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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6iG9 | 9664 | 2023-02-22 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGJ | 11208 | 2023-02-20 | 2020-06-18 | 3.4 | 3.39 | 3.34 | 3.5 | 0.005 | 0.61 | 0.0 | 0.04 | 12.36 | 0.00 | 2.192 | 9.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.35 | 0.69 | 0.79 | 3.10 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.228 | 6.59 | 0.18 | 5.7 | 94.3 | 0.0 | -0.56 | 0.42 | 0.71 | 0.85 | 2.51 | 11555 | 1540 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DVW | 8919 | 2023-02-23 | 2018-06-25 | 4.3 | 4.35 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 11.88 | 0.01 | 1.840 | 5.62 | 0.87 | 15.9 | 83.7 | 0.4 | -5.79 | 0.68 | 0.80 | — | 4.3 | 0.004 | 0.80 | 0.0 | 0.04 | 13.27 | 0.00 | 2.102 | 12.09 | 0.00 | 14.6 | 85.1 | 0.3 | -1.90 | 0.87 | 0.67 | 0.80 | — | 21004 | 2576 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-02-19 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NT6 | 12584 | 2023-02-25 | 2021-03-09 | 4.3 | 4.34 | 3.99 | 3.3 | 0.012 | 2.07 | 0.0 | 0.15 | 8.75 | 0.01 | 2.119 | 1.13 | 0.00 | 4.0 | 95.6 | 0.3 | -2.44 | 0.72 | 0.76 | — | 3.3 | 0.002 | 0.62 | 0.0 | 0.05 | 8.09 | 0.00 | 2.161 | 2.67 | 0.00 | 4.4 | 95.6 | 0.0 | 1.97 | 0.64 | 0.71 | 0.71 | — | 24128 | 5582 | 17 | 90 | 0 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2023-02-23 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 4.99 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.95 | 0.00 | 2.155 | 10.44 | 0.55 | 5.9 | 94.1 | 0.0 | -1.05 | 1.71 | 0.64 | 0.85 | 2.00 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZH0 | 14716 | 2023-02-17 | 2022-04-05 | 3.2 | 3.63 | 3.07 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 13.97 | 0.01 | 2.191 | 14.02 | 0.24 | 6.0 | 94.0 | 0.0 | 1.08 | 0.65 | 0.75 | 3.58 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 16.34 | 0.00 | 2.220 | 13.89 | 0.73 | 5.5 | 94.3 | 0.2 | 1.04 | 0.51 | 0.67 | 0.77 | 2.84 | 3869 | 495 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKM | 10828 | 2023-02-19 | 2020-04-06 | 3.1 | 3.19 | 2.97 | 3.2 | 0.009 | 1.07 | 0.0 | 0.06 | 11.10 | 0.01 | 2.256 | 4.12 | 0.00 | 3.0 | 97.0 | 0.0 | -4.68 | 0.68 | 0.86 | 4.14 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.163 | 9.05 | 0.00 | 2.7 | 97.3 | 0.0 | 0.97 | 1.08 | 0.69 | 0.88 | 2.54 | 10434 | 1357 | 10 | 0 | 0 | 8 | 0 | logfile |
✔ | 6ZGG | 11205 | 2023-02-25 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 11.39 | 0.00 | 2.111 | 11.42 | 0.36 | 5.9 | 94.0 | 0.0 | -0.97 | 1.78 | 0.87 | 0.83 | 1.19 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DV3 | 8914 | 2023-02-22 | 2018-06-22 | 4.1 | 4.29 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 12.83 | 0.01 | 1.837 | 8.62 | 5.67 | 5.2 | 94.8 | 0.0 | -4.68 | 0.63 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 12.62 | 0.00 | 2.023 | 10.79 | 0.02 | 3.7 | 96.3 | 0.0 | -1.65 | 0.84 | 0.63 | 0.82 | — | 57975 | 7500 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F8V | 31493 | 2023-02-17 | 2021-07-02 | 3.3 | 2.62 | — | 3.