Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8D4T	27196	2023-02-26	2022-06-02	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27974	1738	17	0	12	0	13710	logfile
✔	7KiP	22889	2023-02-27	2020-10-24	3.39	4.00	3.47	3.9	0.009	0.90	0.0	0.06	8.62	0.01	2.290	1.86	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.003	0.55	0.0	0.04	11.32	0.00	2.214	4.09	0.13	5.8	94.2	0.0	-1.42	0.57	0.85	0.87	2.65	30612	3576	69	0	222	0	0	logfile
✔	7oH6	12895	2023-02-20	2021-05-09	3.0	3.69	3.20	3.6	0.003	1.12	0.0	0.04	11.63	0.00	1.720	4.93	1.20	4.0	96.0	0.0	-2.49	0.65	0.74	2.83	3.6	0.003	0.83	0.0	0.04	14.19	0.00	1.896	7.87	2.08	3.3	96.7	0.1	-0.28	1.22	0.65	0.75	2.28	11552	1414	7	0	10	2	0	logfile
✔	7EW7	31349	2023-02-19	2021-05-24	3.27	3.91	—	3.9	0.003	0.59	0.0	0.04	13.52	0.00	2.016	6.68	0.71	3.6	96.4	0.0	-2.17	0.56	0.74	2.49	3.9	0.002	0.54	0.0	0.04	15.58	0.00	2.134	6.68	0.20	3.8	96.2	0.0	-0.29	0.95	0.60	0.78	1.96	9004	1144	6	0	1	0	0	logfile
✔	7VAB	31836	2023-02-18	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	8.78	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.003	0.56	0.0	0.04	14.70	0.00	2.120	6.94	0.65	2.7	97.3	0.0	0.78	0.82	0.68	0.82	2.68	8772	1077	7	0	6	0	0	logfile
✔	7K4C	22664	2023-02-23	2020-09-15	3.78	4.46	—	4.3	0.009	1.09	0.0	0.06	11.45	0.01	2.296	5.28	0.00	11.4	88.5	0.2	-5.34	0.74	0.80	1.36	4.3	0.004	0.87	0.0	0.04	14.91	0.00	2.187	15.39	0.71	9.6	90.4	0.0	-2.22	0.97	0.73	0.78	0.98	19744	2444	8	0	7	0	0	logfile
✔	7WVW	32860	2023-02-18	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.28	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.003	0.58	0.0	0.04	15.56	0.00	2.170	11.45	0.26	2.5	97.5	0.0	0.69	1.18	0.65	0.83	2.47	7169	924	5	0	0	0	0	logfile
✔	7DSQ	30841	2023-02-18	2020-12-31	3.4	3.49	—	3.5	0.010	1.18	0.0	0.49	15.73	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.23	0.0	0.11	16.10	0.00	2.220	7.20	0.13	8.1	91.8	0.1	0.04	0.56	0.64	0.83	1.52	7507	935	7	0	11	15	0	logfile
✔	7XMT	33304	2023-02-18	2022-04-26	2.8	2.93	2.65	3.0	0.004	0.56	0.0	0.04	9.47	0.00	2.267	6.39	0.00	3.0	97.0	0.0	-3.88	0.55	0.63	1.96	2.9	0.003	0.69	0.0	0.04	14.98	0.00	2.099	13.79	1.76	3.4	96.6	0.0	-0.75	1.31	0.60	0.74	2.91	8137	1068	6	0	1	0	0	logfile
✔	7XQ9	33391	2023-02-23	2022-05-07	3.3	3.62	3.55	3.8	0.005	0.83	0.0	0.06	14.70	0.01	2.253	1.72	3.89	3.6	96.4	0.0	-2.05	0.52	0.82	2.74	3.8	0.002	0.51	0.0	0.03	15.61	0.00	2.205	4.12	0.14	2.2	97.8	0.0	3.52	0.53	0.54	0.83	2.53	19632	2412	12	0	0	0	0	logfile
