Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LJV	4062	2022-12-13	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.58	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	3.7	0.004	0.80	0.0	0.05	16.51	0.01	1.932	12.91	0.44	3.3	96.7	0.0	-0.24	2.49	0.72	0.81	1.95	15000	1950	12	0	12	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	6UM1	20815	2022-12-13	2019-10-08	3.46	3.57	—	3.5	0.014	1.83	7.0	0.09	15.16	0.01	2.014	9.77	0.84	6.9	92.9	0.2	-4.82	0.69	0.70	2.32	3.5	0.003	0.75	0.0	0.05	16.30	0.00	2.179	15.75	0.26	10.5	89.4	0.1	-3.03	0.60	0.72	0.76	2.06	17134	2208	4	0	8	0	0	logfile
✔	5FTL	3297	2022-12-19	2016-01-14	3.3	2.96	—	2.9	0.010	1.12	0.0	0.06	10.70	0.01	2.214	17.11	0.00	6.1	93.2	0.7	-4.22	0.69	0.81	2.28	2.9	0.004	0.76	0.0	0.05	16.13	0.01	2.087	10.65	0.27	5.4	94.4	0.1	-0.55	2.20	0.70	0.80	1.51	34278	4338	12	0	12	0	0	logfile
✔	6ACJ	9593	2022-12-16	2018-07-26	4.2	4.37	—	4.2	0.010	1.33	2.0	0.07	11.28	0.01	1.731	12.06	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.004	0.79	0.0	0.05	12.40	0.01	2.091	20.18	0.00	14.5	85.3	0.2	-2.68	1.55	0.75	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6JXR	9895	2022-12-12	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.94	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.003	0.71	0.0	0.04	15.79	0.00	2.119	11.45	0.43	6.5	93.4	0.1	-0.30	1.72	0.66	0.79	2.12	8437	1073	8	0	0	0	0	logfile
✔	6CFW	7468	2022-12-14	2018-02-17	3.7	3.82	—	3.8	0.010	1.27	1.0	0.07	12.05	0.01	1.968	5.45	1.60	10.7	89.0	0.4	-4.93	0.70	0.86	3.46	3.8	0.004	0.75	0.0	0.04	15.19	0.01	2.087	8.69	0.58	8.7	91.2	0.2	-1.28	1.29	0.71	0.86	2.17	19589	2530	17	0	4	0	0	logfile
✔	6Q2o	20576	2022-12-13	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.005	0.89	0.0	0.05	14.72	0.01	2.099	18.48	1.20	7.7	92.3	0.0	-1.96	2.05	0.68	0.65	0.76	15196	1900	8	0	20	0	0	logfile
✔	6VV5	21391	2022-12-15	2020-02-17	3.5	3.62	3.61	3.6	0.017	1.66	0.0	0.09	11.16	0.03	2.262	5.10	1.26	1.6	98.3	0.1	0.87	0.74	0.84	3.28	3.6	0.003	0.59	0.0	0.04	14.37	0.00	2.210	6.39	0.14	3.5	96.5	0.0	0.14	1.36	0.75	0.84	2.68	26838	3291	36	0	102	0	0	logfile
✔	6QG2	4545	2022-12-20	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.72	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.115	17.30	0.00	10.4	88.9	0.7	-1.95	1.68	0.70	0.58	—	38664	4961	16	0	0	0	0	logfile
