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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7MTQ | 23994 | 2023-09-30 | 2021-05-13 | 3.65 | 2.61 | — | 2.2 | 0.011 | 0.88 | 1.0 | 0.05 | 13.71 | 0.01 | 2.205 | 8.45 | 0.56 | 3.2 | 96.8 | 0.0 | 0.26 | 0.70 | 0.73 | 2.03 | 2.2 | 0.004 | 0.64 | 0.0 | 0.04 | 14.29 | 0.00 | 2.143 | 9.17 | 0.56 | 3.8 | 96.2 | 0.0 | -0.23 | 0.44 | 0.72 | 0.75 | 1.93 | 10388 | 1486 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6ZXN | 11526 | 2023-09-28 | 2020-07-30 | 2.93 | 3.41 | — | 3.3 | 0.004 | 0.56 | 0.0 | 0.05 | 12.73 | 0.00 | 1.940 | 7.08 | 0.10 | 4.5 | 95.5 | 0.0 | -0.46 | 0.54 | 0.73 | 2.84 | 3.3 | 0.004 | 0.55 | 0.0 | 0.04 | 14.62 | 0.00 | 1.903 | 8.60 | 0.78 | 4.8 | 95.2 | 0.0 | -0.32 | 1.11 | 0.51 | 0.72 | 2.85 | 55098 | 3522 | 21 | 0 | 63 | 0 | 26763 | logfile |
✔ | 8D8o | 27253 | 2023-09-30 | 2022-06-08 | 3.35 | 3.59 | 3.32 | 3.5 | 0.004 | 0.57 | 0.0 | 0.04 | 15.92 | 0.01 | 2.133 | 7.67 | 0.16 | 5.9 | 94.1 | 0.0 | -0.78 | 0.73 | 0.82 | 2.46 | 3.5 | 0.003 | 0.54 | 0.0 | 0.04 | 16.20 | 0.00 | 2.200 | 7.23 | 0.23 | 5.2 | 94.8 | 0.0 | -0.60 | 0.27 | 0.73 | 0.82 | 2.29 | 11819 | 1536 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 7oZo | 13130 | 2023-09-28 | 2021-06-28 | 3.8 | 4.06 | 3.82 | 3.9 | 0.002 | 0.39 | 0.0 | 0.04 | 14.07 | 0.00 | 1.993 | 4.62 | 0.00 | 2.1 | 97.9 | 0.0 | 1.21 | 0.79 | 0.71 | 0.70 | 3.9 | 0.004 | 0.73 | 0.0 | 0.05 | 16.69 | 0.00 | 2.132 | 16.59 | 0.40 | 3.6 | 96.4 | 0.0 | -0.29 | 1.27 | 0.82 | 0.78 | 0.99 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 6XHi | 22186 | 2023-09-29 | 2020-06-18 | 4.19 | 4.70 | — | 4.5 | 0.013 | 1.51 | 0.0 | 0.08 | 14.97 | 0.01 | 2.283 | 2.42 | 0.00 | 2.6 | 97.4 | 0.0 | -1.57 | 0.85 | 0.81 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 13.37 | 0.00 | 2.126 | 8.13 | 0.00 | 2.9 | 97.1 | 0.0 | 1.39 | 1.65 | 0.84 | 0.81 | — | 58554 | 8514 | 18 | 0 | 18 | 0 | 0 | logfile |
✔ | 8BER | 16009 | 2023-09-27 | 2022-10-21 | 4.0 | 4.97 | 1.55 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 12.68 | 0.00 | 2.214 | 12.92 | 0.00 | 4.0 | 96.0 | 0.0 | 2.47 | 0.55 | 0.79 | — | 3.8 | 0.003 | 0.65 | 0.0 | 0.04 | 14.34 | 0.00 | 2.180 | 13.84 | 0.55 | 5.2 | 94.8 | 0.0 | 2.91 | 1.18 | 0.54 | 0.81 | — | 3309 | 414 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oTo | 13063 | 2023-09-30 | 2021-06-10 | 3.4 | 2.27 | — | 1.3 | 0.013 | 1.84 | 0.0 | 0.11 | 15.17 | 0.01 | 1.799 | 3.86 | 0.00 | 1.5 | 98.5 | 0.0 | 2.59 | 0.76 | 0.74 | 1.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10333 | 1313 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 7PHP | 13424 | 2023-09-29 | 2021-08-18 | 3.47 | 3.48 | — | 3.6 | 0.017 | 0.90 | 0.0 | 0.05 | 14.25 | 0.01 | 2.182 | 6.60 | 0.11 | 7.0 | 93.0 | 0.0 | -1.50 | 0.72 | 0.83 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8647 | 1134 | 8 | 0 | 0 | 21 | 0 | logfile |
✔ | 5MS1 | 3562 | 2023-09-27 | 2016-12-29 | 4.25 | 4.22 | — | 4.2 | 0.014 | 1.51 | 0.0 | 0.07 | 9.30 | 0.01 | 2.413 | 2.10 | 0.00 | 5.5 | 93.5 | 1.1 | -0.81 | 0.37 | 0.76 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 12.79 | 0.00 | 2.136 | 9.78 | 0.00 | 2.9 | 97.1 | 0.0 | -0.39 | 1.54 | 0.46 | 0.85 | — | 4350 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YS6 | 34073 | 2023-09-29 | 2022-08-11 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8794 | 1129 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 8AVX | 15686 | 2023-09-28 | 2022-08-27 | 3.5 | 3.71 | 3.49 | 3.7 | 0.008 | 1.38 | 0.0 | 0.08 | 17.79 | 0.01 | 2.316 | 1.69 | 4.23 | 4.5 | 95.2 | 0.2 | -4.05 | 0.69 | 0.67 | 0.44 | 3.6 | 0.003 | 0.73 | 0.0 | 0.04 | 17.86 | 0.00 | 2.183 | 9.87 | 0.40 | 3.7 | 96.3 | 0.0 | -0.65 | 1.50 | 0.71 | 0.68 | 1.09 | 7427 | 961 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RU4 | 24696 | 2023-09-27 | 2021-08-16 | 3.3 | 3.64 | 3.27 | 3.4 | 0.023 | 1.89 | 0.0 | 0.11 | 9.85 | 0.01 | 2.362 | 0.60 | 0.55 | 3.1 | 96.9 | 0.0 | 0.06 | 0.75 | 0.80 | 3.98 | 3.4 | 0.003 | 0.75 | 0.0 | 0.05 | 15.37 | 0.00 | 2.181 | 10.06 | 0.27 | 6.0 | 94.0 | 0.0 | -0.88 | 1.41 | 0.76 | 0.82 | 2.84 | 3382 | 428 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 7PiJ | 13438 | 2023-09-28 | 2021-08-20 | 3.78 | 4.14 | — | 4.1 | 0.015 | 1.17 | 0.0 | 0.05 | 13.54 | 0.01 | 1.166 | 13.45 | 0.11 | 10.6 | 89.3 | 0.1 | -3.26 | 0.50 | 0.53 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8194 | 1068 | 8 | 0 | 0 | 16 | 0 | logfile |
✔ | 7oZP | 13131 | 2023-09-28 | 2021-06-28 | 3.8 | 4.17 | 3.83 | 4.0 | 0.002 | 0.39 | 0.0 | 0.04 | 14.04 | 0.00 | 1.969 | 4.71 | 0.00 | 2.1 | 97.9 | 0.0 | 1.24 | 0.79 | 0.71 | 0.86 | 4.0 | 0.004 | 0.71 | 0.0 | 0.05 | 16.72 | 0.00 | 2.095 | 15.96 | 0.33 | 3.8 | 96.2 | 0.0 | 0.23 | 0.98 | 0.83 | 0.79 | 1.29 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 8Eio | 28160 | 2023-09-29 | 2022-09-15 | 2.8 | 2.72 | 2.98 | 3.0 | 0.006 | 1.05 | 0.0 | 0.04 | 11.52 | 0.01 | 1.991 | 1.09 | 1.09 | 1.0 | 99.0 | 0.1 | -0.27 | 0.68 | 0.86 | 4.04 | 3.0 | 0.004 | 0.58 | 0.0 | 0.04 | 16.09 | 0.00 | 2.009 | 4.00 | 2.17 | 2.3 | 97.7 | 0.0 | 1.06 | 1.63 | 0.69 | 0.87 | 3.06 | 9550 | 1162 | 3 | 0 | 25 | 0 | 0 | logfile |
✔ | 7T01 | 25574 | 2023-09-27 | 2021-11-29 | 2.69 | 2.92 | 2.50 | 3.2 | 0.004 | 0.87 | 0.0 | 0.05 | 12.30 | 0.01 | 2.335 | 1.37 | 0.00 | 3.8 | 96.2 | 0.0 | -1.08 | 0.71 | 0.83 | 4.37 | 3.2 | 0.004 | 0.99 | 0.0 | 0.05 | 16.01 | 0.01 | 2.225 | 16.10 | 2.41 | 5.2 | 94.8 | 0.0 | -1.57 | 1.11 | 0.72 | 0.85 | 3.47 | 3343 | 428 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A8C | 15229 | 2023-09-29 | 2022-06-22 | 3.1 | 3.35 | 3.12 | 3.4 | 0.007 | 0.68 | 0.0 | 0.04 | 18.09 | 0.01 | 2.201 | 14.74 | 0.80 | 5.9 | 93.9 | 0.2 | -1.68 | 0.70 | 0.86 | 3.26 | 3.4 | 0.007 | 0.68 | 0.0 | 0.05 | 17.16 | 0.00 | 2.183 | 16.63 | 0.70 | 6.8 | 93.0 | 0.2 | -1.98 | 0.25 | 0.69 | 0.87 | 3.37 | 9544 | 1224 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7Y7K | 33668 | 2023-09-27 | 2022-06-22 | 4.4 | 4.96 | 5.46 | 4.3 | 0.010 | 1.63 | 0.0 | 0.07 | 13.11 | 0.01 | 2.215 | 33.93 | 3.90 | 10.3 | 86.1 | 3.6 | -2.50 | 0.71 | 0.63 | — | 4.3 | 0.003 | 0.73 | 0.0 | 0.04 | 11.34 | 0.00 | 2.127 | 13.54 | 0.35 | 6.0 | 93.8 | 0.2 | -1.28 | 1.66 | 0.73 | 0.67 | — | 2942 | 422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YJ5 | 10816 | 2023-09-27 | 2020-04-02 | 3.5 | 2.92 | 3.56 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 13.19 | 0.01 | 2.183 | 4.22 | 0.00 | 12.5 | 87.5 | 0.0 | -5.13 | 0.42 | 0.62 | 3.01 | 3.3 | 0.007 | 0.81 | 0.0 | 0.05 | 15.31 | 0.01 | 2.257 | 11.88 | 0.61 | 12.2 | 87.8 | 0.0 | -2.14 | 0.81 | 0.52 | 0.74 | 3.59 | 2061 | 306 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XWo | 33497 | 2023-09-29 | 2022-05-26 | 2.7 | 2.15 | 2.94 | 1.9 | 0.007 | 0.87 | 0.0 | 0.06 | 13.89 | 0.01 | 2.275 | 4.65 | 0.22 | 5.7 | 94.3 | 0.0 | -4.88 | 0.76 | 0.76 | 3.57 | 2.0 | 0.002 | 0.64 | 0.0 | 0.04 | 15.98 | 0.00 | 2.057 | 10.75 | 3.16 | 3.0 | 97.0 | 0.0 | -0.86 | 0.46 | 0.77 | 0.78 | 2.53 | 8725 | 1131 | 6 | 0 | 0 | 0 | 0 | logfile |