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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W6K | 32328 | 2024-03-11 | 2021-12-01 | 3.5 | 4.56 | 3.58 | 4.1 | 0.007 | 1.13 | 4.0 | 0.07 | 14.61 | 0.01 | 2.337 | 47.37 | 2.01 | 7.1 | 92.9 | 0.0 | -3.58 | 0.66 | 0.76 | 1.46 | 4.2 | 0.003 | 0.70 | 0.0 | 0.04 | 17.23 | 0.00 | 2.208 | 14.26 | 3.45 | 4.8 | 95.2 | 0.0 | 1.22 | 3.50 | 0.63 | 0.77 | 0.63 | 6468 | 820 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PoS | 20418 | 2024-03-10 | 2019-07-05 | 4.12 | 4.39 | — | 4.2 | 0.003 | 0.68 | 0.0 | 0.04 | 11.80 | 0.01 | 2.116 | 2.48 | 0.00 | 0.1 | 99.9 | 0.0 | -2.43 | 0.80 | 0.77 | — | 4.2 | 0.003 | 0.54 | 0.0 | 0.04 | 12.96 | 0.00 | 1.972 | 9.37 | 0.00 | 3.3 | 96.7 | 0.0 | 0.08 | 1.01 | 0.82 | 0.80 | — | 53503 | 3425 | 20 | 0 | 13 | 0 | 26853 | logfile |
✔ | 7E2G | 30956 | 2024-03-11 | 2021-02-05 | 3.61 | 3.75 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.06 | 13.57 | 0.00 | 2.132 | 13.35 | 0.14 | 9.8 | 90.2 | 0.0 | -2.91 | 0.62 | 0.82 | 1.67 | 3.7 | 0.002 | 0.67 | 0.0 | 0.04 | 14.59 | 0.00 | 2.230 | 8.24 | 2.04 | 8.3 | 91.7 | 0.0 | 0.19 | 0.40 | 0.62 | 0.81 | 1.42 | 7376 | 901 | 1 | 0 | 15 | 0 | 0 | logfile |
✔ | 5XTB | 6771 | 2024-03-20 | 2017-06-18 | 3.4 | 3.53 | — | 3.5 | 0.010 | 1.63 | 0.0 | 0.07 | 9.56 | 0.01 | 1.482 | 28.48 | 0.33 | 6.7 | 90.3 | 3.0 | -1.70 | 0.75 | 0.73 | 1.37 | 3.5 | 0.004 | 0.79 | 0.0 | 0.04 | 16.06 | 0.01 | 2.114 | 15.37 | 3.23 | 6.6 | 92.6 | 0.8 | -0.65 | 1.88 | 0.80 | 0.85 | 1.95 | 27962 | 3491 | 25 | 0 | 11 | 0 | 0 | logfile |
✔ | 7ToE | 26030 | 2024-03-16 | 2022-01-24 | 3.0 | 3.29 | — | 3.3 | 0.003 | 0.59 | 0.0 | 0.04 | 14.04 | 0.00 | 2.201 | 8.94 | 0.12 | 3.9 | 96.0 | 0.1 | -0.13 | 0.72 | 0.83 | 3.59 | 3.3 | 0.003 | 0.60 | 0.0 | 0.04 | 16.95 | 0.00 | 2.133 | 10.14 | 1.59 | 4.0 | 96.0 | 0.0 | -0.17 | 0.47 | 0.74 | 0.87 | 3.22 | 15100 | 1868 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SBF | 24978 | 2024-03-11 | 2021-09-24 | 2.9 | 3.28 | — | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 12.82 | 0.00 | 2.200 | 7.87 | 0.23 | 3.8 | 96.1 | 0.1 | -0.02 | 0.75 | 0.82 | 3.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8525 | 1119 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 8GZ8 | 34392 | 2024-03-10 | 2022-09-26 | 2.35 | 2.27 | 2.10 | 2.5 | 0.005 | 0.73 | 0.0 | 0.06 | 14.15 | 0.00 | 2.500 | 6.32 | 0.00 | 0.5 | 99.5 | 0.0 | -0.71 | 0.43 | 0.88 | 4.53 | 2.6 | 0.005 | 0.69 | 0.0 | 0.06 | 14.97 | 0.00 | 2.213 | 4.36 | 2.92 | 1.4 | 98.6 | 0.0 | -0.66 | 0.87 | 0.42 | 0.90 | 4.58 | 3336 | 540 | 71 | 0 | 0 | 20 | 0 | logfile |
✔ | 7F23 | 31426 | 2024-03-15 | 2021-06-10 | 3.58 | 3.82 | — | 3.8 | 0.010 | 1.01 | 0.0 | 0.06 | 15.07 | 0.01 | 2.087 | 17.66 | 0.57 | 4.4 | 95.6 | 0.0 | -2.63 | 0.66 | 0.80 | 1.60 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.94 | 0.00 | 2.130 | 13.55 | 2.49 | 2.7 | 97.3 | 0.0 | 0.46 | 0.63 | 0.65 | 0.78 | 1.47 | 8211 | 1037 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 6KFF | 9971 | 2024-03-18 | 2019-07-07 | 3.8 | 3.93 | — | 3.9 | 0.004 | 0.60 | 0.0 | 0.04 | 15.08 | 0.00 | 2.182 | 8.35 | 0.35 | 9.2 | 90.8 | 0.0 | -2.57 | 0.67 | 0.82 | 1.08 | 3.9 | 0.003 | 0.67 | 0.0 | 0.04 | 17.24 | 0.00 | 2.203 | 10.04 | 5.10 | 8.6 | 91.4 | 0.0 | 0.10 | 0.54 | 0.64 | 0.82 | 1.05 | 21192 | 2576 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZLG | 11265 | 2024-03-22 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | 3.1 | 0.002 | 0.37 | 0.0 | 0.03 | 17.78 | 0.00 | 2.156 | 5.87 | 3.13 | 1.5 | 98.5 | 0.0 | 5.38 | 1.17 | 0.81 | 0.89 | 2.84 | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G6K | 29772 | 2024-03-14 | 2023-02-15 | 3.6 | 3.71 | 3.52 | 3.4 | 0.002 | 0.48 | 0.0 | 0.04 | 4.19 | 0.00 | 2.523 | 0.20 | 0.00 | 2.7 | 97.3 | 0.0 | 1.65 | 0.54 | 0.71 | — | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 4.83 | 0.00 | 2.269 | 4.05 | 0.00 | 8.2 | 91.8 | 0.0 | -0.23 | 1.47 | 0.54 | 0.74 | — | 9388 | 1379 | 7 | 0 | 0 | 0 | 2576 | logfile |
✔ | 7E2D | 30955 | 2024-03-19 | 2021-02-05 | 3.71 | 3.99 | — | 3.8 | 0.007 | 1.44 | 3.0 | 0.08 | 14.42 | 0.01 | 1.563 | 7.01 | 0.69 | 10.0 | 89.1 | 0.9 | -4.65 | 0.81 | 0.70 | 1.33 | 3.7 | 0.004 | 0.77 | 0.0 | 0.05 | 16.07 | 0.00 | 2.155 | 14.35 | 2.72 | 11.0 | 88.7 | 0.2 | -2.14 | 0.73 | 0.82 | 0.74 | 1.23 | 23331 | 3291 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D66 | 27218 | 2024-03-15 | 2022-06-06 | 3.14 | 3.25 | 3.04 | 3.2 | 0.009 | 1.02 | 0.0 | 0.06 | 18.54 | 0.01 | 2.309 | 7.77 | 0.00 | 6.2 | 93.8 | 0.0 | -1.63 | 0.69 | 0.83 | 3.44 | 3.2 | 0.004 | 0.57 | 0.0 | 0.05 | 15.70 | 0.00 | 2.183 | 7.42 | 2.18 | 5.2 | 94.8 | 0.0 | 0.02 | 0.35 | 0.72 | 0.85 | 3.37 | 12800 | 1540 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2024-03-15 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.59 | 0.0 | 0.04 | 14.31 | 0.00 | 2.135 | 7.57 | 0.00 | 8.4 | 91.6 | 0.0 | -1.96 | 1.18 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 7XJL | 33231 | 2024-03-11 | 2022-04-18 | 3.5 | 3.88 | 3.61 | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 13.57 | 0.00 | 2.168 | 10.62 | 0.00 | 2.4 | 97.6 | 0.0 | 0.78 | 0.63 | 0.77 | 1.72 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.17 | 0.00 | 2.163 | 15.30 | 3.24 | 2.8 | 97.2 | 0.0 | 0.89 | 0.45 | 0.62 | 0.78 | 1.73 | 8527 | 1137 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G06 | 3366 | 2024-03-20 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.05 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | 4.7 | 0.003 | 0.72 | 0.0 | 0.04 | 14.27 | 0.00 | 2.111 | 15.98 | 0.00 | 3.4 | 96.4 | 0.1 | -0.28 | 1.77 | 0.88 | 0.79 | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X5C | 6706 | 2024-03-20 | 2017-02-15 | 4.1 | 4.20 | — | 4.1 | 0.014 | 1.75 | 3.0 | 0.08 | 14.64 | 0.01 | 1.435 | 30.55 | 5.82 | 13.2 | 85.6 | 1.2 | -3.80 | 0.65 | 0.57 | — | 4.1 | 0.004 | 0.97 | 0.0 | 0.05 | 12.94 | 0.01 | 2.033 | 20.53 | 0.03 | 13.1 | 86.8 | 0.1 | -2.47 | 1.54 | 0.71 | 0.70 | — | 26418 | 3423 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o17 | 12692 | 2024-03-15 | 2021-03-28 | 4.5 | 4.66 | — | 4.2 | 0.007 | 1.22 | 0.0 | 0.07 | 16.81 | 0.01 | 2.089 | 10.97 | 1.09 | 9.8 | 90.2 | 0.0 | -5.33 | 0.78 | 0.83 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 14.54 | 0.00 | 1.980 | 20.49 | 0.00 | 6.5 | 93.5 | 0.0 | -1.87 | 0.55 | 0.78 | 0.83 | — | 11679 | 1531 | 7 | 0 | 4 | 0 | 0 | logfile |
✔ | 7SL9 | 25195 | 2024-03-10 | 2021-10-23 | 3.5 | 3.79 | — | 3.7 | 0.005 | 0.95 | 0.0 | 0.06 | 13.95 | 0.01 | 2.259 | 4.68 | 0.40 | 5.9 | 94.1 | 0.0 | -6.01 | 0.64 | 0.82 | 2.99 | 3.7 | 0.005 | 0.80 | 0.0 | 0.04 | 15.79 | 0.00 | 2.074 | 13.82 | 4.25 | 6.7 | 93.3 | 0.0 | -1.27 | 1.21 | 0.64 | 0.83 | 1.77 | 4712 | 619 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NKJ | 12441 | 2024-03-25 | 2021-02-18 | 2.17 | 2.16 | — | 2.1 | 0.005 | 0.59 | 0.0 | 0.05 | 17.26 | 0.00 | 1.958 | 2.88 | 1.05 | 1.8 | 98.2 | 0.1 | 1.04 | 0.80 | 0.89 | 6.04 | 2.1 | 0.004 | 0.54 | 0.0 | 0.04 | 17.05 | 0.00 | 1.772 | 2.88 | 0.88 | 1.7 | 98.2 | 0.1 | 1.21 | 0.13 | 0.80 | 0.90 | 5.95 | 45605 | 2945 | 20 | 0 | 11 | 516 | 22478 | logfile |