Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q9G	13869	2023-08-20	2021-11-12	3.3	3.52	—	3.4	0.003	0.50	0.0	0.04	9.49	0.00	2.034	4.08	0.67	3.1	96.9	0.0	-0.07	0.82	0.80	2.69	3.4	0.003	0.55	0.0	0.04	12.53	0.00	2.214	7.62	0.25	3.2	96.8	0.0	0.49	0.58	0.84	0.85	2.43	28973	3632	22	0	52	0	0	logfile
✔	6EZJ	3999	2023-08-22	2017-11-15	3.1	3.22	—	3.2	0.007	1.12	0.0	0.06	10.82	0.01	2.111	3.79	0.00	8.2	91.8	0.0	-5.02	0.68	0.77	3.52	3.2	0.008	0.99	0.0	0.06	15.78	0.01	1.900	10.81	0.90	9.7	90.3	0.0	-2.26	1.96	0.72	0.82	3.48	33600	4440	48	0	72	0	0	logfile
✔	7TPT	26063	2023-08-27	2022-01-26	3.9	2.60	3.92	3.8	0.009	0.90	5.0	0.05	14.28	0.00	1.331	10.02	0.45	4.0	96.0	0.0	1.17	0.68	0.61	1.18	2.2	0.003	0.81	0.0	0.05	15.98	0.00	1.902	12.63	0.81	5.2	94.8	0.0	-0.60	1.31	0.70	0.66	1.42	50755	7217	52	0	47	0	0	logfile
✔	8DBZ	27318	2023-08-10	2022-06-15	4.1	4.31	4.14	4.2	0.003	0.73	0.0	0.05	12.61	0.01	2.101	19.43	0.00	6.5	93.4	0.1	-1.42	0.62	0.62	—	4.2	0.004	0.79	0.0	0.05	13.06	0.01	2.080	21.68	0.00	8.3	91.6	0.1	-1.72	0.63	0.64	0.65	—	7960	1184	9	0	0	0	0	logfile
✔	7W6K	32328	2023-08-09	2021-12-01	3.5	4.56	3.58	4.1	0.007	1.13	4.0	0.07	14.61	0.01	2.337	47.37	2.01	7.1	92.9	0.0	-3.58	0.66	0.76	1.46	4.2	0.003	0.76	0.0	0.04	17.14	0.00	2.213	13.20	0.72	4.6	95.4	0.0	1.07	3.50	0.63	0.76	1.00	6468	820	2	0	0	0	0	logfile
✔	6PoS	20418	2023-08-09	2019-07-05	4.12	4.39	—	4.2	0.003	0.68	0.0	0.04	11.58	0.01	2.116	2.48	0.00	0.1	99.9	0.0	-2.43	0.80	0.77	—	4.2	0.002	0.55	0.0	0.04	13.00	0.00	1.937	10.02	0.03	3.3	96.7	0.0	-0.01	1.03	0.82	0.80	—	53503	3425	20	0	13	0	26853	logfile
✔	7E2G	30956	2023-08-10	2021-02-05	3.61	3.75	—	3.7	0.005	0.72	0.0	0.06	13.60	0.00	2.132	13.35	0.14	9.8	90.2	0.0	-2.91	0.62	0.82	1.67	3.7	0.003	0.69	0.0	0.04	15.39	0.00	2.228	8.65	0.82	8.1	91.9	0.0	0.19	0.41	0.62	0.81	1.69	7376	901	1	0	15	0	0	logfile
✔	5XTB	6771	2023-08-19	2017-06-18	3.4	3.53	—	3.5	0.010	1.63	0.0	0.07	9.56	0.01	1.482	28.48	0.33	6.7	90.3	3.0	-1.70	0.75	0.73	1.37	3.5	0.004	0.78	0.0	0.04	15.85	0.01	2.083	14.57	0.57	6.5	92.7	0.8	-0.54	1.87	0.80	0.84	1.86	27962	3491	25	0	11	0	0	logfile
✔	7ToE	26030	2023-08-13	2022-01-24	3.0	3.29	—	3.3	0.003	0.59	0.0	0.04	14.04	0.00	2.201	8.94	0.12	3.9	96.0	0.1	-0.13	0.72	0.83	3.59	3.3	0.004	0.62	0.0	0.04	16.98	0.00	2.138	10.14	1.10	4.0	96.0	0.0	-0.24	0.48	0.74	0.87	3.05	15100	1868	4	0	0	0	0	logfile
✔	7F23	31426	2023-08-12	2021-06-10	3.58	3.82	—	3.8	0.010	1.01	0.0	0.06	15.07	0.01	2.087	17.66	0.57	4.4	95.6	0.0	-2.63	0.66	0.80	1.60	3.8	0.003	0.71	0.0	0.04	17.00	0.00	2.138	12.70	0.91	3.2	96.8	0.0	0.34	0.63	0.64	0.77	1.45	8211	1037	7	0	2	0	0	logfile
✔	6o84	0650	2023-08-09	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.78	0.0	0.04	16.35	0.00	2.131	8.82	0.16	7.3	92.7	0.0	1.35	1.28	0.61	0.82	2.66	6224	712	2	0	118	0	0	logfile
✔	6ZLG	11265	2023-08-22	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	8D63	27215	2023-08-12	2022-06-06	3.14	3.26	3.09	3.2	0.009	0.99	0.0	0.06	15.75	0.01	2.290	9.81	0.36	5.0	94.7	0.3	-1.01	0.65	0.81	4.38	3.2	0.005	0.55	0.0	0.05	15.24	0.00	2.138	5.24	0.07	3.9	96.1	0.0	0.68	0.32	0.67	0.84	4.18	12785	1535	10	0	5	0	0	logfile
✔	7E2D	30955	2023-08-18	2021-02-05	3.71	3.99	—	3.8	0.007	1.44	3.0	0.08	14.42	0.01	1.563	7.01	0.69	10.0	89.1	0.9	-4.65	0.81	0.70	1.33	3.7	0.005	0.83	0.0	0.05	16.03	0.00	2.138	17.49	0.54	13.2	86.5	0.2	-2.36	0.75	0.82	0.75	1.29	23331	3291	11	0	0	0	0	logfile
✔	7PDG	13337	2023-08-10	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.74	0.00	2.173	12.63	0.00	4.3	95.7	0.0	0.21	0.88	0.58	0.72	—	7642	970	2	0	0	0	0	logfile
✔	8D66	27218	2023-08-12	2022-06-06	3.14	3.25	3.04	3.2	0.009	1.02	0.0	0.06	16.96	0.01	2.309	7.77	0.00	6.2	93.8	0.0	-1.63	0.69	0.83	3.44	3.2	0.004	0.57	0.0	0.05	15.52	0.00	2.214	7.58	0.36	5.2	94.8	0.0	0.02	0.37	0.66	0.83	3.50	12800	1540	10	0	5	0	0	logfile
✔	7XJL	33231	2023-08-10	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.003	0.71	0.0	0.04	15.86	0.00	2.122	16.26	0.58	3.0	97.0	0.0	0.94	0.47	0.62	0.77	1.62	8527	1137	6	0	0	0	0	logfile
✔	5G06	3366	2023-08-19	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	7o17	12692	2023-08-12	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.51	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.76	0.0	0.04	14.39	0.00	1.928	23.91	0.00	8.0	92.0	0.0	-1.97	0.57	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✘	8EFB	28077	2023-08-11	2022-09-08	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8947	1136	6	0	1	0	0	logfile

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