Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KB5	22787	2023-07-05	2020-10-01	3.8	4.51	3.86	4.0	0.004	0.64	0.0	0.04	13.76	0.00	2.163	7.30	0.00	4.4	95.6	0.0	-1.47	0.65	0.84	1.16	4.0	0.005	0.70	0.0	0.04	15.11	0.00	2.152	10.28	0.29	4.0	96.0	0.0	1.97	0.54	0.65	0.85	1.30	9777	1252	6	0	0	0	0	logfile
✔	7SZ1	25559	2023-07-09	2021-11-25	3.4	4.37	—	3.5	0.005	0.79	0.0	0.05	14.47	0.00	2.092	10.94	1.65	14.5	85.3	0.2	-4.74	0.85	0.75	1.55	3.6	0.003	0.70	0.0	0.05	15.22	0.00	2.105	13.49	0.17	11.7	88.2	0.1	-2.54	2.26	0.90	0.84	1.34	10216	1322	4	0	0	0	0	logfile
✔	7PFX	13383	2023-07-08	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.33	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.004	0.66	0.0	0.04	30.58	0.00	2.131	19.18	0.00	2.8	97.2	0.0	1.72	1.57	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	6WPK	21863	2023-07-15	2020-04-27	3.3	3.38	—	3.3	0.018	1.13	0.0	0.04	15.34	0.00	2.277	10.97	0.65	7.8	92.2	0.0	-3.81	0.75	0.84	2.02	3.3	0.003	0.65	0.0	0.04	16.56	0.00	2.373	6.62	0.39	6.1	93.9	0.0	0.26	0.44	0.74	0.84	1.52	33229	4376	8	0	0	0	0	logfile
✔	7XGR	33187	2023-07-04	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile
✔	7LYA	23590	2023-07-08	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.62	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.004	0.58	0.0	0.03	28.05	0.00	2.152	3.99	1.25	2.1	97.9	0.0	2.09	0.27	0.73	0.86	2.77	12098	767	10	293	0	0	0	logfile
✔	8EZ0	28725	2023-07-09	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.014	0.72	0.0	0.04	16.52	0.01	2.158	13.94	0.24	7.3	92.7	0.0	-1.49	1.15	0.84	0.82	1.91	14640	1815	6	0	0	0	0	logfile
✔	7STH	25428	2023-07-08	2021-11-13	3.5	4.00	—	3.7	0.003	0.56	0.0	0.04	13.68	0.00	2.200	9.57	0.38	7.5	92.4	0.2	-1.32	0.85	0.83	2.05	3.8	0.003	0.59	0.0	0.04	15.02	0.00	2.160	11.21	0.13	6.2	93.8	0.1	-1.13	0.39	0.85	0.82	2.24	14010	1736	4	0	0	0	0	logfile
✔	7STi	25429	2023-07-08	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.75	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.004	0.65	0.0	0.04	13.42	0.00	2.110	26.65	0.00	9.2	90.6	0.2	-1.29	1.61	0.89	0.84	—	13531	1678	3	0	0	0	0	logfile
✔	7ZZY	15041	2023-07-04	2022-05-26	3.3	4.29	3.23	3.7	0.002	0.47	0.0	0.04	16.51	0.00	2.238	2.10	0.31	2.8	97.2	0.0	1.09	0.82	0.78	2.57	3.7	0.004	0.78	0.0	0.04	17.47	0.00	2.247	9.31	0.00	3.0	97.0	0.0	1.66	1.83	0.89	0.83	2.44	8784	1104	16	0	0	24	0	logfile
✔	7PF6	13369	2023-07-08	2021-08-11	4.0	4.89	—	3.7	0.006	0.99	0.0	0.06	29.66	0.01	2.268	7.80	0.00	1.9	98.1	0.0	-0.75	0.87	0.76	—	3.7	0.005	0.82	0.0	0.06	30.43	0.00	2.025	24.30	0.58	4.1	95.9	0.0	0.26	1.75	0.87	0.78	—	13470	843	11	334	0	0	0	logfile
✔	8H8B	34541	2023-07-04	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.003	0.62	0.0	0.04	15.26	0.00	2.256	6.60	0.34	9.5	90.5	0.0	-1.76	0.61	0.74	0.85	3.67	8344	1027	1	0	0	0	0	logfile
✔	7YoU	33987	2023-07-09	2022-08-02	3.41	3.21	3.36	3.3	0.008	1.00	0.0	0.06	10.41	0.01	2.288	5.17	0.34	6.9	93.1	0.0	-3.52	0.78	0.83	2.72	3.3	0.003	0.69	0.0	0.04	14.48	0.00	2.165	11.03	0.20	4.7	95.3	0.0	0.56	1.67	0.79	0.84	1.63	18266	2321	5	0	0	0	0	logfile
✔	7oGL	12883	2023-07-07	2021-05-06	3.4	3.47	3.42	3.5	0.016	1.97	20.0	0.12	13.71	0.01	2.082	6.91	1.70	4.9	95.1	0.0	-1.18	0.65	0.77	2.25	3.5	0.003	0.63	0.0	0.04	15.68	0.00	2.158	5.46	0.28	3.6	96.4	0.0	0.80	0.86	0.72	0.83	2.30	14763	2079	6	0	0	3	0	logfile
✔	5WFE	8827	2023-07-07	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.85	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.75	0.0	0.04	24.02	0.00	2.068	17.06	0.60	4.2	95.8	0.0	0.36	2.54	0.84	0.75	1.62	15523	1447	12	210	0	0	0	logfile
✔	8EYX	28723	2023-07-10	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.004	0.68	0.0	0.04	12.85	0.00	2.136	23.75	0.06	9.1	90.7	0.2	-1.42	1.18	0.89	0.83	—	14298	1773	6	0	0	0	0	logfile
✔	8D49	27178	2023-07-05	2022-06-01	3.2	3.92	3.27	3.7	0.009	0.84	3.0	0.05	15.30	0.01	2.098	6.45	1.14	4.0	95.9	0.1	-0.72	0.86	0.85	3.17	3.7	0.003	0.52	0.0	0.04	15.82	0.00	2.234	5.09	0.00	2.6	97.4	0.0	1.20	1.93	0.83	0.82	2.70	9281	1072	2	26	0	0	0	logfile
✔	7PFE	13373	2023-07-08	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.84	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.67	0.0	0.04	29.59	0.00	2.112	17.93	0.00	2.9	97.1	0.0	0.87	1.61	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	7Y89	33682	2023-07-04	2022-06-23	3.02	3.56	3.18	3.4	0.007	0.76	0.0	0.05	14.49	0.00	2.092	11.46	1.29	8.2	91.5	0.4	-1.39	0.69	0.85	2.94	3.4	0.003	0.63	0.0	0.04	15.92	0.00	2.134	7.91	0.54	5.1	94.8	0.1	-0.17	0.50	0.65	0.81	1.97	8641	1110	5	0	0	0	0	logfile
✔	7Mi9	23843	2023-07-08	2021-04-16	3.89	3.92	—	3.7	0.006	0.91	1.0	0.05	24.01	0.01	2.008	38.70	2.08	13.2	86.3	0.6	-3.37	0.70	0.48	0.55	3.6	0.006	0.89	0.0	0.05	24.25	0.01	1.965	30.73	0.62	10.8	89.2	0.0	-2.43	2.22	0.75	0.62	1.18	15924	1554	10	170	0	0	0	logfile

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