Table showing results for May 2021

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WQ0	21867	2021-05-07	2020-04-28	2.8	2.89	—	2.9	0.007	0.71	0.0	0.04	13.85	0.01	2.210	4.29	0.00	1.6	98.4	0.0	-0.40	0.60	0.90	4.25	2.9	0.004	0.59	0.0	0.04	15.01	0.00	2.270	3.87	0.95	0.8	99.2	0.0	3.24	1.11	0.59	0.90	3.69	57467	6026	48	602	0	0	0	logfile
✔	6Y9A	10734	2021-05-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.82	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.45	—	5.6	0.003	0.79	0.0	0.05	13.42	0.01	2.175	17.52	0.00	5.9	94.1	0.0	-0.14	1.50	0.56	0.67	—	5948	776	4	0	0	0	0	logfile
✔	6PE4	20322	2021-05-05	2019-06-20	3.1	3.17	—	3.1	0.008	1.10	1.0	0.06	10.56	0.01	2.164	2.66	0.30	5.7	94.2	0.2	-4.12	0.72	0.88	3.81	3.1	0.005	0.66	0.0	0.04	14.22	0.00	2.068	5.19	0.23	4.8	95.2	0.0	0.96	1.19	0.72	0.89	2.38	24914	3295	16	0	0	0	0	logfile
✔	6UoT	20832	2021-05-04	2019-10-15	3.3	3.41	—	3.4	0.009	1.10	0.0	0.06	12.07	0.01	2.166	4.79	4.35	5.9	94.1	0.0	-4.68	0.76	0.83	2.86	3.4	0.004	0.68	0.0	0.04	16.41	0.00	2.119	11.30	0.63	2.7	97.3	0.0	-0.43	1.48	0.77	0.85	1.98	72744	9072	48	0	0	0	0	logfile
✔	6W8U	21578	2021-05-06	2020-03-21	3.8	4.14	—	4.0	0.004	0.54	0.0	0.05	12.25	0.00	2.062	10.46	0.48	4.4	95.6	0.0	-2.73	0.64	0.87	1.74	4.0	0.003	0.58	0.0	0.05	15.21	0.01	2.051	11.90	0.29	3.4	96.6	0.0	-0.62	1.16	0.64	0.85	1.27	41082	5740	41	0	0	0	0	logfile
✔	6LT0	0966	2021-05-04	2020-01-21	3.2	3.27	—	3.2	0.005	1.08	0.0	0.06	11.86	0.01	1.898	5.81	0.00	13.3	86.4	0.3	-5.35	0.59	0.57	1.80	3.2	0.005	0.84	0.0	0.05	16.19	0.01	2.106	14.73	0.61	10.7	89.2	0.1	-2.68	1.16	0.68	0.74	1.72	17774	2228	6	0	0	0	0	logfile
✔	6SiH	10210	2021-05-06	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.003	0.58	0.0	0.04	13.47	0.00	2.024	12.22	0.00	4.8	95.2	0.0	1.35	1.59	0.88	0.79	—	37310	4880	10	0	0	0	0	logfile
✔	6WH7	21668	2021-05-07	2020-04-07	2.78	2.79	—	2.9	0.011	0.89	0.0	0.07	9.91	0.01	1.989	20.55	0.71	3.5	96.2	0.3	-1.50	0.74	0.88	5.74	2.8	0.003	0.61	0.0	0.05	15.50	0.00	2.037	12.61	3.16	6.6	93.4	0.0	-1.06	0.58	0.72	0.87	3.85	151800	19020	60	0	0	0	0	logfile
✔	6PE5	20323	2021-05-05	2019-06-20	3.2	3.26	—	3.2	0.007	1.07	2.0	0.06	10.65	0.02	2.138	2.86	0.45	6.4	93.4	0.2	-3.44	0.71	0.86	2.95	3.2	0.004	0.65	0.0	0.04	14.80	0.00	2.138	5.59	0.27	5.0	94.9	0.0	1.23	2.24	0.73	0.89	1.97	27642	3666	17	0	0	0	0	logfile
✔	6SKN	10229	2021-05-05	2019-08-16	4.5	4.78	4.35	4.5	0.003	0.61	0.0	0.04	12.96	0.00	1.979	8.47	0.18	1.6	98.4	0.0	-1.15	0.58	0.71	—	4.5	0.004	0.76	0.0	0.04	13.63	0.00	2.049	16.88	0.18	3.3	96.7	0.0	0.42	1.67	0.60	0.83	—	30984	3960	18	0	0	0	0	logfile
