Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MTQ	23994	2023-09-30	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	13.71	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.004	0.64	0.0	0.04	14.29	0.00	2.143	9.17	0.56	3.8	96.2	0.0	-0.23	0.44	0.72	0.75	1.93	10388	1486	4	0	4	0	0	logfile
✔	6ZXN	11526	2023-09-28	2020-07-30	2.93	3.41	—	3.3	0.004	0.56	0.0	0.05	12.73	0.00	1.940	7.08	0.10	4.5	95.5	0.0	-0.46	0.54	0.73	2.84	3.3	0.004	0.55	0.0	0.04	14.62	0.00	1.903	8.60	0.78	4.8	95.2	0.0	-0.32	1.11	0.51	0.72	2.85	55098	3522	21	0	63	0	26763	logfile
✔	8D8o	27253	2023-09-30	2022-06-08	3.35	3.59	3.32	3.5	0.004	0.57	0.0	0.04	15.92	0.01	2.133	7.67	0.16	5.9	94.1	0.0	-0.78	0.73	0.82	2.46	3.5	0.003	0.54	0.0	0.04	16.20	0.00	2.200	7.23	0.23	5.2	94.8	0.0	-0.60	0.27	0.73	0.82	2.29	11819	1536	2	0	1	0	0	logfile
✔	7oZo	13130	2023-09-28	2021-06-28	3.8	4.06	3.82	3.9	0.002	0.39	0.0	0.04	14.07	0.00	1.993	4.62	0.00	2.1	97.9	0.0	1.21	0.79	0.71	0.70	3.9	0.004	0.73	0.0	0.05	16.69	0.00	2.132	16.59	0.40	3.6	96.4	0.0	-0.29	1.27	0.82	0.78	0.99	54330	6774	32	0	10	0	0	logfile
✔	6XHi	22186	2023-09-29	2020-06-18	4.19	4.70	—	4.5	0.013	1.51	0.0	0.08	14.97	0.01	2.283	2.42	0.00	2.6	97.4	0.0	-1.57	0.85	0.81	—	4.5	0.003	0.68	0.0	0.04	13.37	0.00	2.126	8.13	0.00	2.9	97.1	0.0	1.39	1.65	0.84	0.81	—	58554	8514	18	0	18	0	0	logfile
✔	8BER	16009	2023-09-27	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.65	0.0	0.04	14.34	0.00	2.180	13.84	0.55	5.2	94.8	0.0	2.91	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✘	7oTo	13063	2023-09-30	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✘	7PHP	13424	2023-09-29	2021-08-18	3.47	3.48	—	3.6	0.017	0.90	0.0	0.05	14.25	0.01	2.182	6.60	0.11	7.0	93.0	0.0	-1.50	0.72	0.83	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1134	8	0	0	21	0	logfile
✔	5MS1	3562	2023-09-27	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.79	0.00	2.136	9.78	0.00	2.9	97.1	0.0	-0.39	1.54	0.46	0.85	—	4350	556	2	0	0	0	0	logfile
✘	7YS6	34073	2023-09-29	2022-08-11	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8794	1129	6	0	1	0	0	logfile
✔	8AVX	15686	2023-09-28	2022-08-27	3.5	3.71	3.49	3.7	0.008	1.38	0.0	0.08	17.79	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.6	0.003	0.73	0.0	0.04	17.86	0.00	2.183	9.87	0.40	3.7	96.3	0.0	-0.65	1.50	0.71	0.68	1.09	7427	961	4	0	2	0	0	logfile
✔	7RU4	24696	2023-09-27	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.85	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.003	0.75	0.0	0.05	15.37	0.00	2.181	10.06	0.27	6.0	94.0	0.0	-0.88	1.41	0.76	0.82	2.84	3382	428	5	0	4	0	0	logfile
✘	7PiJ	13438	2023-09-28	2021-08-20	3.78	4.14	—	4.1	0.015	1.17	0.0	0.05	13.54	0.01	1.166	13.45	0.11	10.6	89.3	0.1	-3.26	0.50	0.53	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8194	1068	8	0	0	16	0	logfile
✔	7oZP	13131	2023-09-28	2021-06-28	3.8	4.17	3.83	4.0	0.002	0.39	0.0	0.04	14.04	0.00	1.969	4.71	0.00	2.1	97.9	0.0	1.24	0.79	0.71	0.86	4.0	0.004	0.71	0.0	0.05	16.72	0.00	2.095	15.96	0.33	3.8	96.2	0.0	0.23	0.98	0.83	0.79	1.29	54330	6774	32	0	10	0	0	logfile
✔	8Eio	28160	2023-09-29	2022-09-15	2.8	2.72	2.98	3.0	0.006	1.05	0.0	0.04	11.52	0.01	1.991	1.09	1.09	1.0	99.0	0.1	-0.27	0.68	0.86	4.04	3.0	0.004	0.58	0.0	0.04	16.09	0.00	2.009	4.00	2.17	2.3	97.7	0.0	1.06	1.63	0.69	0.87	3.06	9550	1162	3	0	25	0	0	logfile
✔	7T01	25574	2023-09-27	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.004	0.99	0.0	0.05	16.01	0.01	2.225	16.10	2.41	5.2	94.8	0.0	-1.57	1.11	0.72	0.85	3.47	3343	428	3	0	0	0	0	logfile
✔	8A8C	15229	2023-09-29	2022-06-22	3.1	3.35	3.12	3.4	0.007	0.68	0.0	0.04	18.09	0.01	2.201	14.74	0.80	5.9	93.9	0.2	-1.68	0.70	0.86	3.26	3.4	0.007	0.68	0.0	0.05	17.16	0.00	2.183	16.63	0.70	6.8	93.0	0.2	-1.98	0.25	0.69	0.87	3.37	9544	1224	3	0	1	0	0	logfile
✔	7Y7K	33668	2023-09-27	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile
✔	6YJ5	10816	2023-09-27	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7XWo	33497	2023-09-29	2022-05-26	2.7	2.15	2.94	1.9	0.007	0.87	0.0	0.06	13.89	0.01	2.275	4.65	0.22	5.7	94.3	0.0	-4.88	0.76	0.76	3.57	2.0	0.002	0.64	0.0	0.04	15.98	0.00	2.057	10.75	3.16	3.0	97.0	0.0	-0.86	0.46	0.77	0.78	2.53	8725	1131	6	0	0	0	0	logfile

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