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.10 | 0.01 | 2.253 | 7.08 | 0.00 | 4.1 | 95.9 | 0.0 | -1.49 | 0.53 | 0.65 | 1.98 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.150 | 13.09 | 0.28 | 4.1 | 95.9 | 0.0 | -0.72 | 1.12 | 0.53 | 0.68 | 1.26 | 6601 | 848 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E0F | 30931 | 2023-02-16 | 2021-01-27 | 3.02 | 3.18 | — | 3.5 | 0.016 | 0.99 | 0.0 | 0.07 | 15.88 | 0.00 | 2.341 | 9.76 | 0.00 | 12.8 | 87.2 | 0.0 | -5.10 | 0.39 | 0.81 | 5.04 | 3.4 | 0.004 | 0.64 | 0.0 | 0.05 | 16.57 | 0.00 | 2.397 | 4.15 | 0.49 | 7.8 | 92.2 | 0.0 | -3.39 | 1.23 | 0.39 | 0.80 | 3.92 | 2022 | 294 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DR6 | 30824 | 2023-02-23 | 2020-12-26 | 4.1 | 4.22 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 7.81 | 0.00 | 2.196 | 10.04 | 0.12 | 4.9 | 94.9 | 0.1 | -2.74 | 0.68 | 0.63 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 13.22 | 0.00 | 2.079 | 15.90 | 0.06 | 3.7 | 96.2 | 0.0 | 0.18 | 2.26 | 0.73 | 0.72 | — | 59957 | 7661 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R8C | 24315 | 2023-02-18 | 2021-06-26 | 3.7 | 4.19 | — | 4.1 | 0.002 | 0.49 | 0.0 | 0.04 | 12.82 | 0.00 | 2.073 | 6.73 | 0.21 | 4.8 | 95.2 | 0.0 | -1.63 | 0.68 | 0.85 | 1.76 | 4.1 | 0.002 | 0.66 | 0.0 | 0.04 | 14.79 | 0.00 | 2.156 | 8.76 | 0.21 | 5.1 | 94.9 | 0.0 | 1.17 | 1.05 | 0.71 | 0.87 | 1.83 | 8538 | 1090 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-02-26 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AWA | 11928 | 2023-02-17 | 2020-11-06 | 3.5 | 3.83 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.22 | 0.00 | 2.126 | 6.77 | 0.00 | 5.8 | 94.2 | 0.0 | -2.52 | 0.57 | 0.81 | 2.14 | 3.7 | 0.002 | 0.52 | 0.0 | 0.04 | 15.06 | 0.00 | 2.163 | 6.96 | 0.00 | 3.7 | 96.3 | 0.0 | -0.59 | 1.17 | 0.54 | 0.80 | 1.51 | 5310 | 328 | 1 | 0 | 0 | 0 | 2703 | logfile |
✔ | 5FN1 | 3236 | 2023-02-23 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.08 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 7D46 | 30571 | 2023-02-25 | 2020-09-22 | 4.0 | 4.10 | — | 4.1 | 0.008 | 0.93 | 0.0 | 0.05 | 15.19 | 0.00 | 2.116 | 18.69 | 0.42 | 17.5 | 82.4 | 0.1 | -5.10 | 0.77 | 0.82 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.05 | 16.77 | 0.00 | 2.095 | 15.17 | 0.77 | 9.7 | 90.3 | 0.0 | -1.88 | 1.58 | 0.76 | 0.81 | — | 26636 | 3481 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BNQ | 12232 | 2023-02-20 | 2021-01-22 | 4.1 | 4.35 | 4.09 | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 14.89 | 0.01 | 2.293 | 4.99 | 0.32 | 5.4 | 94.6 | 0.0 | -3.83 | 0.78 | 0.86 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.096 | 9.90 | 0.00 | 5.8 | 94.2 | 0.0 | -1.47 | 1.21 | 0.78 | 0.85 | — | 11617 | 1488 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V6B | 21067 | 2023-02-19 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.33 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 16.91 | 0.00 | 2.139 | 6.54 | 0.20 | 3.4 | 96.6 | 0.1 | -0.41 | 0.59 | 0.53 | 0.83 | 0.72 | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |