Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XBW	33107	2023-04-20	2022-03-22	2.8	3.01	2.74	3.1	0.005	0.54	0.0	0.04	11.71	0.00	2.251	6.45	0.00	2.6	97.4	0.0	1.47	0.60	0.72	2.24	3.1	0.003	0.60	0.0	0.04	15.13	0.00	2.096	10.82	2.27	2.4	97.6	0.0	0.64	1.57	0.58	0.76	2.44	6663	886	4	0	3	0	0	logfile
✔	6M68	30116	2023-04-23	2020-03-13	4.6	5.04	—	4.8	0.005	1.00	0.0	0.06	14.61	0.01	2.175	5.67	0.00	10.0	90.0	0.0	-5.56	0.66	0.79	—	4.8	0.004	0.81	0.0	0.05	13.44	0.00	2.103	17.47	0.00	10.0	90.0	0.0	-1.98	1.48	0.66	0.79	—	14938	1855	7	0	0	0	0	logfile
✔	7X9C	33071	2023-04-20	2022-03-15	3.0	3.24	—	3.2	0.002	0.52	0.0	0.04	10.16	0.00	2.208	8.69	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	3.2	0.004	0.72	0.0	0.04	14.54	0.00	2.141	12.76	2.39	3.1	96.9	0.0	-0.27	0.64	0.60	0.78	1.79	7219	945	5	0	0	0	0	logfile
✔	6UZ2	20950	2023-04-20	2019-11-14	4.2	4.39	—	4.3	0.009	1.13	0.0	0.05	13.78	0.01	2.197	31.10	2.00	15.5	84.3	0.2	-5.29	0.69	0.78	—	4.3	0.003	0.79	0.0	0.04	12.08	0.00	2.189	14.57	0.00	5.1	94.8	0.1	0.03	0.97	0.67	0.76	—	7392	1140	2	0	0	0	0	logfile
✔	6YSN	10903	2023-04-25	2020-04-22	3.0	3.17	—	3.2	0.006	0.71	0.0	0.04	13.66	0.00	2.202	5.58	0.19	5.9	94.1	0.0	-4.49	0.62	0.81	3.17	3.2	0.004	0.63	0.0	0.04	16.91	0.00	2.147	5.88	1.99	3.8	96.2	0.0	-0.53	1.25	0.70	0.86	2.74	19844	2424	8	0	4	0	0	logfile
✔	6oRQ	20178	2023-04-25	2019-04-30	4.4	4.71	4.38	4.5	0.008	1.31	0.0	0.08	12.61	0.01	2.039	6.79	1.04	16.3	83.4	0.3	-4.97	0.65	0.83	—	4.5	0.003	0.89	0.0	0.05	12.93	0.00	2.145	16.63	0.24	16.0	83.9	0.1	-3.57	1.60	0.65	0.83	—	20176	2430	40	0	83	0	0	logfile
✔	7oW8	13095	2023-04-24	2021-06-17	3.5	3.84	3.56	3.8	0.011	1.61	24.0	0.10	16.66	0.01	1.983	10.45	4.22	6.3	93.6	0.2	-3.90	0.60	0.74	1.82	3.9	0.004	0.71	0.0	0.04	17.52	0.00	1.790	10.73	0.21	5.3	94.6	0.1	-0.35	0.62	0.66	0.78	1.87	8942	1154	4	0	4	0	0	logfile
✔	7RSN	24675	2023-04-25	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	10.53	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.004	0.73	0.0	0.04	15.16	0.00	2.107	9.36	0.30	6.2	93.5	0.3	-0.48	1.61	0.69	0.83	2.12	19623	2310	33	0	99	0	0	logfile
✔	7FiG	31596	2023-04-23	2021-07-31	3.9	4.18	—	4.1	0.007	1.11	0.0	0.06	13.42	0.01	2.011	3.48	0.00	5.3	94.7	0.0	-2.06	0.65	0.76	1.78	4.1	0.003	0.87	0.0	0.05	16.53	0.00	2.108	16.17	0.78	3.5	96.5	0.0	-0.31	2.51	0.68	0.79	1.10	12839	1632	10	0	5	0	0	logfile
✔	7Y9U	33692	2023-04-20	2022-06-26	3.3	3.48	3.23	3.5	0.011	1.27	2.0	0.06	9.98	0.01	2.311	3.19	0.00	5.3	94.7	0.0	-6.23	0.60	0.84	3.22	3.5	0.003	0.63	0.0	0.04	13.73	0.00	2.158	4.60	0.24	3.6	96.4	0.0	-1.82	0.62	0.59	0.84	2.56	7748	988	6	0	2	0	0	logfile
