57 | 2.73 | 6.7 | 93.3 | 0.0 | -3.65 | 0.58 | 0.77 | 1.57 | 3.8 | 0.004 | 0.76 | 0.0 | 0.05 | 15.72 | 0.00 | 2.149 | 12.39 | 0.63 | 7.3 | 92.7 | 0.0 | -0.22 | 1.35 | 0.59 | 0.78 | 1.46 | 8946 | 1087 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 7QPA | 14116 | 2023-12-09 | 2022-01-03 | 3.18 | 3.43 | 3.17 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 15.17 | 0.01 | 2.208 | 8.98 | 0.00 | 2.2 | 97.8 | 0.0 | 1.43 | 0.55 | 0.74 | 1.92 | 3.5 | 0.003 | 0.53 | 0.0 | 0.04 | 15.67 | 0.00 | 2.026 | 9.91 | 0.18 | 3.1 | 96.9 | 0.0 | 1.35 | 0.43 | 0.51 | 0.74 | 1.99 | 10814 | 654 | 6 | 0 | 4 | 64 | 5540 | logfile |
✔ | 6oiJ | 20078 | 2023-12-08 | 2019-04-09 | 3.3 | 3.38 | — | 3.3 | 0.006 | 0.94 | 0.0 | 0.06 | 15.71 | 0.01 | 2.236 | 5.95 | 0.77 | 4.9 | 95.1 | 0.0 | -3.70 | 0.68 | 0.81 | 2.83 | 3.3 | 0.004 | 0.66 | 0.0 | 0.04 | 16.17 | 0.00 | 1.557 | 16.35 | 0.22 | 3.5 | 96.5 | 0.0 | -2.11 | 0.42 | 0.69 | 0.84 | 2.61 | 8877 | 1152 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 7SGD | 25107 | 2023-12-08 | 2021-10-05 | 3.97 | 4.40 | 3.79 | 4.1 | 0.024 | 1.80 | 3.0 | 0.17 | 9.82 | 0.01 | 2.477 | 1.47 | 0.00 | 1.8 | 98.2 | 0.0 | 0.20 | 0.84 | 0.81 | 2.57 | 4.1 | 0.004 | 0.92 | 0.0 | 0.05 | 15.05 | 0.00 | 2.191 | 15.73 | 0.66 | 4.9 | 95.1 | 0.0 | 0.33 | 1.52 | 0.85 | 0.83 | 2.03 | 9120 | 1014 | 39 | 0 | 75 | 0 | 0 | logfile |
✔ | 6Q2N | 20575 | 2023-12-10 | 2019-08-08 | 4.4 | 4.43 | — | 4.3 | 0.008 | 1.24 | 0.0 | 0.06 | 9.78 | 0.01 | 1.449 | 11.01 | 0.68 | 9.6 | 90.2 | 0.2 | -4.25 | 0.60 | 0.56 | — | 4.3 | 0.004 | 0.81 | 0.0 | 0.05 | 11.58 | 0.01 | 2.192 | 17.37 | 0.00 | 9.9 | 90.1 | 0.0 | -2.55 | 0.96 | 0.61 | 0.58 | — | 13140 | 1678 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6oiK | 20079 | 2023-12-10 | 2019-04-09 | 3.6 | 3.73 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 14.96 | 0.01 | 1.986 | 8.48 | 1.04 | 6.4 | 93.6 | 0.0 | -3.68 | 0.70 | 0.78 | 2.74 | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 15.37 | 0.00 | 2.117 | 13.90 | 0.81 | 3.4 | 96.6 | 0.0 | -1.02 | 0.55 | 0.70 | 0.82 | 1.90 | 8496 | 1125 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7FDK | 31546 | 2023-12-08 | 2021-07-16 | 3.69 | 3.82 | — | 3.8 | 0.008 | 0.88 | 0.0 | 0.05 | 15.52 | 0.01 | 2.080 | 18.21 | 0.29 | 13.2 | 86.7 | 0.1 | -4.54 | 0.61 | 0.79 | 1.60 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 16.52 | 0.00 | 2.142 | 14.39 | 0.29 | 8.5 | 91.2 | 0.3 | -0.83 | 0.67 | 0.61 | 0.77 | 1.15 | 6449 | 791 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7R0C | 14221 | 2023-12-08 | 2022-02-01 | 4.73 | 5.24 | 5.06 | 5.1 | 0.013 | 0.91 | 1.0 | 0.05 | 13.19 | 0.01 | 2.100 | 26.54 | 0.14 | 6.1 | 93.9 | 0.0 | -0.89 | 0.64 | 0.73 | — | 5.1 | 0.003 | 0.70 | 0.0 | 0.05 | 13.11 | 0.01 | 2.170 | 20.88 | 0.00 | 5.4 | 94.6 | 0.0 | -0.57 | 0.53 | 0.64 | 0.73 | — | 6816 | 875 | 4 | 0 | 1 | 0 | 0 | logfile |