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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KB5 | 22787 | 2023-07-05 | 2020-10-01 | 3.8 | 4.51 | 3.86 | 4.0 | 0.004 | 0.64 | 0.0 | 0.04 | 13.76 | 0.00 | 2.163 | 7.30 | 0.00 | 4.4 | 95.6 | 0.0 | -1.47 | 0.65 | 0.84 | 1.16 | 4.0 | 0.005 | 0.70 | 0.0 | 0.04 | 15.11 | 0.00 | 2.152 | 10.28 | 0.29 | 4.0 | 96.0 | 0.0 | 1.97 | 0.54 | 0.65 | 0.85 | 1.30 | 9777 | 1252 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SZ1 | 25559 | 2023-07-09 | 2021-11-25 | 3.4 | 4.37 | — | 3.5 | 0.005 | 0.79 | 0.0 | 0.05 | 14.47 | 0.00 | 2.092 | 10.94 | 1.65 | 14.5 | 85.3 | 0.2 | -4.74 | 0.85 | 0.75 | 1.55 | 3.6 | 0.003 | 0.70 | 0.0 | 0.05 | 15.22 | 0.00 | 2.105 | 13.49 | 0.17 | 11.7 | 88.2 | 0.1 | -2.54 | 2.26 | 0.90 | 0.84 | 1.34 | 10216 | 1322 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PFX | 13383 | 2023-07-08 | 2021-08-12 | 4.3 | 7.46 | — | 4.0 | 0.006 | 0.88 | 0.0 | 0.05 | 30.33 | 0.01 | 2.234 | 6.11 | 0.00 | 1.3 | 98.7 | 0.0 | 0.30 | 0.91 | 0.85 | — | 4.0 | 0.004 | 0.66 | 0.0 | 0.04 | 30.58 | 0.00 | 2.131 | 19.18 | 0.00 | 2.8 | 97.2 | 0.0 | 1.72 | 1.57 | 0.91 | 0.86 | — | 13880 | 843 | 11 | 354 | 0 | 0 | 0 | logfile |
✔ | 6WPK | 21863 | 2023-07-15 | 2020-04-27 | 3.3 | 3.38 | — | 3.3 | 0.018 | 1.13 | 0.0 | 0.04 | 15.34 | 0.00 | 2.277 | 10.97 | 0.65 | 7.8 | 92.2 | 0.0 | -3.81 | 0.75 | 0.84 | 2.02 | 3.3 | 0.003 | 0.65 | 0.0 | 0.04 | 16.56 | 0.00 | 2.373 | 6.62 | 0.39 | 6.1 | 93.9 | 0.0 | 0.26 | 0.44 | 0.74 | 0.84 | 1.52 | 33229 | 4376 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XGR | 33187 | 2023-07-04 | 2022-04-06 | 2.6 | 3.38 | 2.47 | 3.2 | 0.004 | 0.71 | 0.0 | 0.04 | 18.88 | 0.00 | 2.259 | 8.70 | 2.17 | 6.3 | 93.7 | 0.0 | -0.28 | 0.52 | 0.75 | 2.35 | 3.2 | 0.002 | 0.61 | 0.0 | 0.03 | 19.07 | 0.00 | 2.203 | 7.19 | 1.96 | 5.8 | 94.2 | 0.0 | 2.24 | 1.25 | 0.55 | 0.83 | 2.09 | 4340 | 546 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LYA | 23590 | 2023-07-08 | 2021-03-06 | 2.91 | 3.17 | 2.99 | 3.2 | 0.007 | 0.67 | 0.0 | 0.04 | 27.51 | 0.00 | 1.325 | 3.62 | 0.16 | 2.5 | 97.5 | 0.0 | -1.91 | 0.70 | 0.84 | 2.92 | 3.2 | 0.004 | 0.58 | 0.0 | 0.03 | 28.05 | 0.00 | 2.152 | 3.99 | 1.25 | 2.1 | 97.9 | 0.0 | 2.09 | 0.27 | 0.73 | 0.86 | 2.77 | 12098 | 767 | 10 | 293 | 0 | 0 | 0 | logfile |
✔ | 8EZ0 | 28725 | 2023-07-09 | 2022-10-29 | 3.7 | 4.09 | 3.78 | 3.9 | 0.004 | 0.63 | 0.0 | 0.04 | 15.91 | 0.00 | 2.130 | 13.69 | 0.12 | 7.3 | 92.7 | 0.0 | -1.65 | 0.85 | 0.82 | 2.02 | 3.9 | 0.014 | 0.72 | 0.0 | 0.04 | 16.52 | 0.01 | 2.158 | 13.94 | 0.24 | 7.3 | 92.7 | 0.0 | -1.49 | 1.15 | 0.84 | 0.82 | 1.91 | 14640 | 1815 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7STH | 25428 | 2023-07-08 | 2021-11-13 | 3.5 | 4.00 | — | 3.7 | 0.003 | 0.56 | 0.0 | 0.04 | 13.68 | 0.00 | 2.200 | 9.57 | 0.38 | 7.5 | 92.4 | 0.2 | -1.32 | 0.85 | 0.83 | 2.05 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 15.02 | 0.00 | 2.160 | 11.21 | 0.13 | 6.2 | 93.8 | 0.1 | -1.13 | 0.39 | 0.85 | 0.82 | 2.24 | 14010 | 1736 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7STi | 25429 | 2023-07-08 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.75 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.04 | 13.42 | 0.00 | 2.110 | 26.65 | 0.00 | 9.2 | 90.6 | 0.2 | -1.29 | 1.61 | 0.89 | 0.84 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZZY | 15041 | 2023-07-04 | 2022-05-26 | 3.3 | 4.29 | 3.23 | 3.7 | 0.002 | 0.47 | 0.0 | 0.04 | 16.51 | 0.00 | 2.238 | 2.10 | 0.31 | 2.8 | 97.2 | 0.0 | 1.09 | 0.82 | 0.78 | 2.57 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 17.47 | 0.00 | 2.247 | 9.31 | 0.00 | 3.0 | 97.0 | 0.0 | 1.66 | 1.83 | 0.89 | 0.83 | 2.44 | 8784 | 1104 | 16 | 0 | 0 | 24 | 0 | logfile |
✔ | 7PF6 | 13369 | 2023-07-08 | 2021-08-11 | 4.0 | 4.89 | — | 3.7 | 0.006 | 0.99 | 0.0 | 0.06 | 29.66 | 0.01 | 2.268 | 7.80 | 0.00 | 1.9 | 98.1 | 0.0 | -0.75 | 0.87 | 0.76 | — | 3.7 | 0.005 | 0.82 | 0.0 | 0.06 | 30.43 | 0.00 | 2.025 | 24.30 | 0.58 | 4.1 | 95.9 | 0.0 | 0.26 | 1.75 | 0.87 | 0.78 | — | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 8H8B | 34541 | 2023-07-04 | 2022-10-22 | 3.16 | 3.37 | 3.20 | 3.3 | 0.001 | 0.46 | 0.0 | 0.04 | 13.00 | 0.00 | 2.226 | 6.42 | 0.67 | 6.3 | 93.7 | 0.0 | -2.99 | 0.70 | 0.76 | 2.74 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.26 | 0.00 | 2.256 | 6.60 | 0.34 | 9.5 | 90.5 | 0.0 | -1.76 | 0.61 | 0.74 | 0.85 | 3.67 | 8344 | 1027 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YoU | 33987 | 2023-07-09 | 2022-08-02 | 3.41 | 3.21 | 3.36 | 3.3 | 0.008 | 1.00 | 0.0 | 0.06 | 10.41 | 0.01 | 2.288 | 5.17 | 0.34 | 6.9 | 93.1 | 0.0 | -3.52 | 0.78 | 0.83 | 2.72 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 14.48 | 0.00 | 2.165 | 11.03 | 0.20 | 4.7 | 95.3 | 0.0 | 0.56 | 1.67 | 0.79 | 0.84 | 1.63 | 18266 | 2321 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oGL | 12883 | 2023-07-07 | 2021-05-06 | 3.4 | 3.47 | 3.42 | 3.5 | 0.016 | 1.97 | 20.0 | 0.12 | 13.71 | 0.01 | 2.082 | 6.91 | 1.70 | 4.9 | 95.1 | 0.0 | -1.18 | 0.65 | 0.77 | 2.25 | 3.5 | 0.003 | 0.63 | 0.0 | 0.04 | 15.68 | 0.00 | 2.158 | 5.46 | 0.28 | 3.6 | 96.4 | 0.0 | 0.80 | 0.86 | 0.72 | 0.83 | 2.30 | 14763 | 2079 | 6 | 0 | 0 | 3 | 0 | logfile |