✘	7LMS	23441	2023-04-20	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7S06	24785	2023-04-20	2021-08-30	3.3	3.59	3.40	3.6	0.004	0.66	0.0	0.05	15.06	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.64	0.0	0.05	17.38	0.00	2.229	7.74	0.46	5.9	94.1	0.0	0.92	1.07	0.69	0.83	2.34	7862	918	8	0	14	0	0	logfile
✘	7YJ4	33871	2023-04-21	2022-07-19	3.19	3.39	3.21	3.4	0.004	0.67	0.0	0.05	14.73	0.01	2.175	9.63	1.55	5.5	94.4	0.1	-0.72	0.60	0.73	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8985	1154	7	0	0	0	0	logfile
✔	7SAU	24957	2023-04-20	2021-09-23	3.0	2.41	2.77	2.7	0.005	0.61	0.0	0.04	13.77	0.01	2.122	6.13	0.15	5.1	94.9	0.0	0.64	0.61	0.84	3.01	2.7	0.003	0.55	0.0	0.04	17.55	0.00	2.131	7.16	1.21	4.5	95.5	0.0	2.39	0.54	0.60	0.84	2.26	6317	791	7	0	0	0	0	logfile
✔	6URG	20860	2023-04-22	2019-10-23	3.0	3.18	—	3.2	0.005	0.92	2.0	0.06	9.75	0.01	1.874	8.12	0.69	7.9	91.9	0.2	-3.82	0.75	0.79	3.96	3.2	0.004	0.70	0.0	0.05	16.05	0.00	2.150	9.86	3.18	7.4	92.5	0.1	-1.51	1.68	0.74	0.86	3.29	13214	1660	5	0	1	0	0	logfile
✔	5oYG	3861	2023-04-22	2017-09-08	4.06	4.29	4.02	4.1	0.007	1.27	10.0	0.10	12.53	0.01	2.282	5.95	1.98	6.9	93.1	0.0	-3.35	0.68	0.83	—	4.1	0.004	0.73	0.0	0.04	12.60	0.00	2.130	11.47	0.00	6.0	94.0	0.0	0.56	0.84	0.68	0.82	—	11596	1418	2	0	0	0	0	logfile
✔	7Q3Y	13797	2023-04-25	2021-10-29	4.34	4.62	4.39	4.4	0.007	0.90	0.0	0.05	13.63	0.01	1.969	5.69	0.19	3.2	96.8	0.0	-1.33	0.84	0.78	—	4.4	0.004	0.61	0.0	0.04	13.84	0.00	1.445	10.99	0.10	4.1	95.9	0.0	1.21	1.39	0.84	0.78	—	19627	1201	11	0	37	1	9386	logfile
✔	7CKR	30391	2023-04-20	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.09	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	3.3	0.003	0.78	0.0	0.05	17.05	0.01	2.178	14.60	3.58	4.1	95.9	0.0	0.75	1.85	0.53	0.73	1.92	4094	597	3	0	1	0	0	logfile
✔	7ADK	11729	2023-04-25	2020-09-15	2.8	3.03	2.81	3.0	0.014	2.03	21.0	0.12	15.24	0.02	0.997	1.77	0.43	9.4	90.6	0.0	-2.46	0.47	0.68	3.61	3.0	0.003	0.67	0.0	0.04	17.37	0.00	1.872	9.59	2.94	8.2	91.8	0.0	-1.87	2.91	0.56	0.76	2.72	20869	1317	2	0	0	0	10260	logfile
✔	6D83	7453	2023-04-24	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.11	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.003	0.75	0.0	0.05	13.93	0.00	1.983	16.08	0.05	4.2	95.8	0.0	-0.81	1.07	0.81	0.77	—	16588	2063	10	0	4	0	0	logfile

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