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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7VLR | 32024 | 2024-03-14 | 2021-10-05 | 3.4 | 3.65 | 3.41 | 3.6 | 0.004 | 0.61 | 0.0 | 0.04 | 12.84 | 0.00 | 2.052 | 4.29 | 0.94 | 1.6 | 98.4 | 0.0 | 1.47 | 0.70 | 0.84 | 1.66 | 3.6 | 0.003 | 0.54 | 0.0 | 0.04 | 15.55 | 0.00 | 2.024 | 7.21 | 2.61 | 1.2 | 98.8 | 0.0 | 3.02 | 1.52 | 0.65 | 0.84 | 1.41 | 9003 | 1145 | 1 | 0 | 5 | 0 | 0 | logfile |
✔ | 8G8F | 29848 | 2024-03-21 | 2023-02-17 | 2.6 | 2.58 | 2.77 | 2.6 | 0.007 | 1.02 | 0.0 | 0.05 | 18.18 | 0.00 | 2.173 | 7.58 | 1.87 | 6.0 | 93.6 | 0.4 | -0.22 | 0.65 | 0.87 | 4.09 | 2.6 | 0.003 | 0.57 | 0.0 | 0.04 | 16.98 | 0.00 | 2.123 | 5.53 | 3.77 | 4.8 | 94.8 | 0.4 | 0.11 | 0.32 | 0.65 | 0.87 | 3.79 | 30912 | 3928 | 16 | 0 | 32 | 0 | 0 | logfile |
✔ | 6KWX | 0780 | 2024-03-16 | 2019-09-09 | 3.75 | 4.07 | — | 4.0 | 0.011 | 1.55 | 1.0 | 0.17 | 13.54 | 0.01 | 1.627 | 13.84 | 1.69 | 9.0 | 90.6 | 0.3 | -4.69 | 0.68 | 0.72 | 1.40 | 4.0 | 0.003 | 0.86 | 0.0 | 0.05 | 17.25 | 0.00 | 2.176 | 15.91 | 3.45 | 7.5 | 92.4 | 0.1 | -0.61 | 1.45 | 0.69 | 0.80 | 1.08 | 14227 | 1751 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JVP | 22509 | 2024-03-11 | 2020-08-22 | 2.9 | 3.02 | — | 3.0 | 0.005 | 0.97 | 0.0 | 0.07 | 9.73 | 0.01 | 2.208 | 5.98 | 0.00 | 1.3 | 98.7 | 0.0 | 2.55 | 0.62 | 0.76 | 2.94 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.41 | 0.00 | 2.132 | 11.36 | 3.70 | 2.2 | 97.8 | 0.0 | 0.76 | 0.82 | 0.64 | 0.84 | 3.01 | 8486 | 1041 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7X1U | 32950 | 2024-03-11 | 2022-02-24 | 3.19 | 3.42 | — | 3.4 | 0.008 | 1.03 | 2.0 | 0.16 | 13.42 | 0.01 | 2.166 | 6.24 | 0.46 | 7.7 | 92.2 | 0.1 | -5.61 | 0.60 | 0.69 | 2.22 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 14.98 | 0.00 | 2.122 | 12.27 | 3.36 | 4.6 | 95.3 | 0.1 | -2.72 | 0.50 | 0.60 | 0.69 | 1.53 | 7483 | 1082 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VXM | 32184 | 2024-03-21 | 2021-11-12 | 3.6 | 3.96 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 7.69 | 0.00 | 2.159 | 7.97 | 0.00 | 3.9 | 95.9 | 0.2 | -2.41 | 0.49 | 0.54 | 0.82 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.37 | 0.00 | 1.526 | 13.41 | 1.87 | 3.1 | 96.9 | 0.0 | -0.01 | 1.67 | 0.58 | 0.73 | 1.19 | 29901 | 3791 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2024-03-11 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 5H1R | 9571 | 2024-03-25 | 2016-10-11 | 3.6 | 4.23 | — | 4.2 | 0.014 | 1.36 | 0.0 | 0.07 | 13.16 | 0.01 | 1.968 | 31.49 | 0.94 | 12.9 | 85.7 | 1.4 | -6.24 | 0.54 | 0.74 | 1.84 | 4.2 | 0.005 | 0.94 | 0.0 | 0.05 | 17.56 | 0.01 | 2.100 | 16.95 | 7.58 | 11.3 | 88.1 | 0.6 | -1.18 | 1.00 | 0.58 | 0.77 | 1.09 | 47440 | 5760 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6iJZ | 9682 | 2024-03-15 | 2018-10-12 | 3.68 | 3.76 | — | 3.7 | 0.008 | 1.11 | 0.0 | 0.06 | 10.64 | 0.01 | 2.000 | 4.54 | 0.69 | 10.9 | 88.8 | 0.3 | -5.03 | 0.57 | 0.80 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10964 | 1366 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VLU | 32027 | 2024-03-14 | 2021-10-05 | 3.3 | 3.71 | 3.36 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 13.04 | 0.00 | 1.978 | 3.76 | 1.96 | 2.5 | 97.5 | 0.0 | -0.35 | 0.71 | 0.84 | 2.31 | 3.6 | 0.003 | 0.56 | 0.0 | 0.04 | 14.68 | 0.00 | 1.954 | 6.80 | 2.06 | 1.7 | 98.3 | 0.0 | 2.58 | 1.91 | 0.62 | 0.80 | 1.43 | 9110 | 1159 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 7CYE | 30498 | 2024-03-11 | 2020-09-03 | 3.54 | 3.31 | — | 3.7 | 0.010 | 1.42 | 0.0 | 0.07 | 12.31 | 0.01 | 2.232 | 4.09 | 1.30 | 12.4 | 87.0 | 0.6 | -7.38 | 0.56 | 0.76 | 2.20 | 3.7 | 0.003 | 0.88 | 0.0 | 0.04 | 15.07 | 0.01 | 2.129 | 8.05 | 2.86 | 10.5 | 89.5 | 0.0 | -2.42 | 0.83 | 0.59 | 0.81 | 2.19 | 7263 | 978 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UXE | 26858 | 2024-03-14 | 2022-05-05 | 3.38 | 3.63 | 3.46 | 3.9 | 0.005 | 0.86 | 0.0 | 0.04 | 19.49 | 0.01 | 2.026 | 14.38 | 2.00 | 14.2 | 85.8 | 0.0 | -2.79 | 0.58 | 0.77 | 1.31 | 3.9 | 0.005 | 0.76 | 0.0 | 0.04 | 18.64 | 0.00 | 2.193 | 10.19 | 3.70 | 14.4 | 85.6 | 0.0 | -0.15 | 0.75 | 0.56 | 0.77 | 1.61 | 9480 | 1150 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J3Z | 9776 | 2024-03-16 | 2019-01-07 | 3.6 | 3.78 | — | 3.6 | 0.019 | 1.82 | 4.0 | 0.15 | 20.67 | 0.01 | 1.392 | 13.61 | 0.28 | 4.3 | 95.7 | 0.0 | -5.08 | 0.80 | 0.81 | 3.43 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 17.23 | 0.00 | 1.473 | 14.34 | 2.68 | 3.4 | 96.6 | 0.0 | -0.16 | 0.74 | 0.81 | 0.82 | 2.62 | 74619 | 6984 | 97 | 0 | 978 | 0 | 0 | logfile |
✔ | 7QD8 | 13910 | 2024-03-16 | 2021-11-26 | 3.6 | 3.90 | 3.66 | 3.8 | 0.004 | 0.74 | 0.0 | 0.05 | 14.49 | 0.00 | 2.273 | 5.28 | 0.00 | 2.3 | 97.7 | 0.0 | -1.83 | 0.74 | 0.69 | 1.54 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 16.24 | 0.00 | 2.173 | 9.97 | 2.12 | 3.0 | 97.0 | 0.0 | 0.42 | 0.47 | 0.74 | 0.69 | 1.15 | 14086 | 1730 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VLS | 32025 | 2024-03-14 | 2021-10-05 | 3.3 | 3.54 | 3.30 | 3.5 | 0.004 | 0.62 | 0.0 | 0.04 | 13.16 | 0.00 | 1.926 | 2.53 | 1.46 | 2.6 | 97.4 | 0.0 | -0.24 | 0.69 | 0.84 | 2.33 | 3.5 | 0.003 | 0.56 | 0.0 | 0.04 | 15.95 | 0.00 | 1.998 | 5.84 | 2.61 | 1.6 | 98.4 | 0.0 | 2.68 | 1.49 | 0.60 | 0.79 | 1.69 | 9003 | 1141 | 1 | 0 | 6 | 0 | 0 | logfile |
✔ | 6QoZ | 4610 | 2024-03-17 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.35 | 0.00 | 2.123 | 7.27 | 3.02 | 2.6 | 97.4 | 0.0 | -1.65 | 1.86 | 0.48 | 0.87 | 3.03 | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2024-03-15 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 24.00 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.94 | 0.0 | 0.05 | 16.97 | 0.01 | 2.125 | 15.51 | 3.61 | 11.4 | 87.9 | 0.8 | -1.21 | 1.76 | 0.54 | 0.77 | 1.51 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 6SHN | 10201 | 2024-03-19 | 2019-08-07 | 3.3 | 3.82 | — | 3.7 | 0.021 | 1.17 | 0.0 | 0.12 | 13.95 | 0.01 | 1.998 | 3.82 | 4.81 | 5.4 | 94.5 | 0.1 | -3.18 | 0.65 | 0.73 | 3.53 | 3.7 | 0.003 | 0.60 | 0.0 | 0.09 | 14.97 | 0.00 | 1.935 | 6.02 | 2.19 | 5.0 | 95.0 | 0.0 | -0.93 | 2.19 | 0.66 | 0.76 | 3.13 | 25339 | 1644 | 6 | 0 | 2 | 0 | 12513 | logfile |
✔ | 7CWo | 30485 | 2024-03-10 | 2020-08-29 | 3.9 | 4.25 | — | 4.1 | 0.007 | 1.04 | 0.0 | 0.06 | 9.37 | 0.01 | 2.262 | 9.56 | 0.28 | 8.4 | 91.6 | 0.0 | -3.72 | 0.58 | 0.74 | 2.31 | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 14.29 | 0.00 | 2.099 | 19.91 | 3.70 | 7.5 | 92.5 | 0.0 | -2.20 | 1.72 | 0.59 | 0.76 | 2.17 | 3254 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SHJ | 10199 | 2024-03-20 | 2019-08-07 | 3.2 | 3.72 | — | 3.7 | 0.010 | 1.04 | 6.0 | 0.07 | 14.70 | 0.01 | 2.114 | 4.81 | 3.58 | 7.0 | 92.9 | 0.1 | -4.39 | 0.49 | 0.56 | 2.91 | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.06 | 0.00 | 1.956 | 7.09 | 2.65 | 6.1 | 93.9 | 0.0 | -1.99 | 1.23 | 0.64 | 0.76 | 3.18 | 25934 | 1664 | 8 | 0 | 4 | 0 | 12832 | logfile |