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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7JPN | 22416 | 2024-03-16 | 2020-08-09 | 3.24 | 2.33 | 3.25 | 2.1 | 0.004 | 0.63 | 2.0 | 0.05 | 14.75 | 0.00 | 1.919 | 11.50 | 0.55 | 4.1 | 95.9 | 0.0 | 0.43 | 0.76 | 0.77 | 3.05 | 2.1 | 0.004 | 0.58 | 0.0 | 0.04 | 16.56 | 0.00 | 1.853 | 11.24 | 1.72 | 3.5 | 96.5 | 0.0 | 0.64 | 0.91 | 0.78 | 0.81 | 2.48 | 15040 | 1885 | 10 | 0 | 4 | 0 | 0 | logfile |
✘ | 7Y5T | 33624 | 2024-03-15 | 2022-06-17 | 2.9 | 2.28 | 2.95 | 3.0 | 0.007 | 1.02 | 0.0 | 0.19 | 14.01 | 0.01 | 2.265 | 3.95 | 0.18 | 5.1 | 94.9 | 0.0 | -3.37 | 0.64 | 0.84 | 4.18 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10844 | 1314 | 13 | 0 | 27 | 0 | 0 | logfile |
✔ | 7V7E | 31768 | 2024-03-19 | 2021-08-21 | 2.9 | 3.84 | — | 3.2 | 0.004 | 0.62 | 0.0 | 0.05 | 14.06 | 0.00 | 2.106 | 7.79 | 0.00 | 5.0 | 95.0 | 0.1 | -0.18 | 0.87 | 0.84 | 2.51 | 3.2 | 0.004 | 0.59 | 0.0 | 0.05 | 14.18 | 0.00 | 2.171 | 8.39 | 1.40 | 5.1 | 94.8 | 0.1 | -0.06 | 1.14 | 0.87 | 0.85 | 2.04 | 25340 | 3093 | 40 | 0 | 82 | 0 | 0 | logfile |
✔ | 7BAo | 12126 | 2024-03-16 | 2020-12-16 | 2.7 | 2.98 | — | 2.9 | 0.011 | 1.00 | 0.0 | 0.06 | 13.01 | 0.01 | 2.075 | 8.24 | 0.06 | 5.9 | 94.1 | 0.0 | -1.77 | 0.77 | 0.88 | 4.68 | 2.9 | 0.003 | 0.66 | 0.0 | 0.05 | 15.28 | 0.00 | 2.209 | 5.43 | 1.92 | 5.0 | 95.0 | 0.0 | -0.11 | 3.40 | 0.78 | 0.90 | 3.94 | 15306 | 1904 | 6 | 0 | 18 | 0 | 0 | logfile |
✔ | 7KDE | 22820 | 2024-03-19 | 2020-10-08 | 3.55 | 3.68 | — | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 17.74 | 0.01 | 2.097 | 9.71 | 0.00 | 12.5 | 87.1 | 0.4 | -3.58 | 0.73 | 0.86 | 3.16 | 3.6 | 0.003 | 0.72 | 0.0 | 0.05 | 14.96 | 0.00 | 2.081 | 8.20 | 2.96 | 7.7 | 92.0 | 0.3 | -2.24 | 0.39 | 0.72 | 0.85 | 2.29 | 25487 | 3069 | 48 | 0 | 134 | 0 | 0 | logfile |
✔ | 7V7C | 31766 | 2024-03-24 | 2021-08-21 | 3.7 | 2.55 | — | 2.0 | 0.005 | 0.86 | 0.0 | 0.05 | 9.60 | 0.01 | 2.268 | 5.66 | 0.09 | 9.0 | 91.0 | 0.0 | -4.75 | 0.68 | 0.69 | 1.95 | 2.0 | 0.003 | 0.72 | 0.0 | 0.05 | 14.35 | 0.00 | 2.157 | 13.26 | 1.77 | 7.8 | 92.2 | 0.0 | -2.04 | 1.30 | 0.69 | 0.68 | 1.35 | 40264 | 5084 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GS6 | 34221 | 2024-03-19 | 2022-09-05 | 2.86 | 3.44 | 2.87 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 14.84 | 0.00 | 2.140 | 6.25 | 0.00 | 4.4 | 95.6 | 0.0 | -0.45 | 0.83 | 0.84 | 2.81 | 3.3 | 0.004 | 0.62 | 0.0 | 0.05 | 15.65 | 0.00 | 2.141 | 6.31 | 1.50 | 5.1 | 94.9 | 0.0 | -0.32 | 0.32 | 0.84 | 0.85 | 2.69 | 24538 | 3058 | 11 | 0 | 41 | 0 | 0 | logfile |
✔ | 6U5F | 20644 | 2024-03-10 | 2019-08-27 | 3.8 | 3.74 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.06 | 10.02 | 0.01 | 2.238 | 6.14 | 0.38 | 11.0 | 89.0 | 0.0 | -5.43 | 0.61 | 0.81 | 3.06 | 3.7 | 0.004 | 0.78 | 2.0 | 0.05 | 15.28 | 0.00 | 1.864 | 12.81 | 3.93 | 9.8 | 90.2 | 0.0 | -2.58 | 0.67 | 0.62 | 0.82 | 2.58 | 107550 | 14232 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 7T94 | 25751 | 2024-03-15 | 2021-12-17 | 3.16 | 2.39 | — | 2.1 | 0.007 | 0.93 | 2.0 | 0.06 | 12.23 | 0.00 | 2.081 | 8.29 | 0.12 | 5.3 | 94.7 | 0.0 | -0.68 | 0.77 | 0.77 | 3.26 | 2.1 | 0.003 | 0.63 | 0.0 | 0.04 | 14.90 | 0.00 | 2.149 | 7.62 | 3.94 | 5.3 | 94.7 | 0.0 | -0.04 | 0.96 | 0.78 | 0.80 | 2.87 | 8388 | 1113 | 6 | 0 | 2 | 1 | 0 | logfile |
✘ | 7M5X | 23684 | 2024-03-17 | 2021-03-25 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15476 | 1000 | 1 | 0 | 25 | 11 | 7545 | logfile |
✔ | 3JAU | 6366 | 2024-03-12 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.71 | 0.0 | 0.04 | 13.37 | 0.00 | 2.144 | 19.50 | 0.00 | 3.7 | 95.9 | 0.4 | -0.66 | 1.39 | 0.24 | 0.60 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QXW | 14204 | 2024-03-21 | 2022-01-27 | 4.1 | 4.60 | — | 4.4 | 0.004 | 0.82 | 7.0 | 0.04 | 10.46 | 0.00 | 1.367 | 50.97 | 1.03 | 10.8 | 88.8 | 0.3 | -4.29 | 0.81 | 0.75 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 12.51 | 0.00 | 1.873 | 19.12 | 0.05 | 8.9 | 91.0 | 0.1 | -1.30 | 1.65 | 0.83 | 0.81 | — | 103867 | 13346 | 53 | 0 | 9 | 0 | 0 | logfile |
✔ | 7V7R | 31779 | 2024-03-19 | 2021-08-21 | 2.9 | 3.74 | — | 3.2 | 0.004 | 0.61 | 0.0 | 0.05 | 13.57 | 0.00 | 2.163 | 6.28 | 0.00 | 4.5 | 95.4 | 0.1 | 0.06 | 0.89 | 0.87 | 2.64 | 3.2 | 0.002 | 0.57 | 0.0 | 0.04 | 14.02 | 0.00 | 2.154 | 6.02 | 0.92 | 3.9 | 96.0 | 0.1 | 0.30 | 0.28 | 0.89 | 0.88 | 2.07 | 25362 | 3095 | 42 | 0 | 84 | 0 | 0 | logfile |
✔ | 6PLW | 20378 | 2024-03-16 | 2019-07-01 | 3.0 | 3.83 | — | 3.5 | 0.010 | 1.02 | 0.0 | 0.06 | 13.32 | 0.01 | 2.276 | 5.10 | 0.00 | 3.5 | 96.5 | 0.0 | -4.80 | 0.76 | 0.88 | 4.48 | 3.5 | 0.002 | 0.69 | 0.0 | 0.04 | 13.77 | 0.00 | 2.138 | 10.73 | 2.32 | 3.0 | 97.0 | 0.0 | -0.36 | 0.73 | 0.74 | 0.87 | 3.69 | 14095 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 7PNQ | 13550 | 2024-03-22 | 2021-09-07 | 3.7 | 2.74 | 3.64 | 3.5 | 0.003 | 0.64 | 0.0 | 0.05 | 13.23 | 0.01 | 2.308 | 2.92 | 0.03 | 3.0 | 96.9 | 0.1 | -1.49 | 0.64 | 0.56 | 1.31 | 2.1 | 0.003 | 0.75 | 0.0 | 0.05 | 14.90 | 0.00 | 2.040 | 14.84 | 2.25 | 4.7 | 95.3 | 0.0 | -0.79 | 1.39 | 0.67 | 0.65 | 1.51 | 32925 | 4218 | 12 | 0 | 15 | 0 | 0 | logfile |
✔ | 7TW1 | 26147 | 2024-03-19 | 2022-02-06 | 4.6 | 3.99 | — | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 13.82 | 0.00 | 2.117 | 7.55 | 0.08 | 2.5 | 97.5 | 0.0 | -0.20 | 0.75 | 0.78 | — | 3.7 | 0.005 | 0.71 | 0.0 | 0.04 | 14.02 | 0.00 | 2.104 | 15.31 | 0.00 | 5.1 | 94.9 | 0.0 | -0.47 | 1.17 | 0.75 | 0.79 | — | 23625 | 2993 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7L8S | 23235 | 2024-03-16 | 2020-12-31 | 4.3 | 4.42 | 4.07 | 4.3 | 0.022 | 1.74 | 3.0 | 0.15 | 11.45 | 0.01 | 2.287 | 1.20 | 0.00 | 1.3 | 98.7 | 0.0 | 1.27 | 0.78 | 0.80 | — | 4.3 | 0.003 | 0.68 | 0.0 | 0.04 | 11.37 | 0.00 | 2.244 | 10.48 | 0.20 | 3.1 | 96.9 | 0.0 | -0.03 | 0.93 | 0.78 | 0.82 | — | 16057 | 1713 | 42 | 0 | 315 | 0 | 0 | logfile |
✔ | 7DSi | 30834 | 2024-03-15 | 2020-12-31 | 3.21 | 3.61 | — | 3.5 | 0.006 | 1.05 | 0.0 | 0.06 | 14.17 | 0.01 | 2.215 | 5.08 | 0.15 | 8.3 | 91.7 | 0.1 | -5.64 | 0.75 | 0.79 | 3.66 | 3.5 | 0.005 | 0.72 | 0.0 | 0.05 | 14.26 | 0.00 | 2.116 | 10.44 | 1.91 | 7.9 | 92.1 | 0.1 | -2.40 | 0.57 | 0.73 | 0.84 | 2.62 | 12185 | 1507 | 6 | 0 | 9 | 0 | 0 | logfile |
✘ | 7UK4 | 26574 | 2024-03-16 | 2022-03-31 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14487 | 1856 | 6 | 0 | 2 | 390 | 0 | logfile |
✔ | 7RFE | 24439 | 2024-03-11 | 2021-07-14 | 2.6 | 2.27 | — | 2.5 | 0.013 | 2.07 | 13.0 | 0.10 | 20.13 | 0.02 | 2.500 | 1.13 | 2.87 | 3.5 | 96.2 | 0.2 | -0.73 | 0.60 | 0.78 | 5.31 | 2.5 | 0.004 | 0.66 | 0.0 | 0.04 | 18.83 | 0.00 | 1.876 | 6.28 | 1.83 | 3.1 | 96.9 | 0.0 | 0.79 | 0.65 | 0.63 | 0.82 | 4.45 | 58720 | 3800 | 16 | 0 | 32 | 0 | 29200 | logfile |