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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XBW | 33107 | 2023-04-20 | 2022-03-22 | 2.8 | 3.01 | 2.74 | 3.1 | 0.005 | 0.54 | 0.0 | 0.04 | 11.71 | 0.00 | 2.251 | 6.45 | 0.00 | 2.6 | 97.4 | 0.0 | 1.47 | 0.60 | 0.72 | 2.24 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.13 | 0.00 | 2.096 | 10.82 | 2.27 | 2.4 | 97.6 | 0.0 | 0.64 | 1.57 | 0.58 | 0.76 | 2.44 | 6663 | 886 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6M68 | 30116 | 2023-04-23 | 2020-03-13 | 4.6 | 5.04 | — | 4.8 | 0.005 | 1.00 | 0.0 | 0.06 | 14.61 | 0.01 | 2.175 | 5.67 | 0.00 | 10.0 | 90.0 | 0.0 | -5.56 | 0.66 | 0.79 | — | 4.8 | 0.004 | 0.81 | 0.0 | 0.05 | 13.44 | 0.00 | 2.103 | 17.47 | 0.00 | 10.0 | 90.0 | 0.0 | -1.98 | 1.48 | 0.66 | 0.79 | — | 14938 | 1855 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X9C | 33071 | 2023-04-20 | 2022-03-15 | 3.0 | 3.24 | — | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 10.16 | 0.00 | 2.208 | 8.69 | 0.00 | 3.2 | 96.8 | 0.0 | -2.49 | 0.58 | 0.71 | 1.58 | 3.2 | 0.004 | 0.72 | 0.0 | 0.04 | 14.54 | 0.00 | 2.141 | 12.76 | 2.39 | 3.1 | 96.9 | 0.0 | -0.27 | 0.64 | 0.60 | 0.78 | 1.79 | 7219 | 945 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UZ2 | 20950 | 2023-04-20 | 2019-11-14 | 4.2 | 4.39 | — | 4.3 | 0.009 | 1.13 | 0.0 | 0.05 | 13.78 | 0.01 | 2.197 | 31.10 | 2.00 | 15.5 | 84.3 | 0.2 | -5.29 | 0.69 | 0.78 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 12.08 | 0.00 | 2.189 | 14.57 | 0.00 | 5.1 | 94.8 | 0.1 | 0.03 | 0.97 | 0.67 | 0.76 | — | 7392 | 1140 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YSN | 10903 | 2023-04-25 | 2020-04-22 | 3.0 | 3.17 | — | 3.2 | 0.006 | 0.71 | 0.0 | 0.04 | 13.66 | 0.00 | 2.202 | 5.58 | 0.19 | 5.9 | 94.1 | 0.0 | -4.49 | 0.62 | 0.81 | 3.17 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 16.91 | 0.00 | 2.147 | 5.88 | 1.99 | 3.8 | 96.2 | 0.0 | -0.53 | 1.25 | 0.70 | 0.86 | 2.74 | 19844 | 2424 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6oRQ | 20178 | 2023-04-25 | 2019-04-30 | 4.4 | 4.71 | 4.38 | 4.5 | 0.008 | 1.31 | 0.0 | 0.08 | 12.61 | 0.01 | 2.039 | 6.79 | 1.04 | 16.3 | 83.4 | 0.3 | -4.97 | 0.65 | 0.83 | — | 4.5 | 0.003 | 0.89 | 0.0 | 0.05 | 12.93 | 0.00 | 2.145 | 16.63 | 0.24 | 16.0 | 83.9 | 0.1 | -3.57 | 1.60 | 0.65 | 0.83 | — | 20176 | 2430 | 40 | 0 | 83 | 0 | 0 | logfile |
