Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EB4	31051	2022-07-05	2021-03-08	3.5	4.17	—	4.0	0.002	0.56	0.0	0.04	13.43	0.00	2.156	7.11	0.04	4.9	95.1	0.1	-0.84	0.81	0.79	1.94	4.0	0.008	0.74	1.0	0.05	15.01	0.00	2.197	9.48	0.23	7.5	92.5	0.0	-1.03	1.16	0.80	0.78	1.93	24832	3047	35	0	75	0	0	logfile
✔	7EB5	31052	2022-07-05	2021-03-08	3.4	4.18	—	4.0	0.003	0.58	0.0	0.05	14.05	0.00	2.162	7.62	0.11	5.5	94.4	0.1	-1.06	0.79	0.77	1.94	4.0	0.003	0.57	0.0	0.05	15.29	0.00	2.145	8.51	0.26	5.7	94.2	0.1	-0.88	1.14	0.80	0.79	1.68	24902	3058	33	0	74	0	0	logfile
✔	7EAZ	31047	2022-07-05	2021-03-08	3.5	4.16	—	4.0	0.003	0.60	0.0	0.05	13.88	0.00	2.146	8.32	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.59	0.0	0.05	15.26	0.00	2.124	8.13	0.07	5.1	94.8	0.0	-0.76	0.30	0.81	0.79	2.00	24956	3051	38	0	82	0	0	logfile
✔	7EB3	31050	2022-07-05	2021-03-08	3.6	4.26	—	4.0	0.004	0.60	0.0	0.05	13.71	0.00	2.071	7.94	0.04	6.3	93.6	0.1	-1.11	0.83	0.81	2.19	4.0	0.004	0.60	0.0	0.05	15.09	0.00	2.045	8.21	0.30	6.8	93.2	0.1	-0.91	1.59	0.83	0.81	1.78	24844	3041	36	0	79	0	0	logfile
✔	7EB0	31048	2022-07-05	2021-03-08	3.6	4.22	—	4.0	0.003	0.59	0.0	0.05	14.09	0.00	2.188	7.24	0.00	5.9	94.1	0.0	-1.14	0.81	0.79	2.19	4.0	0.007	0.74	0.0	0.05	15.44	0.00	2.050	10.60	0.30	8.2	91.8	0.0	-1.57	1.15	0.82	0.81	1.82	24946	3055	35	0	80	0	0	logfile
✘	7E0K	30935	2022-07-03	2021-01-28	3.09	2.58	—	3.1	0.011	1.38	0.0	0.05	17.88	0.02	1.210	8.40	0.00	7.2	92.8	0.0	-3.05	0.62	0.82	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8044	677	6	0	58	0	0	logfile
✔	7EJ4	30669	2022-07-06	2021-04-01	3.6	4.33	—	3.9	0.002	0.57	0.0	0.05	13.31	0.00	2.132	10.08	0.00	5.9	94.0	0.1	-1.14	0.84	0.80	1.79	3.9	0.002	0.54	0.0	0.04	14.84	0.00	2.147	9.51	0.09	5.3	94.6	0.1	-0.74	0.33	0.84	0.80	1.54	30040	3725	39	0	75	0	0	logfile
✘	7NG8	12309	2022-07-04	2021-02-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20173	1341	4	0	0	0	9979	logfile
✔	7MY2	24077	2022-07-05	2021-05-20	2.65	3.40	2.77	3.2	0.007	0.84	7.0	0.06	13.85	0.01	2.056	12.17	1.04	7.0	93.0	0.0	-2.12	0.82	0.88	3.09	3.2	0.005	0.63	0.0	0.05	15.00	0.00	2.093	9.66	1.71	6.1	93.9	0.0	-1.00	0.34	0.80	0.87	2.75	27884	3476	25	0	65	0	0	logfile
✔	7DD6	30645	2022-07-03	2020-10-27	3.2	3.88	—	3.7	0.008	0.78	0.0	0.05	15.85	0.00	2.126	16.96	0.07	5.3	94.7	0.0	-3.07	0.70	0.77	2.12	3.7	0.004	0.70	0.0	0.05	16.46	0.01	2.180	8.86	0.30	2.4	97.6	0.0	-0.09	0.75	0.72	0.81	1.91	12678	1585	8	0	22	0	0	logfile
