Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6o9R	0663	2021-08-27	2019-03-14	2.75	3.02	—	3.0	0.010	0.88	0.0	0.06	9.38	0.01	2.204	10.63	0.22	1.7	98.3	0.0	-1.28	0.77	0.88	6.11	3.0	0.005	0.64	0.0	0.04	14.47	0.00	2.138	8.09	2.03	2.1	97.9	0.0	-0.06	0.56	0.76	0.89	5.54	247980	31200	60	0	0	0	0	logfile
✔	6V1G	21011	2021-08-30	2019-11-20	2.98	3.20	—	3.2	0.011	0.85	0.0	0.05	9.89	0.01	2.044	13.32	0.22	2.1	97.9	0.0	-1.96	0.73	0.83	5.32	3.2	0.005	0.63	0.0	0.04	15.44	0.00	2.090	8.74	2.54	2.3	97.7	0.0	-0.78	0.59	0.73	0.85	4.50	249900	31200	120	120	0	0	0	logfile
✔	6ACJ	9593	2021-08-10	2018-07-26	4.2	4.37	—	4.2	0.010	1.34	2.0	0.07	11.28	0.01	1.731	12.01	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.003	0.76	0.0	0.05	12.49	0.00	2.035	16.90	0.00	12.8	87.0	0.2	-2.73	3.07	0.75	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6MRU	9213	2021-08-08	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	5URF	8598	2021-08-23	2017-02-10	2.9	3.16	—	3.2	0.011	1.55	0.0	0.07	11.07	0.01	2.000	31.36	0.45	13.0	85.6	1.4	-3.45	0.69	0.83	4.34	3.2	0.004	1.08	0.0	0.05	15.82	0.01	2.086	22.04	1.50	16.5	81.8	1.7	-2.51	0.74	0.65	0.82	3.71	243720	30600	60	0	0	0	0	logfile
✔	5o09	3726	2021-08-10	2017-05-16	3.6	3.66	—	3.7	0.014	1.49	32.0	0.10	13.27	0.01	0.180	18.36	1.36	6.3	92.8	0.8	-4.52	0.53	0.60	0.71	3.6	0.009	0.97	1.0	0.05	16.70	0.01	1.509	22.56	0.27	5.5	94.5	0.0	-0.90	1.63	0.61	0.76	1.39	67424	8648	40	16	0	0	0	logfile
✔	6MRW	9214	2021-08-09	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.010	0.88	2.0	0.03	12.02	0.00	2.102	6.81	0.03	2.1	97.9	0.0	6.08	0.67	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6H05	0108	2021-08-11	2018-07-06	2.9	3.15	—	3.5	0.016	1.10	0.0	0.07	9.74	0.01	0.426	17.80	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.2	0.008	1.06	0.0	0.05	15.53	0.01	1.620	23.84	1.82	5.3	94.7	0.0	-1.71	2.15	0.62	0.54	1.19	44544	5664	24	0	0	0	0	logfile
✔	6JXR	9895	2021-08-07	2019-04-24	3.7	3.95	—	3.9	0.007	1.02	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.72	0.0	0.04	15.80	0.01	2.047	12.11	0.32	7.0	92.8	0.2	-0.41	1.74	0.68	0.80	2.17	8437	1073	8	0	0	0	0	logfile
✔	3J9P	6267	2021-08-08	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	25.49	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.005	1.00	0.0	0.05	13.86	0.01	2.059	25.19	0.00	10.0	89.1	0.9	-1.88	1.24	0.74	0.81	—	16952	2240	4	0	0	0	0	logfile
✔	6V1T	21017	2021-08-27	2019-11-21	3.39	3.79	—	3.8	0.010	0.94	0.0	0.06	9.90	0.00	2.083	22.10	0.96	3.5	96.3	0.2	-2.68	0.61	0.78	3.93	3.8	0.003	0.66	0.0	0.04	15.19	0.00	2.032	11.72	0.53	3.1	96.9	0.0	-1.23	0.69	0.61	0.79	2.95	248280	31260	60	0	0	0	0	logfile
✔	6ACD	9589	2021-08-09	2018-07-26	3.9	4.22	—	4.0	0.007	1.05	0.0	0.06	9.72	0.01	1.629	8.02	0.25	14.3	85.1	0.5	-4.47	0.79	0.77	1.25	4.0	0.003	0.74	0.0	0.05	13.80	0.00	2.117	15.36	0.36	11.3	88.4	0.3	-2.25	1.62	0.79	0.77	1.12	24845	3187	3	0	0	0	0	logfile
✔	6PUo	20478	2021-08-11	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.30	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.005	0.68	0.0	0.04	14.31	0.00	2.232	7.17	0.38	7.0	92.9	0.1	0.23	1.07	0.79	0.88	2.49	37804	5208	4	0	0	0	0	logfile
✔	6PYH	20524	2021-08-08	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.13	0.55	18.1	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.003	0.63	0.0	0.04	13.69	0.00	2.167	12.81	0.00	8.0	92.0	0.0	-2.18	0.68	0.83	0.81	—	13187	1648	3	0	0	0	0	logfile
✔	6QG2	4545	2021-08-11	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.66	7.64	13.2	83.4	3.4	-1.88	0.58	0.38	—	4.5	0.003	0.73	0.0	0.04	15.40	0.00	2.141	15.42	0.00	9.3	90.1	0.6	-1.91	1.14	0.70	0.57	—	38664	4961	16	0	0	0	0	logfile
✔	6MRT	9212	2021-08-08	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	6ACK	9594	2021-08-10	2018-07-26	4.5	4.60	—	4.3	0.010	1.35	3.0	0.07	11.39	0.01	1.533	15.17	0.79	16.1	83.5	0.5	-4.81	0.80	0.72	—	4.3	0.004	0.82	0.0	0.05	12.53	0.01	2.027	25.99	0.00	14.5	85.3	0.3	-2.97	1.59	0.80	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6QG0	4543	2021-08-10	2019-01-10	4.15	4.29	4.10	4.3	0.009	1.40	20.0	0.08	18.07	0.00	0.775	5.27	5.91	10.0	87.6	2.4	-3.14	0.56	0.68	—	4.2	0.009	1.05	1.0	0.05	15.12	0.01	1.987	19.23	0.02	10.3	89.1	0.6	-1.94	1.75	0.58	0.64	—	36980	4742	16	0	0	0	0	logfile
✔	3J1B	5391	2021-08-09	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.67	4.08	6.4	90.1	3.5	-3.28	0.67	0.52	—	4.8	0.003	0.78	0.0	0.05	15.00	0.01	2.175	16.33	0.00	5.2	94.0	0.8	1.13	2.24	0.75	0.63	—	62992	8304	16	0	0	0	0	logfile
✔	5US7	8604	2021-08-23	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.007	1.14	2.0	0.05	16.87	0.01	1.775	21.84	2.73	15.5	82.5	2.0	-2.68	1.89	0.72	0.85	3.78	242340	30360	60	0	0	0	0	logfile

• Page 1 of 276
• next →