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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QG2 | 4545 | 2021-01-07 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.66 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.38 | — | 4.5 | 0.005 | 0.86 | 0.0 | 0.05 | 15.44 | 0.00 | 1.851 | 22.34 | 0.00 | 11.5 | 87.9 | 0.6 | -2.15 | 1.14 | 0.71 | 0.59 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PUo | 20478 | 2021-01-07 | 2019-07-18 | 3.3 | 3.94 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.05 | 13.53 | 0.01 | 2.305 | 5.30 | 0.35 | 7.4 | 92.5 | 0.2 | -3.47 | 0.74 | 0.80 | 2.49 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 12.73 | 0.00 | 2.229 | 7.61 | 0.00 | 6.1 | 93.8 | 0.1 | 0.40 | 1.08 | 0.77 | 0.85 | 3.06 | 37804 | 5208 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC0 | 4379 | 2021-01-06 | 2018-04-16 | 3.8 | 4.10 | — | 4.0 | 0.002 | 0.52 | 0.0 | 0.03 | 12.29 | 0.00 | 2.283 | 3.44 | 0.04 | 5.9 | 94.0 | 0.1 | -4.24 | 0.72 | 0.66 | 1.32 | 4.0 | 0.005 | 0.69 | 0.0 | 0.04 | 15.30 | 0.01 | 1.960 | 20.93 | 0.00 | 10.9 | 89.0 | 0.1 | -2.27 | 2.65 | 0.78 | 0.76 | 1.34 | 84138 | 2950 | 28 | 2848 | 0 | 0 | 0 | logfile |
✔ | 6N1R | 9318 | 2021-01-07 | 2018-11-10 | 4.0 | 4.12 | — | 4.0 | 0.006 | 0.89 | 0.0 | 0.05 | 8.46 | 0.01 | 0.296 | 17.74 | 0.00 | 8.7 | 91.3 | 0.0 | -2.90 | 0.80 | 0.71 | — | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 11.08 | 0.00 | 2.152 | 13.22 | 0.00 | 5.2 | 94.8 | 0.0 | 0.86 | 0.84 | 0.81 | 0.75 | — | 46044 | 5796 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2021-01-05 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.004 | 0.88 | 0.0 | 0.04 | 6.14 | 0.00 | 2.319 | 9.28 | 0.00 | 17.9 | 82.1 | 0.0 | -2.45 | 1.69 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKi | 4068 | 2021-01-08 | 2016-07-22 | 3.46 | 3.72 | — | 3.5 | 0.013 | 1.24 | 5.0 | 0.06 | 10.71 | 0.01 | 0.579 | 38.47 | 0.18 | 7.7 | 91.7 | 0.6 | -4.39 | 0.65 | 0.79 | 2.37 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 13.14 | 0.00 | 2.104 | 12.65 | 0.02 | 6.4 | 93.2 | 0.3 | 0.55 | 0.84 | 0.62 | 0.76 | 1.58 | 55415 | 7135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2021-01-07 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 85.51 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 4.4 | 0.004 | 0.80 | 0.0 | 0.04 | 13.69 | 0.00 | 2.079 | 27.03 | 0.02 | 7.3 | 92.7 | 0.0 | -1.08 | 2.53 | 0.50 | 0.50 | 0.28 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R69 | 4733 | 2021-01-05 | 2019-03-26 | 3.65 | 4.14 | 3.57 | 3.7 | 0.005 | 0.90 | 0.0 | 0.04 | 14.42 | 0.01 | 2.191 | 12.95 | 0.15 | 9.8 | 89.8 | 0.4 | -3.99 | 0.75 | 0.76 | 0.73 | 3.8 | 0.003 | 0.81 | 0.0 | 0.04 | 13.73 | 0.01 | 2.145 | 11.95 | 0.07 | 7.3 | 92.7 | 0.0 | 0.61 | 0.94 | 0.76 | 0.81 | 0.97 | 12541 | 1629 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R6B | 4734 | 2021-01-05 | 2019-03-26 | 3.5 | 4.29 | 3.51 | 3.9 | 0.010 | 1.36 | 1.0 | 0.07 | 12.49 | 0.01 | 1.771 | 6.90 | 1.97 | 8.6 | 91.1 | 0.4 | -5.15 | 0.70 | 0.70 | 2.25 | 3.9 | 0.003 | 0.88 | 0.0 | 0.04 | 12.98 | 0.00 | 2.093 | 13.85 | 0.00 | 6.8 | 93.1 | 0.1 | 0.11 | 4.26 | 0.73 | 0.84 | 0.95 | 11416 | 1452 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9G | 2699 | 2021-01-10 | 2015-01-16 | 3.5 | 2.75 | — | 3.5 | 0.011 | 1.34 | 0.0 | 0.06 | 10.86 | 0.01 | 2.365 | 1.93 | 0.00 | 3.6 | 95.7 | 