✔ | 5WFE | 8827 | 2023-07-07 | 2017-07-11 | 3.64 | 4.04 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 22.67 | 0.00 | 1.891 | 14.85 | 0.09 | 4.6 | 95.3 | 0.1 | -1.79 | 0.80 | 0.67 | 1.90 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 24.02 | 0.00 | 2.068 | 17.06 | 0.60 | 4.2 | 95.8 | 0.0 | 0.36 | 2.54 | 0.84 | 0.75 | 1.62 | 15523 | 1447 | 12 | 210 | 0 | 0 | 0 | logfile |
✔ | 8EYX | 28723 | 2023-07-10 | 2022-10-29 | 4.5 | 4.99 | 4.61 | 4.1 | 0.006 | 0.76 | 1.0 | 0.05 | 12.87 | 0.00 | 1.857 | 33.88 | 1.18 | 9.7 | 89.7 | 0.6 | -1.73 | 0.86 | 0.74 | — | 4.1 | 0.004 | 0.68 | 0.0 | 0.04 | 12.85 | 0.00 | 2.136 | 23.75 | 0.06 | 9.1 | 90.7 | 0.2 | -1.42 | 1.18 | 0.89 | 0.83 | — | 14298 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D49 | 27178 | 2023-07-05 | 2022-06-01 | 3.2 | 3.92 | 3.27 | 3.7 | 0.009 | 0.84 | 3.0 | 0.05 | 15.30 | 0.01 | 2.098 | 6.45 | 1.14 | 4.0 | 95.9 | 0.1 | -0.72 | 0.86 | 0.85 | 3.17 | 3.7 | 0.003 | 0.52 | 0.0 | 0.04 | 15.82 | 0.00 | 2.234 | 5.09 | 0.00 | 2.6 | 97.4 | 0.0 | 1.20 | 1.93 | 0.83 | 0.82 | 2.70 | 9281 | 1072 | 2 | 26 | 0 | 0 | 0 | logfile |
✔ | 7PFE | 13373 | 2023-07-08 | 2021-08-11 | 4.4 | 5.35 | — | 3.9 | 0.007 | 0.94 | 0.0 | 0.05 | 29.84 | 0.01 | 2.264 | 6.87 | 0.00 | 1.5 | 98.5 | 0.0 | -0.43 | 0.91 | 0.85 | — | 3.9 | 0.004 | 0.67 | 0.0 | 0.04 | 29.59 | 0.00 | 2.112 | 17.93 | 0.00 | 2.9 | 97.1 | 0.0 | 0.87 | 1.61 | 0.91 | 0.85 | — | 13880 | 843 | 11 | 354 | 0 | 0 | 0 | logfile |
✔ | 7Y89 | 33682 | 2023-07-04 | 2022-06-23 | 3.02 | 3.56 | 3.18 | 3.4 | 0.007 | 0.76 | 0.0 | 0.05 | 14.49 | 0.00 | 2.092 | 11.46 | 1.29 | 8.2 | 91.5 | 0.4 | -1.39 | 0.69 | 0.85 | 2.94 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.92 | 0.00 | 2.134 | 7.91 | 0.54 | 5.1 | 94.8 | 0.1 | -0.17 | 0.50 | 0.65 | 0.81 | 1.97 | 8641 | 1110 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Mi9 | 23843 | 2023-07-08 | 2021-04-16 | 3.89 | 3.92 | — | 3.7 | 0.006 | 0.91 | 1.0 | 0.05 | 24.01 | 0.01 | 2.008 | 38.70 | 2.08 | 13.2 | 86.3 | 0.6 | -3.37 | 0.70 | 0.48 | 0.55 | 3.6 | 0.006 | 0.89 | 0.0 | 0.05 | 24.25 | 0.01 | 1.965 | 30.73 | 0.62 | 10.8 | 89.2 | 0.0 | -2.43 | 2.22 | 0.75 | 0.62 | 1.18 | 15924 | 1554 | 10 | 170 | 0 | 0 | 0 | logfile |