✔	7KTW	23032	2023-02-18	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.80	0.0	0.04	13.32	0.00	2.163	18.78	0.12	3.4	96.6	0.0	0.23	0.96	0.80	0.79	—	7577	995	1	0	0	0	0	logfile
✘	6V3H	21037	2023-02-19	2019-11-25	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9926	1232	8	0	21	0	0	logfile
✔	7B5C	12025	2023-02-20	2020-12-03	3.7	3.81	3.61	3.8	0.005	0.86	0.0	0.05	15.21	0.01	2.239	7.43	0.78	5.9	94.1	0.0	-3.64	0.62	0.77	1.51	3.8	0.004	0.72	0.0	0.04	16.46	0.01	2.097	11.63	0.55	6.2	93.8	0.0	-0.41	0.66	0.62	0.77	1.34	11770	1436	4	0	4	0	0	logfile
✔	6iRS	9721	2023-02-18	2018-11-14	3.3	3.44	—	3.4	0.011	1.35	0.0	0.07	12.97	0.01	2.150	13.11	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	3.4	0.003	0.77	0.0	0.04	16.03	0.00	2.144	10.20	0.13	6.9	93.0	0.1	-0.75	1.44	0.64	0.79	1.84	7337	926	7	0	10	0	0	logfile
✔	7WPo	32686	2023-02-18	2022-01-24	3.5	3.78	—	3.7	0.013	1.63	6.0	0.11	10.00	0.01	2.359	5.22	0.48	2.6	97.3	0.1	-0.13	0.70	0.79	3.06	3.7	0.002	0.60	0.0	0.04	14.23	0.00	2.212	5.91	0.00	1.6	98.4	0.0	2.30	1.78	0.69	0.83	2.46	6829	867	8	0	17	0	0	logfile
✔	6BGi	7095	2023-02-18	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.004	0.86	0.0	0.04	14.96	0.00	1.980	17.77	0.65	11.9	88.1	0.0	-2.04	1.10	0.48	0.66	1.53	7774	1020	4	0	4	0	0	logfile
✔	7FFL	31568	2023-02-25	2021-07-23	3.1	3.25	—	3.2	0.007	0.96	4.0	0.07	9.55	0.01	2.092	5.13	0.35	6.7	93.2	0.2	-3.39	0.46	0.81	3.29	3.2	0.005	0.72	0.0	0.05	13.92	0.00	1.996	8.92	0.43	6.2	93.6	0.2	-0.70	1.50	0.47	0.86	3.11	25767	3336	18	0	3	0	0	logfile
✔	7TJV	25933	2023-02-24	2022-01-17	3.6	3.57	3.65	3.6	0.003	0.66	0.0	0.05	12.37	0.01	1.836	2.06	0.00	1.9	98.1	0.0	0.21	0.62	0.81	2.69	3.6	0.003	0.63	0.0	0.04	16.25	0.00	1.853	9.09	0.51	2.4	97.6	0.0	0.59	1.47	0.62	0.82	1.85	23170	3110	12	0	10	0	0	logfile
✔	7FJF	31620	2023-02-18	2021-08-03	3.1	2.99	—	3.2	0.010	1.34	0.0	0.07	12.14	0.01	2.256	4.88	1.73	8.9	90.8	0.3	-3.59	0.60	0.76	2.76	3.2	0.003	0.67	0.0	0.04	15.50	0.00	2.134	5.60	0.22	5.3	94.6	0.1	0.19	2.42	0.64	0.83	3.10	8377	1058	10	0	2	0	0	logfile
✔	7WUi	32836	2023-02-20	2022-02-08	3.1	2.72	—	3.1	0.007	1.11	0.0	0.07	13.96	0.01	2.221	25.83	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.1	0.003	0.63	0.0	0.04	15.87	0.00	2.068	23.19	0.77	4.1	95.9	0.0	-1.08	1.15	0.56	0.73	2.31	9666	1225	7	0	0	0	0	logfile

• ← previous
• Page 8 of 353
• next →