Table showing results for January 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QG2	4545	2021-01-07	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.66	7.64	13.2	83.4	3.4	-1.88	0.58	0.38	—	4.5	0.005	0.86	0.0	0.05	15.44	0.00	1.851	22.34	0.00	11.5	87.9	0.6	-2.15	1.14	0.71	0.59	—	38664	4961	16	0	0	0	0	logfile
✔	6PUo	20478	2021-01-07	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.30	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.003	0.61	0.0	0.04	12.73	0.00	2.229	7.61	0.00	6.1	93.8	0.1	0.40	1.08	0.77	0.85	3.06	37804	5208	4	0	0	0	0	logfile
✔	6GC0	4379	2021-01-06	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.44	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	4.0	0.005	0.69	0.0	0.04	15.30	0.01	1.960	20.93	0.00	10.9	89.0	0.1	-2.27	2.65	0.78	0.76	1.34	84138	2950	28	2848	0	0	0	logfile
✔	6N1R	9318	2021-01-07	2018-11-10	4.0	4.12	—	4.0	0.006	0.89	0.0	0.05	8.46	0.01	0.296	17.74	0.00	8.7	91.3	0.0	-2.90	0.80	0.71	—	4.0	0.003	0.60	0.0	0.04	11.08	0.00	2.152	13.22	0.00	5.2	94.8	0.0	0.86	0.84	0.81	0.75	—	46044	5796	12	0	0	0	0	logfile
✔	6CoZ	7545	2021-01-05	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.004	0.88	0.0	0.04	6.14	0.00	2.319	9.28	0.00	17.9	82.1	0.0	-2.45	1.69	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	5LKi	4068	2021-01-08	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	38.47	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.73	0.0	0.04	13.14	0.00	2.104	12.65	0.02	6.4	93.2	0.3	0.55	0.84	0.62	0.76	1.58	55415	7135	5	0	0	0	0	logfile
✔	5LKH	4068	2021-01-07	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.004	0.80	0.0	0.04	13.69	0.00	2.079	27.03	0.02	7.3	92.7	0.0	-1.08	2.53	0.50	0.50	0.28	37345	4740	5	0	0	0	0	logfile
✔	6R69	4733	2021-01-05	2019-03-26	3.65	4.14	3.57	3.7	0.005	0.90	0.0	0.04	14.42	0.01	2.191	12.95	0.15	9.8	89.8	0.4	-3.99	0.75	0.76	0.73	3.8	0.003	0.81	0.0	0.04	13.73	0.01	2.145	11.95	0.07	7.3	92.7	0.0	0.61	0.94	0.76	0.81	0.97	12541	1629	10	0	0	0	0	logfile
✔	6R6B	4734	2021-01-05	2019-03-26	3.5	4.29	3.51	3.9	0.010	1.36	1.0	0.07	12.49	0.01	1.771	6.90	1.97	8.6	91.1	0.4	-5.15	0.70	0.70	2.25	3.9	0.003	0.88	0.0	0.04	12.98	0.00	2.093	13.85	0.00	6.8	93.1	0.1	0.11	4.26	0.73	0.84	0.95	11416	1452	10	0	0	0	0	logfile
✔	3J9G	2699	2021-01-10	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.93	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	3.1	0.004	0.68	0.0	0.04	14.32	0.01	2.084	9.80	0.06	2.9	96.9	0.1	0.63	1.20	0.42	0.80	2.54	132930	16710	60	0	0	0	0	logfile
✔	5WFE	8827	2021-01-06	2017-07-11	3.64	4.04	—	3.8	0.004	0.66	0.0	0.04	22.67	0.00	1.891	14.72	0.09	4.6	95.3	0.1	-1.79	0.80	0.67	1.90	3.8	0.004	0.71	0.0	0.04	23.02	0.00	2.093	16.04	0.00	3.5	96.5	0.0	0.65	2.32	0.83	0.74	1.59	15523	1447	12	210	0	0	0	logfile
✔	6GBZ	4378	2021-01-06	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.80	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.007	0.82	0.0	0.04	15.83	0.01	2.013	22.62	0.04	12.1	87.7	0.2	-2.41	1.58	0.79	0.78	1.45	86401	3074	29	2908	0	0	0	logfile
✔	6GC7	4382	2021-01-08	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.55	0.0	0.03	14.83	0.00	1.982	18.98	0.14	7.8	92.1	0.1	-1.43	1.70	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6GC6	4381	2021-01-08	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.009	0.84	0.0	0.04	16.32	0.01	1.996	37.74	0.00	10.2	89.8	0.0	-2.55	2.23	0.91	0.86	—	61404	2118	19	2092	0	0	0	logfile
✔	6BX0	7301	2021-01-19	2017-12-15	3.79	4.07	—	4.0	0.010	1.28	180.0	0.08	11.39	0.01	1.342	41.95	2.59	4.5	95.3	0.2	-3.37	0.53	0.67	3.05	4.0	0.005	0.95	0.0	0.05	13.68	0.01	2.089	22.93	0.11	9.6	90.3	0.1	-2.68	0.87	0.68	0.82	2.70	259560	32100	60	0	0	0	0	logfile
✔	6HRF	0260	2021-01-05	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.006	0.80	0.0	0.05	14.46	0.00	2.270	6.57	0.25	6.7	93.3	0.0	-3.47	3.76	0.37	0.77	3.84	3522	462	6	0	0	0	0	logfile
✔	6BX1	7302	2021-01-20	2017-12-15	3.25	3.31	—	3.4	0.009	1.00	120.0	0.07	10.33	0.01	0.683	20.60	1.07	3.9	95.9	0.2	-2.14	0.71	0.87	5.49	3.4	0.006	0.79	0.0	0.05	13.68	0.00	1.994	14.00	0.16	5.1	94.8	0.2	-2.04	1.94	0.71	0.87	4.58	261180	32400	60	0	0	0	0	logfile
✔	6GC4	4380	2021-01-06	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.92	0.0	0.05	16.81	0.01	1.904	33.27	0.09	13.5	86.4	0.2	-2.75	1.69	0.82	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	3J9P	6267	2021-01-06	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	25.49	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.004	0.98	0.0	0.04	13.71	0.00	2.091	20.27	0.00	9.8	89.4	0.8	-1.57	1.27	0.73	0.79	—	16952	2240	4	0	0	0	0	logfile
✔	6ACK	9594	2021-01-06	2018-07-26	4.5	4.60	—	4.3	0.010	1.35	3.0	0.07	11.39	0.01	1.533	15.17	0.79	16.1	83.5	0.5	-4.81	0.80	0.72	—	4.3	0.003	0.74	0.0	0.05	12.22	0.00	2.044	19.20	0.00	11.4	88.3	0.2	-2.49	1.57	0.79	0.71	—	29715	3784	4	0	0	0	0	logfile

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