✔	6PUS	20480	2022-12-19	2019-07-18	3.7	4.57	—	3.8	0.009	1.11	0.0	0.06	14.56	0.01	2.208	9.19	1.64	7.9	91.6	0.5	-3.61	0.75	0.84	1.56	3.8	0.003	0.61	0.0	0.04	14.62	0.00	2.182	10.19	0.28	6.9	93.0	0.1	-0.09	0.38	0.75	0.84	1.63	37380	5224	8	0	12	0	0	logfile
✔	6M18	30040	2022-12-14	2020-02-25	2.9	3.12	—	3.0	0.007	1.02	2.0	0.07	15.19	0.01	2.060	10.56	3.28	7.7	91.2	1.1	-5.88	0.68	0.73	3.22	3.0	0.003	0.67	0.0	0.04	15.88	0.00	2.013	6.66	1.68	6.5	93.4	0.1	-0.16	1.26	0.76	0.88	2.57	22534	2708	26	0	44	30	0	logfile
✔	6PUR	20479	2022-12-19	2019-07-18	4.4	5.34	—	4.1	0.008	1.07	0.0	0.06	14.69	0.01	2.255	9.98	1.66	7.9	91.6	0.5	-3.61	0.74	0.81	—	4.1	0.004	0.68	0.0	0.04	13.33	0.00	2.124	14.61	0.00	7.8	92.1	0.1	0.13	0.56	0.75	0.84	—	37268	5224	8	0	8	0	0	logfile
✔	6SP2	10279	2022-12-14	2019-08-30	3.33	3.92	3.50	3.8	0.006	0.85	0.0	0.05	15.17	0.00	1.590	8.11	0.00	4.7	95.3	0.0	-0.56	0.49	0.67	2.32	3.8	0.003	0.66	0.0	0.04	14.85	0.00	2.207	5.66	0.21	3.8	96.2	0.0	2.75	1.49	0.63	0.80	1.58	18498	2190	12	0	24	0	0	logfile
✔	6E7B	8997	2022-12-11	2018-07-25	3.5	3.67	3.28	3.7	0.006	0.83	0.0	0.04	11.47	0.00	2.009	5.71	0.14	6.5	93.5	0.0	-4.13	0.56	0.76	2.80	3.6	0.003	0.71	0.0	0.04	15.64	0.00	1.928	15.99	0.27	4.2	95.8	0.0	-1.25	0.95	0.58	0.80	2.52	6774	854	4	0	4	0	0	logfile
✔	6DLU	7957	2022-12-12	2018-06-02	3.75	3.84	—	3.8	0.009	0.94	0.0	0.05	9.95	0.00	1.944	12.65	0.23	5.7	94.3	0.0	-2.78	0.31	0.77	1.09	3.7	0.003	0.70	0.0	0.04	13.91	0.00	1.941	9.28	0.23	5.3	94.7	0.0	0.08	2.20	0.32	0.82	1.35	11991	1481	4	0	4	0	0	logfile
✔	3J1B	5391	2022-12-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.05	14.62	0.01	2.174	15.69	0.00	4.8	94.6	0.6	0.77	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	6E7C	8998	2022-12-11	2018-07-25	3.65	3.83	3.42	3.8	0.007	0.85	0.0	0.04	12.40	0.00	1.901	7.88	0.00	6.8	93.2	0.0	-4.32	0.50	0.75	3.05	3.8	0.005	0.78	0.0	0.05	15.93	0.00	1.916	20.19	0.68	5.3	94.7	0.0	-2.25	0.94	0.51	0.78	2.78	6780	854	4	0	4	0	0	logfile
✔	6E7P	9000	2022-12-13	2018-07-27	3.5	3.61	—	3.7	0.009	1.06	0.0	0.48	12.75	0.01	2.289	3.60	0.24	8.0	91.8	0.2	-5.15	0.62	0.81	4.17	3.7	0.003	0.67	0.0	0.04	13.68	0.00	2.228	6.20	0.18	5.4	94.6	0.0	-0.68	0.66	0.62	0.80	2.95	15508	1900	8	0	4	0	0	logfile
✔	6QS6	4624	2022-12-16	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.004	0.86	0.0	0.05	16.70	0.00	2.076	21.09	0.71	5.1	94.9	0.0	-0.72	1.39	0.75	0.78	0.89	28557	3568	13	0	35	0	0	logfile

• ← previous
• Page 4 of 443
• next →