✔	7DZP	30927	2022-07-03	2021-01-25	4.0	3.94	4.01	3.9	0.007	1.43	5.0	0.10	13.56	0.01	2.107	44.74	10.17	5.4	94.6	0.0	0.02	0.75	0.76	—	3.9	0.005	0.79	0.0	0.04	15.36	0.01	2.193	9.10	0.77	3.9	96.1	0.0	0.34	0.77	0.76	0.78	—	7366	1015	3	0	6	0	0	logfile
✘	7DD5	30644	2022-07-03	2020-10-27	3.2	3.92	—	3.8	0.008	0.71	0.0	0.05	15.79	0.00	1.131	17.61	0.15	4.9	95.1	0.0	-3.16	0.65	0.73	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12810	1599	10	0	24	2	0	logfile
✘	7M3J	23655	2022-07-03	2021-03-18	4.1	3.93	—	3.9	0.010	1.08	3.0	0.07	11.56	0.01	1.133	2.71	0.12	5.8	94.2	0.0	-2.70	0.82	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11001	1562	5	0	11	0	0	logfile
✘	7M3E	23652	2022-07-03	2021-03-18	3.2	2.49	—	3.2	0.006	0.92	0.0	0.06	12.80	0.01	1.157	2.02	0.00	4.1	95.9	0.0	-2.73	0.84	0.83	3.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13091	1624	5	0	19	0	0	logfile
✔	6XoW	22282	2022-07-03	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.43	0.01	1.991	24.59	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.003	0.76	0.0	0.04	13.40	0.01	2.106	25.18	0.23	3.7	96.3	0.0	0.29	0.80	0.86	0.56	—	7711	966	1	0	0	0	0	logfile
✔	7M3G	23654	2022-07-03	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.35	0.01	2.182	4.31	2.29	3.2	96.8	0.0	0.03	1.15	0.85	0.87	3.24	13298	1627	11	0	41	0	0	logfile
✘	7DXA	30902	2022-07-04	2021-01-18	3.14	2.79	—	3.0	0.020	2.37	2.0	0.14	20.59	0.03	1.222	13.10	10.97	5.8	94.1	0.2	-4.41	0.75	0.83	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15162	1629	23	0	50	0	0	logfile
✔	7M3F	23653	2022-07-03	2021-03-18	2.8	2.45	—	2.7	0.008	1.00	0.0	0.06	12.25	0.01	2.245	2.64	0.00	5.0	95.0	0.0	-2.56	0.84	0.86	4.26	2.7	0.005	0.65	1.0	0.06	14.90	0.00	2.122	4.27	1.17	4.0	96.0	0.1	-0.40	0.40	0.85	0.87	3.32	13084	1631	7	0	23	0	0	logfile
✘	7DXH	30909	2022-07-04	2021-01-18	3.14	2.87	—	2.9	0.020	2.46	1.0	0.12	20.97	0.03	1.222	23.06	7.91	6.4	92.6	1.0	-4.83	0.71	0.81	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20054	2150	31	0	69	0	0	logfile
✔	6XoV	22281	2022-07-03	2020-07-07	3.3	3.79	3.30	3.4	0.005	0.76	1.0	0.05	14.28	0.01	2.100	13.99	0.35	5.0	95.0	0.0	-1.92	0.85	0.80	2.36	3.5	0.003	0.66	0.0	0.04	15.23	0.00	2.186	10.74	0.12	3.0	97.0	0.0	0.99	0.98	0.84	0.80	1.86	7755	969	3	0	3	0	0	logfile

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