✔ | 7oW8 | 13095 | 2023-04-24 | 2021-06-17 | 3.5 | 3.84 | 3.56 | 3.8 | 0.011 | 1.61 | 24.0 | 0.10 | 16.66 | 0.01 | 1.983 | 10.45 | 4.22 | 6.3 | 93.6 | 0.2 | -3.90 | 0.60 | 0.74 | 1.82 | 3.9 | 0.004 | 0.71 | 0.0 | 0.04 | 17.52 | 0.00 | 1.790 | 10.73 | 0.21 | 5.3 | 94.6 | 0.1 | -0.35 | 0.62 | 0.66 | 0.78 | 1.87 | 8942 | 1154 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RSN | 24675 | 2023-04-25 | 2021-08-11 | 3.49 | 3.85 | 3.57 | 3.9 | 0.023 | 1.84 | 3.0 | 0.14 | 10.53 | 0.01 | 2.296 | 0.46 | 0.00 | 4.0 | 95.6 | 0.4 | 0.48 | 0.73 | 0.82 | 2.83 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 15.16 | 0.00 | 2.107 | 9.36 | 0.30 | 6.2 | 93.5 | 0.3 | -0.48 | 1.61 | 0.69 | 0.83 | 2.12 | 19623 | 2310 | 33 | 0 | 99 | 0 | 0 | logfile |
✔ | 7FiG | 31596 | 2023-04-23 | 2021-07-31 | 3.9 | 4.18 | — | 4.1 | 0.007 | 1.11 | 0.0 | 0.06 | 13.42 | 0.01 | 2.011 | 3.48 | 0.00 | 5.3 | 94.7 | 0.0 | -2.06 | 0.65 | 0.76 | 1.78 | 4.1 | 0.003 | 0.87 | 0.0 | 0.05 | 16.53 | 0.00 | 2.108 | 16.17 | 0.78 | 3.5 | 96.5 | 0.0 | -0.31 | 2.51 | 0.68 | 0.79 | 1.10 | 12839 | 1632 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 7Y9U | 33692 | 2023-04-20 | 2022-06-26 | 3.3 | 3.48 | 3.23 | 3.5 | 0.011 | 1.27 | 2.0 | 0.06 | 9.98 | 0.01 | 2.311 | 3.19 | 0.00 | 5.3 | 94.7 | 0.0 | -6.23 | 0.60 | 0.84 | 3.22 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 13.73 | 0.00 | 2.158 | 4.60 | 0.24 | 3.6 | 96.4 | 0.0 | -1.82 | 0.62 | 0.59 | 0.84 | 2.56 | 7748 | 988 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7LMS | 23441 | 2023-04-20 | 2021-02-05 | 3.5 | 4.13 | 3.61 | 4.0 | 0.019 | 1.52 | 0.0 | 0.09 | 10.07 | 0.01 | 2.432 | 0.41 | 0.00 | 0.2 | 99.8 | 0.0 | 0.57 | 0.81 | 0.83 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4947 | 613 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7S06 | 24785 | 2023-04-20 | 2021-08-30 | 3.3 | 3.59 | 3.40 | 3.6 | 0.004 | 0.66 | 0.0 | 0.05 | 15.06 | 0.00 | 2.199 | 7.68 | 0.00 | 6.2 | 93.8 | 0.0 | 0.97 | 0.65 | 0.78 | 2.56 | 3.6 | 0.003 | 0.64 | 0.0 | 0.05 | 17.38 | 0.00 | 2.229 | 7.74 | 0.46 | 5.9 | 94.1 | 0.0 | 0.92 | 1.07 | 0.69 | 0.83 | 2.34 | 7862 | 918 | 8 | 0 | 14 | 0 | 0 | logfile |
✘ | 7YJ4 | 33871 | 2023-04-21 | 2022-07-19 | 3.19 | 3.39 | 3.21 | 3.4 | 0.004 | 0.67 | 0.0 | 0.05 | 14.73 | 0.01 | 2.175 | 9.63 | 1.55 | 5.5 | 94.4 | 0.1 | -0.72 | 0.60 | 0.73 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8985 | 1154 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SAU | 24957 | 2023-04-20 | 2021-09-23 | 3.0 | 2.41 | 2.77 | 2.7 | 0.005 | 0.61 | 0.0 | 0.04 | 13.77 | 0.01 | 2.122 | 6.13 | 0.15 | 5.1 | 94.9 | 0.0 | 0.64 | 0.61 | 0.84 | 3.01 | 2.7 | 0.003 | 0.55 | 0.0 | 0.04 | 17.55 | 0.00 | 2.131 | 7.16 | 1.21 | 4.5 | 95.5 | 0.0 | 2.39 | 0.54 | 0.60 | 0.84 | 2.26 | 6317 | 791 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6URG | 20860 | 2023-04-22 | 2019-10-23 | 3.0 | 3.18 | — | 3.2 | 0.005 | 0.92 | 2.0 | 0.06 | 9.75 | 0.01 | 1.874 | 8.12 | 0.69 | 7.9 | 91.9 | 0.2 | -3.82 | 0.75 | 0.79 | 3.96 | 3.2 | 0.004 | 0.70 | 0.0 | 0.05 | 16.05 | 0.00 | 2.150 | 9.86 | 3.18 | 7.4 | 92.5 | 0.1 | -1.51 | 1.68 | 0.74 | 0.86 | 3.29 | 13214 | 1660 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5oYG | 3861 | 2023-04-22 | 2017-09-08 | 4.06 | 4.29 | 4.02 | 4.1 | 0.007 | 1.27 | 10.0 | 0.10 | 12.53 | 0.01 | 2.282 | 5.95 | 1.98 | 6.9 | 93.1 | 0.0 | -3.35 | 0.68 | 0.83 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.04 | 12.60 | 0.00 | 2.130 | 11.47 | 0.00 | 6.0 | 94.0 | 0.0 | 0.56 | 0.84 | 0.68 | 0.82 | — | 11596 | 1418 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q3Y | 13797 | 2023-04-25 | 2021-10-29 | 4.34 | 4.62 | 4.39 | 4.4 | 0.007 | 0.90 | 0.0 | 0.05 | 13.63 | 0.01 | 1.969 | 5.69 | 0.19 | 3.2 | 96.8 | 0.0 | -1.33 | 0.84 | 0.78 | — | 4.4 | 0.004 | 0.61 | 0.0 | 0.04 | 13.84 | 0.00 | 1.445 | 10.99 | 0.10 | 4.1 | 95.9 | 0.0 | 1.21 | 1.39 | 0.84 | 0.78 | — | 19627 | 1201 | 11 | 0 | 37 | 1 | 9386 | logfile |
✔ | 7CKR | 30391 | 2023-04-20 | 2020-07-18 | 3.0 | 3.32 | — | 3.4 | 0.009 | 1.22 | 9.0 | 0.09 | 17.22 | 0.01 | 1.896 | 18.09 | 11.04 | 8.0 | 91.9 | 0.2 | -2.89 | 0.45 | 0.60 | 2.22 | 3.3 | 0.003 | 0.78 | 0.0 | 0.05 | 17.05 | 0.01 | 2.178 | 14.60 | 3.58 | 4.1 | 95.9 | 0.0 | 0.75 | 1.85 | 0.53 | 0.73 | 1.92 | 4094 | 597 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7ADK | 11729 | 2023-04-25 | 2020-09-15 | 2.8 | 3.03 | 2.81 | 3.0 | 0.014 | 2.03 | 21.0 | 0.12 | 15.24 | 0.02 | 0.997 | 1.77 | 0.43 | 9.4 | 90.6 | 0.0 | -2.46 | 0.47 | 0.68 | 3.61 | 3.0 | 0.003 | 0.67 | 0.0 | 0.04 | 17.37 | 0.00 | 1.872 | 9.59 | 2.94 | 8.2 | 91.8 | 0.0 | -1.87 | 2.91 | 0.56 | 0.76 | 2.72 | 20869 | 1317 | 2 | 0 | 0 | 0 | 10260 | logfile |
✔ | 6D83 | 7453 | 2023-04-24 | 2018-04-25 | 4.27 | 4.38 | — | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 11.34 | 0.01 | 1.904 | 6.11 | 0.05 | 5.0 | 94.9 | 0.0 | -4.30 | 0.80 | 0.76 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 13.93 | 0.00 | 1.983 | 16.08 | 0.05 | 4.2 | 95.8 | 0.0 | -0.81 | 1.07 | 0.81 | 0.77 | — | 16588 | 2063 | 10 | 0 | 4 | 0 | 0 | logfile |