Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6SL5	10236	2023-08-27	2019-08-18	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✔	7T11	25587	2023-08-10	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.76	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.005	0.68	0.0	0.04	13.72	0.00	2.232	3.33	0.93	3.5	96.5	0.0	0.85	0.43	0.62	0.80	3.68	8151	1132	6	0	2	0	0	logfile
✘	7SL7	25193	2023-08-15	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14732	1826	10	0	0	0	0	logfile
✔	7MHZ	23837	2023-08-09	2021-04-16	3.2	3.82	—	3.7	0.005	0.77	0.0	1.63	19.46	0.00	2.210	7.55	0.00	3.4	96.6	0.0	1.45	0.61	0.79	2.94	3.7	0.003	2.46	0.0	0.26	16.38	0.00	2.184	6.70	0.17	2.7	97.3	0.0	1.74	0.33	0.61	0.81	2.69	6189	723	6	0	15	0	0	logfile
✔	7AK5	11810	2023-08-13	2020-09-29	3.17	2.97	3.17	3.1	0.005	0.73	0.0	1.04	15.21	0.00	1.865	7.38	0.01	5.9	94.0	0.0	-3.68	0.66	0.82	3.16	3.1	0.008	1.59	0.0	0.31	16.55	0.00	2.139	8.24	0.17	3.5	96.5	0.0	0.51	1.48	0.68	0.86	2.52	65895	8069	64	0	28	0	0	logfile
✔	8AB7	15313	2023-08-22	2022-07-04	3.3	2.57	3.15	3.1	0.013	2.00	78.0	0.12	18.36	0.01	1.874	7.05	5.54	2.9	97.0	0.1	-1.88	0.61	0.84	3.31	2.9	0.006	0.69	0.0	0.05	17.70	0.00	2.020	11.05	0.52	2.3	97.6	0.1	0.81	1.37	0.65	0.85	2.81	33654	4124	34	0	36	0	0	logfile
✔	7UZ7	26881	2023-08-21	2022-05-08	2.9	3.46	3.07	3.4	0.005	0.61	0.0	0.04	12.96	0.01	2.121	9.12	0.00	3.5	96.5	0.0	0.04	0.71	0.78	2.76	3.4	0.003	0.61	0.0	0.04	14.92	0.00	2.185	9.75	1.48	3.6	96.4	0.0	0.00	0.36	0.69	0.79	2.47	30552	3861	15	0	45	0	0	logfile
✘	7N4U	24178	2023-08-14	2021-06-04	3.34	3.91	—	3.8	0.014	1.80	0.0	0.29	15.32	0.01	2.102	4.84	1.79	5.3	94.5	0.2	-2.74	0.58	0.74	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15396	1906	10	0	28	0	0	logfile
✔	8ADi	15363	2023-08-17	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✘	7BC4	12138	2023-08-19	2020-12-18	3.1	2.99	2.99	3.0	0.008	0.88	1.0	0.06	15.49	0.01	2.285	5.33	1.19	6.4	93.6	0.0	-5.07	0.51	0.85	3.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27610	3514	2	0	1	0	0	logfile
✔	7D4Q	30576	2023-08-17	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.34	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.004	0.53	0.0	0.04	15.85	0.00	2.191	6.74	0.71	1.9	98.1	0.0	2.40	0.48	0.69	0.88	4.46	22388	2672	8	0	24	0	0	logfile
✔	5WQ8	6676	2023-08-10	2016-11-23	3.26	3.41	—	3.3	0.009	1.18	0.0	0.06	10.83	0.01	1.654	27.56	0.24	4.8	95.0	0.2	-2.76	0.72	0.83	2.86	3.3	0.003	0.65	0.0	0.05	14.43	0.00	2.173	10.95	0.29	3.2	96.6	0.2	0.01	1.47	0.71	0.83	1.72	56460	7440	15	0	0	0	0	logfile
✔	7WKA	32564	2023-08-21	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.7	0.005	0.81	0.0	0.05	13.97	0.00	2.073	18.03	0.91	4.6	95.4	0.1	-0.79	1.63	0.77	0.74	1.25	31353	4017	7	0	0	0	0	logfile
✔	7YQZ	34040	2023-08-19	2022-08-08	3.84	4.12	3.90	3.9	0.005	0.80	2.0	0.05	14.14	0.01	1.625	6.53	0.07	6.8	92.9	0.3	-2.84	0.80	0.80	1.56	3.9	0.003	0.62	0.0	0.04	15.46	0.00	2.135	10.60	0.07	7.0	93.0	0.0	-1.61	1.16	0.80	0.81	1.34	28266	3531	12	0	53	0	0	logfile
✔	6VoH	21264	2023-08-24	2020-01-30	4.16	3.96	—	4.0	0.005	0.99	0.0	0.05	15.53	0.01	2.172	14.16	0.49	7.7	92.0	0.3	-3.96	0.70	0.74	—	3.9	0.003	0.78	0.0	0.04	14.97	0.00	2.104	18.24	0.00	7.9	91.9	0.2	-1.36	0.69	0.69	0.72	—	39159	5193	31	0	5	0	0	logfile
✘	7RR9	24656	2023-08-11	2021-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9094	1120	4	0	8	0	0	logfile
✔	7WSH	32758	2023-08-12	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	9.90	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.003	0.59	0.0	0.04	15.50	0.00	2.123	9.77	2.01	1.8	98.2	0.0	1.20	0.84	0.72	0.85	3.53	6457	793	4	0	2	0	0	logfile
✔	7E27	30953	2023-08-12	2021-02-04	2.29	2.55	—	2.6	0.007	0.91	0.0	0.06	14.59	0.01	2.322	2.20	0.42	1.4	98.6	0.0	-2.60	0.63	0.86	4.69	2.5	0.004	0.63	0.0	0.05	15.83	0.00	2.192	3.34	2.03	1.1	98.9	0.0	1.34	0.40	0.64	0.87	4.68	11475	1435	15	0	5	90	0	logfile
✔	6M3W	30072	2023-08-10	2020-03-04	3.9	4.04	—	3.9	0.011	1.31	0.0	0.08	11.59	0.01	2.264	9.72	0.66	11.1	88.9	0.0	-4.25	0.82	0.78	1.15	3.9	0.004	0.80	0.0	0.06	16.07	0.01	2.138	15.98	1.00	7.5	92.5	0.0	-1.66	0.95	0.82	0.78	0.75	8307	1032	6	0	24	0	0	logfile
✔	8H8X	34551	2023-08-13	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.004	0.60	0.0	0.04	13.05	0.00	2.028	7.23	0.13	6.6	93.4	0.0	-0.11	1.95	0.79	0.77	1.80	13418	850	1	0	0	0	6667	logfile

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