Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iG9	9664	2023-02-22	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	6ZGJ	11208	2023-02-20	2020-06-18	3.4	3.39	3.34	3.5	0.005	0.61	0.0	0.04	12.36	0.00	2.192	9.66	0.00	6.3	93.7	0.0	-1.35	0.69	0.79	3.10	3.5	0.003	0.58	0.0	0.04	14.28	0.00	2.228	6.59	0.18	5.7	94.3	0.0	-0.56	0.42	0.71	0.85	2.51	11555	1540	5	0	0	0	0	logfile
✔	6DVW	8919	2023-02-23	2018-06-25	4.3	4.35	—	4.3	0.008	1.19	0.0	0.06	11.88	0.01	1.840	5.62	0.87	15.9	83.7	0.4	-5.79	0.68	0.80	—	4.3	0.004	0.80	0.0	0.04	13.27	0.00	2.102	12.09	0.00	14.6	85.1	0.3	-1.90	0.87	0.67	0.80	—	21004	2576	4	0	0	0	0	logfile
✘	6LBH	0869	2023-02-19	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9219	1236	6	0	0	0	0	logfile
✔	7NT6	12584	2023-02-25	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	6J0F	9763	2023-02-23	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	4.99	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.003	0.74	0.0	0.04	16.95	0.00	2.155	10.44	0.55	5.9	94.1	0.0	-1.05	1.71	0.64	0.85	2.00	19314	2472	12	0	0	0	0	logfile
✔	7ZH0	14716	2023-02-17	2022-04-05	3.2	3.63	3.07	3.5	0.004	0.72	0.0	0.04	13.97	0.01	2.191	14.02	0.24	6.0	94.0	0.0	1.08	0.65	0.75	3.58	3.5	0.003	0.68	0.0	0.04	16.34	0.00	2.220	13.89	0.73	5.5	94.3	0.2	1.04	0.51	0.67	0.77	2.84	3869	495	1	0	0	0	0	logfile
✔	6YKM	10828	2023-02-19	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.61	0.0	0.04	14.94	0.00	2.163	9.05	0.00	2.7	97.3	0.0	0.97	1.08	0.69	0.88	2.54	10434	1357	10	0	0	8	0	logfile
✔	6ZGG	11205	2023-02-25	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.005	0.73	0.0	0.04	11.39	0.00	2.111	11.42	0.36	5.9	94.0	0.0	-0.97	1.78	0.87	0.83	1.19	25096	3207	3	0	0	0	0	logfile
✔	6DV3	8914	2023-02-22	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.003	0.72	0.0	0.05	12.62	0.00	2.023	10.79	0.02	3.7	96.3	0.0	-1.65	0.84	0.63	0.82	—	57975	7500	15	0	0	0	0	logfile
✔	7F8V	31493	2023-02-17	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.08	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.63	0.0	0.04	16.03	0.00	2.150	13.09	0.28	4.1	95.9	0.0	-0.72	1.12	0.53	0.68	1.26	6601	848	5	0	0	0	0	logfile
✔	7E0F	30931	2023-02-16	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	7DR6	30824	2023-02-23	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.90	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	7R8C	24315	2023-02-18	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✘	7D44	30569	2023-02-26	2020-09-22	4.0	4.14	—	4.0	0.006	0.86	0.0	0.05	14.78	0.00	2.049	20.50	0.28	16.3	83.6	0.1	-5.25	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28391	3825	12	0	0	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	7D46	30571	2023-02-25	2020-09-22	4.0	4.10	—	4.1	0.008	0.93	0.0	0.05	15.19	0.00	2.116	18.69	0.42	17.5	82.4	0.1	-5.10	0.77	0.82	—	4.1	0.004	0.75	0.0	0.05	16.77	0.00	2.095	15.17	0.77	9.7	90.3	0.0	-1.88	1.58	0.76	0.81	—	26636	3481	10	0	0	0	0	logfile
✔	7BNQ	12232	2023-02-20	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.62	0.0	0.04	14.17	0.00	2.096	9.90	0.00	5.8	94.2	0.0	-1.47	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile
✔	6V6B	21067	2023-02-19	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	3.9	0.003	0.61	0.0	0.04	16.91	0.00	2.139	6.54	0.20	3.4	96.6	0.1	-0.41	0.59	0.53	0.83	0.72	9115	1111	2	0	0	0	0	logfile

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