✘	6LQJ	0947	2021-05-04	2020-01-13	3.24	3.40	3.06	3.4	0.007	0.76	0.0	0.05	16.29	0.00	2.216	11.00	5.34	9.1	90.9	0.0	-3.28	0.74	0.84	2.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17100	2214	18	0	0	0	0	logfile
✔	6WPK	21863	2021-05-06	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.72	0.65	7.9	92.0	0.0	-3.83	0.75	0.84	2.02	3.3	0.004	0.76	0.0	0.04	16.40	0.01	2.327	7.26	0.27	6.3	93.7	0.0	0.54	0.46	0.74	0.83	1.41	33229	4376	8	0	0	0	0	logfile
✔	6WB2	21585	2021-05-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.65	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.002	0.53	0.0	0.04	11.45	0.00	2.201	10.46	0.17	3.8	96.2	0.0	-0.04	0.66	0.87	0.82	—	8407	946	4	75	0	0	0	logfile
✔	6WUC	21910	2021-05-04	2020-05-04	3.23	3.36	—	3.3	0.004	0.73	1.0	0.05	13.18	0.00	1.351	17.65	2.97	9.0	90.4	0.6	-3.18	0.71	0.85	2.31	3.3	0.003	0.65	0.0	0.04	15.94	0.00	2.215	9.98	0.17	8.5	91.5	0.0	0.33	0.99	0.71	0.85	1.62	10284	1266	5	0	0	0	0	logfile
✔	6WAZ	21582	2021-05-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.80	0.0	0.06	14.85	0.01	1.931	9.92	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.63	0.0	0.04	14.26	0.00	2.193	9.92	0.00	6.6	93.4	0.0	-0.98	1.32	0.83	0.84	—	8537	955	4	54	0	0	0	logfile
✔	6W8X	21579	2021-05-05	2020-03-21	3.4	3.77	—	3.6	0.005	0.59	0.0	0.05	11.44	0.00	2.038	8.22	0.00	4.3	95.7	0.0	-2.19	0.59	0.85	2.04	3.6	0.004	0.60	0.0	0.05	13.33	0.00	2.082	7.43	0.21	2.9	97.1	0.0	-0.11	0.36	0.59	0.86	1.99	29766	4356	33	0	0	0	0	logfile
✔	6VNW	21251	2021-05-05	2020-01-29	3.44	3.62	—	3.6	0.004	0.81	7.0	0.06	14.77	0.00	2.078	13.29	2.05	8.1	91.7	0.1	-3.20	0.68	0.66	1.23	3.6	0.007	0.81	0.0	0.05	16.50	0.01	2.095	13.99	0.52	8.2	91.8	0.0	-0.87	2.08	0.77	0.80	1.66	27486	3831	8	0	0	0	0	logfile
✔	7JM3	22384	2021-05-15	2020-07-30	3.4	3.43	—	3.4	0.013	0.96	0.0	0.06	15.30	0.01	0.521	21.42	0.00	10.1	89.5	0.4	-6.47	0.55	0.72	1.95	3.4	0.006	0.77	0.0	0.04	17.71	0.01	1.901	13.38	0.44	8.1	91.6	0.4	-1.48	1.53	0.59	0.81	2.64	235260	15060	60	0	0	0	118860	logfile
✔	6Y97	10733	2021-05-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.17	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.003	0.72	0.0	0.04	13.37	0.01	2.110	18.44	0.21	6.8	93.2	0.0	0.43	1.27	0.71	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6WYJ	21966	2021-05-03	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.58	0.0	0.04	14.64	0.00	2.306	4.76	0.64	1.5	98.5	0.0	2.31	1.19	0.62	0.80	1.59	2949	398	1	0	0	0	0	logfile

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