Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K63	22687	2022-07-04	2020-09-18	3.03	3.30	—	3.2	0.004	0.62	0.0	0.04	26.88	0.00	2.158	7.07	0.09	2.0	98.0	0.0	0.98	0.76	0.80	3.33	3.2	0.003	0.58	0.0	0.03	27.49	0.00	2.199	8.15	0.18	2.8	97.2	0.0	1.76	0.41	0.78	0.83	2.87	18330	1298	13	394	0	0	0	logfile
✔	7KXY	23067	2022-07-03	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.44	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.88	0.0	0.05	14.67	0.01	2.083	26.47	0.00	18.8	81.1	0.1	-4.97	0.60	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	6XSS	22305	2022-07-03	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.015	1.65	1.0	0.04	17.18	0.01	2.065	21.16	0.36	1.6	98.4	0.0	2.61	1.33	0.75	0.80	0.22	8048	1040	4	0	0	0	0	logfile
✔	6XZQ	10665	2022-07-03	2020-02-05	3.6	4.18	3.53	3.7	0.005	0.64	0.0	0.04	15.64	0.01	1.924	5.97	1.26	5.0	95.0	0.0	-2.44	0.89	0.79	1.95	3.8	0.003	0.59	0.0	0.04	15.94	0.00	1.942	9.41	0.10	4.7	95.3	0.0	-0.42	0.78	0.90	0.82	1.91	56888	3492	8	19	0	0	28480	logfile
✔	6Z3Y	11066	2022-07-03	2020-05-22	3.51	3.78	3.53	3.6	0.002	0.52	0.0	0.04	11.75	0.00	2.269	9.16	1.68	5.6	94.4	0.0	0.09	0.59	0.70	0.69	3.6	0.004	0.89	0.0	0.05	15.16	0.01	2.094	17.43	0.61	8.7	91.3	0.0	-0.83	0.71	0.59	0.71	1.14	6131	771	2	0	0	0	0	logfile
✔	7K5X	22683	2022-07-04	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.42	0.00	2.211	5.82	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.2	0.004	0.62	0.0	0.04	27.67	0.01	2.220	6.90	1.91	2.4	97.6	0.0	1.51	1.40	0.79	0.86	2.49	18291	1296	13	394	0	0	0	logfile
✔	7DBP	30161	2022-07-04	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.004	0.63	0.0	0.03	30.20	0.00	2.194	24.63	0.00	3.2	96.8	0.0	1.13	2.52	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	6ZLU	11274	2022-07-07	2020-07-01	4.2	3.89	—	3.8	0.008	0.99	0.0	0.06	16.86	0.01	1.417	18.50	0.09	4.6	94.9	0.4	-2.05	0.64	0.48	—	3.8	0.005	0.83	0.0	0.05	13.90	0.00	2.071	16.56	0.00	5.0	94.9	0.1	-0.91	2.87	0.77	0.72	—	21700	2718	4	0	0	0	0	logfile
✔	6WL0	21814	2022-07-03	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6XJA	22204	2022-07-04	2020-06-23	4.0	4.11	—	3.7	0.023	1.93	31.0	0.11	18.02	0.01	0.468	73.82	18.37	6.1	92.2	1.7	-1.93	0.69	0.54	—	3.8	0.013	1.24	1.0	0.05	16.90	0.01	1.514	34.25	0.17	10.0	89.8	0.2	-2.62	2.54	0.76	0.68	—	16441	2156	5	0	0	0	0	logfile
✔	7BTX	30190	2022-07-03	2020-04-03	2.8	2.99	—	3.0	0.008	1.09	2.0	0.06	14.93	0.01	2.280	4.59	0.26	8.1	91.1	0.7	-4.94	0.68	0.86	4.33	3.0	0.003	0.67	0.0	0.04	16.81	0.01	2.178	9.03	2.03	8.2	91.5	0.2	-0.66	0.54	0.67	0.87	3.88	10168	1268	4	0	0	0	0	logfile
✔	6ZM1	11277	2022-07-06	2020-07-01	4.7	4.57	—	4.3	0.007	0.91	0.0	0.06	16.16	0.01	0.828	14.15	0.55	6.5	93.3	0.2	-3.15	0.76	0.60	—	4.3	0.003	0.71	0.0	0.04	13.67	0.00	2.125	15.36	0.00	4.7	95.2	0.0	-0.76	1.20	0.86	0.79	—	22543	2844	4	0	0	0	0	logfile
✔	7AZP	11950	2022-07-05	2020-11-17	3.5	3.84	3.46	3.6	0.004	0.62	0.0	0.04	13.41	0.00	2.210	10.65	0.71	3.3	96.7	0.0	-2.29	0.89	0.86	0.66	3.6	0.004	0.67	0.0	0.04	14.80	0.00	2.198	11.85	0.13	3.3	96.7	0.0	0.89	1.63	0.88	0.85	1.05	27391	3675	7	0	0	0	0	logfile
✔	6ZLT	11273	2022-07-05	2020-07-01	3.9	3.82	—	3.8	0.005	0.82	0.0	0.05	15.48	0.01	2.198	6.11	0.98	8.0	92.0	0.0	-4.15	0.80	0.79	2.28	3.8	0.003	0.65	0.0	0.04	16.17	0.00	2.155	10.26	0.20	5.7	94.3	0.0	-1.53	0.55	0.81	0.81	1.94	23386	2970	4	0	0	0	0	logfile
✔	7BY0	30239	2022-07-03	2020-04-21	4.5	5.50	—	4.5	0.008	0.97	0.0	0.05	30.91	0.01	1.950	11.25	0.15	3.1	96.9	0.0	-3.59	0.92	0.87	—	4.5	0.005	0.74	0.0	0.04	30.78	0.01	2.039	25.02	0.00	5.6	94.4	0.0	-0.56	1.30	0.92	0.86	—	12693	868	12	286	0	0	0	logfile
✔	7ANZ	11835	2022-07-04	2020-10-13	3.6	2.50	—	3.7	0.003	0.77	0.0	0.05	15.89	0.00	2.277	4.54	0.31	6.5	93.4	0.2	-5.88	0.77	0.74	1.50	3.7	0.008	0.93	0.0	0.04	17.70	0.00	2.100	11.44	0.68	6.9	93.1	0.0	-0.78	0.66	0.78	0.76	1.20	16751	2041	4	0	0	0	0	logfile
✔	6ZMS	11300	2022-07-03	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.020	1.12	0.0	0.04	15.82	0.01	2.018	6.21	0.14	7.2	92.4	0.4	-2.00	1.77	0.35	0.84	3.47	12570	818	4	0	0	0	6173	logfile
✔	6Z3Z	11067	2022-07-03	2020-05-22	3.19	3.90	—	3.6	0.003	0.62	0.0	0.04	13.78	0.00	2.198	8.96	0.31	6.4	93.6	0.0	-0.26	0.62	0.69	0.75	3.7	0.010	1.06	0.0	0.04	15.74	0.01	2.225	16.13	0.46	7.7	92.3	0.0	0.03	0.66	0.63	0.72	0.90	6115	769	2	0	0	0	0	logfile
✔	7L0S	23102	2022-07-03	2020-12-12	4.5	4.35	4.13	4.2	0.008	1.34	2.0	0.08	13.52	0.01	2.107	9.77	1.39	6.0	94.0	0.0	-3.19	0.61	0.63	—	4.2	0.004	0.78	0.0	0.04	13.21	0.00	2.147	19.49	0.00	3.8	96.2	0.0	-0.05	3.56	0.64	0.74	—	7906	1001	5	0	0	0	0	logfile
✔	7JGF	22325	2022-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.69	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile

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