Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y9U	33692	2023-02-18	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✔	7AJQ	11806	2023-02-19	2020-09-29	4.0	3.67	4.30	4.2	0.002	0.55	0.0	0.03	13.10	0.00	2.208	12.84	0.00	3.5	96.5	0.0	-0.98	0.76	0.76	—	4.2	0.003	0.92	0.0	0.05	15.83	0.00	2.139	20.36	0.21	3.6	96.4	0.0	0.85	0.86	0.77	0.77	—	9210	1222	7	0	0	0	0	logfile
✔	6XDC	22136	2023-02-17	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.60	0.0	0.04	15.30	0.00	2.197	9.57	2.59	3.7	96.3	0.0	0.98	1.70	0.45	0.69	3.50	3150	386	2	0	0	0	0	logfile
✔	6PZK	20536	2023-02-20	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.30	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.20	0.00	2.151	9.82	0.34	2.2	97.8	0.0	1.46	1.70	0.73	0.82	1.75	13153	1624	5	0	0	0	0	logfile
✔	7ADK	11729	2023-02-23	2020-09-15	2.8	3.03	2.81	3.0	0.014	2.03	21.0	0.12	15.24	0.02	0.997	1.77	0.43	9.4	90.6	0.0	-2.46	0.47	0.68	3.61	3.0	0.003	0.67	0.0	0.04	17.37	0.00	1.872	9.54	2.94	8.2	91.8	0.0	-1.87	2.91	0.56	0.76	2.72	20869	1317	2	0	0	0	10260	logfile
✔	6WKW	21811	2023-02-19	2020-04-17	3.6	3.75	—	3.6	0.017	1.19	0.0	0.06	14.39	0.00	2.066	12.81	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	3.7	0.004	0.67	0.0	0.04	15.38	0.00	2.140	9.64	0.41	7.6	92.2	0.2	-2.36	0.45	0.86	0.90	2.99	10037	1319	8	0	4	0	0	logfile
✔	7Y4S	33606	2023-02-17	2022-06-16	3.5	3.72	3.47	3.8	0.004	0.74	0.0	0.04	12.74	0.01	2.373	5.20	0.46	2.9	97.1	0.0	1.47	0.69	0.77	3.18	3.8	0.003	0.59	0.0	0.04	15.07	0.00	2.245	9.12	0.69	2.5	97.5	0.0	2.64	1.58	0.73	0.79	2.96	4940	686	2	0	0	0	0	logfile
✔	7Y9V	33693	2023-02-18	2022-06-26	3.2	3.43	3.15	3.4	0.013	1.21	6.0	0.06	10.86	0.01	2.057	4.79	0.48	5.1	94.9	0.0	-5.91	0.62	0.83	3.18	3.4	0.003	0.66	0.0	0.04	13.79	0.00	2.177	7.54	0.00	4.0	96.0	0.0	-0.32	1.22	0.64	0.86	2.32	7734	988	8	0	2	4	0	logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✘	6LHS	0896	2023-02-24	2019-12-10	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22737	1456	2	0	0	0	11313	logfile
✔	7X9C	33071	2023-02-18	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.62	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.69	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	7XM9	33292	2023-02-20	2022-04-25	3.22	3.46	3.25	3.5	0.012	0.83	3.0	0.06	16.67	0.01	1.933	19.16	3.45	4.7	95.0	0.3	-1.91	0.54	0.72	1.74	3.5	0.003	0.64	0.0	0.04	17.41	0.00	2.163	8.81	0.29	5.0	95.0	0.0	0.51	1.18	0.54	0.79	1.95	12490	1523	7	0	11	0	0	logfile
✘	7VKT	32018	2023-02-19	2021-10-01	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9100	1143	6	0	6	7	0	logfile
✔	7Ji0	22341	2023-02-17	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✘	8DNC	27563	2023-02-20	2022-07-11	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10672	1300	6	0	5	0	0	logfile
✔	7XVG	33486	2023-02-17	2022-05-23	3.6	3.89	—	3.8	0.004	0.73	0.0	0.05	14.26	0.00	2.074	12.84	0.28	5.9	94.0	0.1	-0.97	0.74	0.78	1.82	3.8	0.003	0.73	0.0	0.04	16.30	0.00	2.168	11.22	1.10	6.2	93.8	0.0	-0.75	0.54	0.75	0.78	1.22	6438	794	2	0	0	0	0	logfile
✔	7Voo	32052	2023-02-22	2021-10-14	3.9	4.07	—	3.9	0.004	0.89	1.0	0.05	14.75	0.01	1.930	21.49	0.29	12.7	86.9	0.4	-2.96	0.61	0.69	1.12	3.9	0.003	0.78	0.0	0.05	16.95	0.01	2.115	20.23	0.29	11.2	88.5	0.3	-2.56	0.55	0.62	0.71	1.22	9686	1245	6	0	12	0	0	logfile
✔	7S9B	24931	2023-02-19	2021-09-20	4.2	4.16	—	4.0	0.006	0.82	0.0	0.05	11.72	0.00	2.213	19.98	0.78	9.9	89.8	0.3	-0.99	0.61	0.81	—	4.0	0.003	0.67	0.0	0.04	11.95	0.00	2.218	12.11	0.00	8.0	92.0	0.0	0.41	0.42	0.60	0.80	—	10458	1356	2	0	0	0	0	logfile
✔	7WHR	32509	2023-02-22	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.002	0.65	0.0	0.05	15.04	0.00	2.235	10.83	0.11	6.9	93.0	0.1	-2.70	0.36	0.63	0.70	1.70	16914	2184	6	0	0	0	0	logfile
✔	7WVW	32860	2023-02-18	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.28	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.45	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile

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