0.7 | -0.80 | 0.40 | 0.65 | 0.85 | 3.1 | 0.004 | 0.68 | 0.0 | 0.04 | 14.32 | 0.01 | 2.084 | 9.80 | 0.06 | 2.9 | 96.9 | 0.1 | 0.63 | 1.20 | 0.42 | 0.80 | 2.54 | 132930 | 16710 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WFE | 8827 | 2021-01-06 | 2017-07-11 | 3.64 | 4.04 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 22.67 | 0.00 | 1.891 | 14.72 | 0.09 | 4.6 | 95.3 | 0.1 | -1.79 | 0.80 | 0.67 | 1.90 | 3.8 | 0.004 | 0.71 | 0.0 | 0.04 | 23.02 | 0.00 | 2.093 | 16.04 | 0.00 | 3.5 | 96.5 | 0.0 | 0.65 | 2.32 | 0.83 | 0.74 | 1.59 | 15523 | 1447 | 12 | 210 | 0 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2021-01-06 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.80 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.007 | 0.82 | 0.0 | 0.04 | 15.83 | 0.01 | 2.013 | 22.62 | 0.04 | 12.1 | 87.7 | 0.2 | -2.41 | 1.58 | 0.79 | 0.78 | 1.45 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2021-01-08 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.003 | 0.55 | 0.0 | 0.03 | 14.83 | 0.00 | 1.982 | 18.98 | 0.14 | 7.8 | 92.1 | 0.1 | -1.43 | 1.70 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6GC6 | 4381 | 2021-01-08 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.009 | 0.84 | 0.0 | 0.04 | 16.32 | 0.01 | 1.996 | 37.74 | 0.00 | 10.2 | 89.8 | 0.0 | -2.55 | 2.23 | 0.91 | 0.86 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6BX0 | 7301 | 2021-01-19 | 2017-12-15 | 3.79 | 4.07 | — | 4.0 | 0.010 | 1.28 | 180.0 | 0.08 | 11.39 | 0.01 | 1.342 | 41.95 | 2.59 | 4.5 | 95.3 | 0.2 | -3.37 | 0.53 | 0.67 | 3.05 | 4.0 | 0.005 | 0.95 | 0.0 | 0.05 | 13.68 | 0.01 | 2.089 | 22.93 | 0.11 | 9.6 | 90.3 | 0.1 | -2.68 | 0.87 | 0.68 | 0.82 | 2.70 | 259560 | 32100 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2021-01-05 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 7.82 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.4 | 0.006 | 0.80 | 0.0 | 0.05 | 14.46 | 0.00 | 2.270 | 6.57 | 0.25 | 6.7 | 93.3 | 0.0 | -3.47 | 3.76 | 0.37 | 0.77 | 3.84 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BX1 | 7302 | 2021-01-20 | 2017-12-15 | 3.25 | 3.31 | — | 3.4 | 0.009 | 1.00 | 120.0 | 0.07 | 10.33 | 0.01 | 0.683 | 20.60 | 1.07 | 3.9 | 95.9 | 0.2 | -2.14 | 0.71 | 0.87 | 5.49 | 3.4 | 0.006 | 0.79 | 0.0 | 0.05 | 13.68 | 0.00 | 1.994 | 14.00 | 0.16 | 5.1 | 94.8 | 0.2 | -2.04 | 1.94 | 0.71 | 0.87 | 4.58 | 261180 | 32400 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2021-01-06 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.92 | 0.0 | 0.05 | 16.81 | 0.01 | 1.904 | 33.27 | 0.09 | 13.5 | 86.4 | 0.2 | -2.75 | 1.69 | 0.82 | 0.80 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2021-01-06 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.85 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 25.49 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.2 | 0.004 | 0.98 | 0.0 | 0.04 | 13.71 | 0.00 | 2.091 | 20.27 | 0.00 | 9.8 | 89.4 | 0.8 | -1.57 | 1.27 | 0.73 | 0.79 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ACK | 9594 | 2021-01-06 | 2018-07-26 | 4.5 | 4.60 | — | 4.3 | 0.010 | 1.35 | 3.0 | 0.07 | 11.39 | 0.01 | 1.533 | 15.17 | 0.79 | 16.1 | 83.5 | 0.5 | -4.81 | 0.80 | 0.72 | — | 4.3 | 0.003 | 0.74 | 0.0 | 0.05 | 12.22 | 0.00 | 2.044 | 19.20 | 0.00 | 11.4 | 88.3 | 0.2 | -2.49 | 1.57 | 0.79 | 0.71 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |