Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RNN	24580	2023-07-03	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	13.56	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.004	0.64	0.0	0.04	15.50	0.00	2.212	6.34	1.09	1.9	98.1	0.0	0.60	0.97	0.49	0.87	4.03	4000	540	2	0	2	0	0	logfile
✔	7oTV	13067	2023-07-13	2021-06-10	3.24	3.53	—	3.4	0.012	0.79	0.0	0.10	14.43	0.01	2.090	10.98	0.34	8.5	91.4	0.1	-1.18	0.71	0.65	0.82	3.4	0.003	0.73	0.0	0.04	16.62	0.00	2.121	10.10	0.31	6.1	93.9	0.0	-0.41	0.90	0.77	0.77	0.92	29041	3636	1	0	21	0	0	logfile
✔	7SFW	25104	2023-07-17	2021-10-04	3.2	3.27	3.18	3.3	0.004	0.62	0.0	0.05	14.02	0.01	2.133	10.14	0.05	4.4	95.6	0.0	-0.35	0.68	0.85	3.24	3.3	0.003	0.62	0.0	0.04	15.81	0.00	2.055	11.02	0.26	4.6	95.4	0.0	-0.47	1.50	0.66	0.86	2.93	38620	4984	28	0	12	0	0	logfile
✘	7Z5J	14522	2023-07-20	2022-03-09	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25576	3234	24	0	54	0	0	logfile
✔	7MoA	23922	2023-07-06	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	18.23	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.003	0.72	0.0	0.05	13.33	0.00	2.133	15.77	0.00	4.8	95.2	0.1	-1.11	0.92	0.84	0.78	—	12511	1580	5	0	12	0	0	logfile
✔	8CSX	26974	2023-07-05	2022-05-13	2.4	2.08	2.44	2.1	0.006	0.79	1.0	0.05	13.62	0.01	2.208	4.92	3.86	1.7	98.2	0.1	1.76	0.69	0.88	5.16	2.1	0.005	0.66	0.0	0.04	15.77	0.01	2.040	6.47	2.04	1.8	98.2	0.0	1.86	0.36	0.69	0.88	4.84	9116	1158	8	0	4	150	0	logfile
✔	7TJ5	25916	2023-07-06	2022-01-14	2.41	3.25	2.42	2.9	0.006	1.92	0.0	0.05	19.56	0.01	2.285	5.53	0.22	5.4	94.6	0.0	0.48	0.69	0.72	2.97	2.9	0.004	0.72	0.0	0.04	17.16	0.00	2.319	8.30	1.34	3.9	96.1	0.0	1.98	1.48	0.73	0.85	2.51	13152	1568	8	0	32	0	0	logfile
✔	6XEU	22150	2023-07-05	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.47	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.63	0.00	2.305	3.40	0.09	4.3	95.7	0.0	0.15	0.37	0.77	0.89	3.06	10544	1312	8	0	16	0	0	logfile
✔	7APX	11859	2023-07-10	2020-10-20	3.4	4.19	—	4.0	0.006	0.76	0.0	0.05	16.32	0.00	2.090	9.36	9.74	6.3	93.6	0.1	-2.30	0.83	0.83	1.26	4.0	0.003	0.62	0.0	0.04	15.85	0.00	2.171	7.03	0.22	5.2	94.8	0.0	1.33	0.46	0.81	0.80	1.12	20552	2870	6	0	19	0	0	logfile
✔	6YRF	10888	2023-07-11	2020-04-20	3.9	4.58	—	4.2	0.006	0.78	0.0	0.05	14.50	0.00	2.028	27.54	0.21	12.8	87.1	0.1	-3.65	0.91	0.84	1.12	4.2	0.003	0.71	0.0	0.04	15.77	0.00	2.084	16.66	0.43	10.1	89.9	0.0	-0.77	0.56	0.91	0.82	0.90	24828	3108	4	0	0	0	0	logfile
✔	7oTM	13062	2023-07-13	2021-06-10	3.33	3.97	—	3.7	0.008	0.93	1.0	0.05	14.51	0.01	2.071	16.56	0.28	9.2	90.6	0.2	-1.79	0.82	0.77	1.32	3.7	0.003	0.70	0.0	0.04	15.94	0.00	2.146	11.32	0.16	6.4	93.6	0.0	-0.53	1.41	0.84	0.80	0.80	29040	3636	1	0	21	0	0	logfile
✔	8FHN	29096	2023-07-07	2022-12-14	3.0	3.42	3.14	3.4	0.009	0.99	1.0	0.06	14.56	0.01	2.199	6.72	2.21	4.7	95.3	0.0	-1.79	0.69	0.88	3.88	3.4	0.003	0.54	0.0	0.04	16.06	0.00	2.189	5.23	2.07	2.5	97.4	0.1	0.29	0.40	0.66	0.88	3.04	13613	1722	5	0	4	0	0	logfile
✔	7F02	31394	2023-07-04	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.12	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.003	0.69	0.0	0.04	15.99	0.00	1.940	9.00	0.33	8.1	91.9	0.0	-0.43	0.93	0.65	0.83	2.07	8835	1130	9	0	5	0	0	logfile
✔	7EPB	31236	2023-07-07	2021-04-26	3.1	3.55	—	3.4	0.004	0.62	0.0	0.06	13.65	0.00	2.292	8.87	0.08	4.5	95.5	0.0	-1.65	0.63	0.74	1.33	3.3	0.003	0.65	0.0	0.04	15.24	0.00	2.227	13.98	0.24	6.0	94.0	0.0	-0.51	0.54	0.66	0.81	1.43	13104	1794	6	0	2	0	0	logfile
✔	7LKH	23408	2023-07-03	2021-02-02	3.5	3.06	—	3.6	0.006	0.94	0.0	0.05	13.23	0.01	1.903	8.34	0.22	5.5	94.5	0.0	-0.99	0.64	0.78	3.39	3.5	0.004	0.73	0.0	0.05	15.48	0.00	2.177	6.77	0.65	5.9	94.1	0.0	-0.34	0.47	0.66	0.80	3.21	4179	516	4	0	2	0	0	logfile
✔	7VC0	31887	2023-07-18	2021-09-01	2.6	2.60	—	2.6	0.008	0.88	0.0	0.04	16.03	0.01	2.024	8.05	0.05	3.3	96.6	0.1	1.52	0.74	0.89	4.68	2.6	0.003	0.55	0.0	0.04	16.80	0.00	2.095	6.18	0.85	3.0	97.0	0.1	1.98	0.32	0.75	0.91	4.33	40048	4727	69	0	26	424	0	logfile
✔	7QNB	14073	2023-07-07	2021-12-20	3.1	3.62	—	3.3	0.003	0.46	0.0	0.04	9.36	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.007	0.72	0.0	0.05	12.99	0.00	2.102	9.27	0.25	3.2	96.8	0.0	0.88	2.30	0.78	0.90	3.87	14793	1767	15	0	24	0	0	logfile
✔	7FD5	31535	2023-07-17	2021-07-16	2.4	3.12	—	2.9	0.015	1.23	4.0	0.07	11.36	0.01	2.203	5.63	0.51	6.3	93.5	0.2	-3.77	0.71	0.72	3.86	2.9	0.003	0.63	0.0	0.04	13.74	0.00	2.150	7.02	1.35	4.7	95.3	0.0	0.18	1.00	0.75	0.86	2.78	37179	4674	13	0	34	0	0	logfile
✔	7VF2	31946	2023-07-07	2021-09-10	3.0	3.55	—	3.4	0.004	0.73	0.0	0.04	15.88	0.00	2.095	9.72	0.26	3.7	96.3	0.0	-2.72	0.77	0.84	1.85	3.4	0.004	0.70	0.0	0.04	17.97	0.00	2.170	10.49	1.42	3.2	96.8	0.0	1.29	0.60	0.75	0.85	1.31	13565	1716	4	0	0	0	0	logfile
✔	7QN5	14067	2023-07-08	2021-12-20	2.5	2.72	—	2.6	0.003	0.60	0.0	0.05	12.09	0.01	2.290	4.02	0.36	1.6	98.4	0.0	1.02	0.75	0.88	4.90	2.6	0.004	0.86	0.0	0.05	15.36	0.00	1.982	8.29	1.13	1.4	98.6	0.0	1.66	2.10	0.78	0.92	4.89	16048	1881	25	0	39	174	0	logfile

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