Table showing results for April 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RD6	4807	2021-04-01	2019-04-12	2.75	2.89	2.74	2.8	0.006	0.82	0.0	0.05	13.67	0.01	2.306	4.49	0.38	2.5	97.5	0.0	-3.09	0.62	0.85	3.36	2.8	0.005	0.61	0.0	0.04	12.65	0.00	2.231	6.35	0.00	2.4	97.6	0.0	2.02	1.54	0.62	0.86	3.27	7758	1035	10	0	0	32	0	logfile
✔	5o5B	3747	2021-04-29	2017-06-01	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	353520	44820	240	0	0	0	0	logfile
✔	6CFZ	7469	2021-04-06	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	0.81	0.0	0.04	11.85	0.01	1.616	25.76	0.00	10.5	89.4	0.2	2.76	1.89	0.32	0.40	—	204102	12937	170	0	0	0	102272	logfile
✔	6HU4	0272	2021-04-09	2018-10-05	2.64	2.72	2.70	4.0	0.007	0.80	0.0	0.05	9.69	0.01	0.270	12.05	0.37	3.4	96.1	0.5	-2.63	0.31	0.22	0.10	2.7	0.003	0.68	0.0	0.04	12.22	0.01	2.024	9.48	0.37	2.9	96.6	0.5	2.77	0.73	0.73	0.88	3.67	289500	36180	480	0	0	0	0	logfile
✔	6AD1	9605	2021-04-12	2018-07-28	4.2	4.30	—	4.2	0.009	1.07	0.0	0.06	9.87	0.01	1.269	11.93	0.00	9.8	90.2	0.0	-4.84	0.77	0.89	—	4.2	0.003	0.64	0.0	0.04	12.22	0.00	2.000	6.14	0.00	6.6	93.4	0.0	-2.39	0.69	0.78	0.89	—	299640	38220	180	0	0	0	0	logfile
✔	6N4V	0344	2021-04-12	2018-11-20	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	236760	30960	120	0	0	0	0	logfile
✔	6LB0	0866	2021-04-04	2019-11-13	3.6	3.79	—	3.7	0.006	0.86	0.0	0.05	13.62	0.01	0.919	7.46	0.00	6.5	93.5	0.0	-3.90	0.74	0.89	4.20	3.7	0.004	0.62	0.0	0.04	12.41	0.00	2.072	6.99	0.00	6.4	93.6	0.0	-1.66	0.51	0.74	0.89	4.19	148140	19440	60	0	0	0	0	logfile
✔	6SD5	10149	2021-04-02	2019-07-26	3.1	3.26	3.11	3.2	0.006	0.71	0.0	0.04	15.04	0.00	2.321	8.86	1.39	8.3	91.7	0.0	-5.48	0.67	0.85	3.48	3.3	0.003	0.61	0.0	0.04	14.31	0.00	2.287	9.00	0.00	2.4	97.6	0.0	-1.31	1.98	0.68	0.85	3.88	14212	1936	22	0	0	0	0	logfile
✔	3J06	5185	2021-04-05	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	78.71	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.004	0.89	0.0	0.04	18.06	0.01	2.180	15.72	0.77	6.8	91.5	1.7	-3.01	1.31	0.56	0.78	2.52	62916	7595	98	147	0	0	0	logfile
✔	6FU8	4319	2021-04-01	2018-02-26	3.2	4.42	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.68	0.0	0.04	13.81	0.00	2.188	8.06	0.00	7.5	91.2	1.2	-0.60	2.54	0.24	0.68	-0.23	1364	82	1	0	0	0	711	logfile
✔	6Y7C	10713	2021-04-02	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.44	1.0	0.06	18.61	0.01	0.193	10.31	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.011	0.82	0.0	0.04	18.06	0.01	1.987	31.53	0.04	14.3	85.5	0.1	-3.53	2.65	0.93	0.80	0.31	79690	5381	34	1735	0	0	0	logfile
✔	6VQi	21351	2021-04-01	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.005	0.74	0.0	0.04	5.75	0.00	2.190	7.55	0.00	9.0	90.9	0.1	-0.52	1.02	0.57	0.75	—	5278	1062	8	0	0	0	0	logfile
✔	6P4L	20252	2021-04-06	2019-05-28	3.1	3.24	—	3.3	0.009	0.89	0.0	0.05	14.28	0.01	0.565	16.89	0.00	8.4	91.3	0.3	-4.58	0.60	0.84	3.93	3.3	0.005	0.77	0.0	0.05	13.56	0.01	2.002	10.01	0.12	7.7	92.2	0.2	-1.44	0.66	0.60	0.85	3.74	274980	36060	180	0	0	0	0	logfile
✔	6P6F	20261	2021-04-06	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.005	0.89	0.0	0.05	13.97	0.01	2.266	20.39	0.00	1.7	98.3	0.0	-0.40	1.34	0.73	0.80	—	159840	21060	120	0	0	0	0	logfile
✔	6HTX	0271	2021-04-08	2018-10-05	2.66	4.15	2.68	2.5	0.009	0.89	0.0	0.06	9.60	0.01	1.458	17.49	0.00	3.3	96.4	0.3	-2.86	0.80	0.61	0.63	2.5	0.003	0.61	0.0	0.04	11.05	0.00	2.051	8.62	0.00	2.8	96.8	0.3	2.96	1.47	0.99	0.98	4.33	284520	35460	240	0	0	0	0	logfile
✔	6BUZ	7293	2021-04-02	2017-12-11	3.92	4.51	—	4.2	0.008	0.88	0.0	0.05	27.46	0.01	2.308	8.08	0.00	5.6	94.4	0.0	-5.03	0.85	0.86	3.06	4.2	0.004	0.69	0.0	0.04	27.94	0.00	2.081	16.52	0.00	5.0	95.0	0.0	0.10	1.01	0.84	0.85	2.09	12509	878	11	290	0	0	0	logfile
✔	6SD2	10146	2021-04-02	2019-07-26	3.1	3.07	—	3.1	0.009	0.88	0.0	0.05	16.06	0.00	2.355	7.23	5.56	7.3	92.7	0.0	-4.71	0.68	0.85	4.01	3.2	0.002	0.60	0.0	0.04	16.48	0.00	2.256	10.90	0.00	2.4	97.6	0.0	1.40	1.08	0.69	0.85	3.58	13566	1848	21	0	0	0	0	logfile
✔	6U95	20693	2021-04-12	2019-09-06	2.56	4.18	2.62	2.5	0.008	0.82	60.0	0.05	13.57	0.00	1.933	14.33	0.22	1.9	97.9	0.2	-2.81	0.70	0.85	5.00	2.5	0.002	0.52	0.0	0.04	13.17	0.00	2.196	4.44	0.00	1.0	99.0	0.0	-0.27	3.66	0.80	0.94	5.27	247500	31140	60	0	0	0	0	logfile
✔	6SKK	10226	2021-04-01	2019-08-15	3.6	3.76	3.63	3.7	0.003	0.61	0.0	0.04	12.96	0.00	2.319	7.50	0.18	1.7	98.3	0.0	-1.14	0.70	0.75	1.70	3.7	0.004	0.68	0.0	0.04	14.56	0.01	2.073	11.76	0.18	3.7	96.3	0.0	0.53	0.75	0.69	0.76	1.48	10328	1320	6	0	0	0	0	logfile
✔	6SLU	10240	2021-04-01	2019-08-20	4.7	4.88	4.61	4.8	0.003	0.64	0.0	0.04	9.23	0.00	1.454	9.68	0.18	1.3	98.7	0.0	-1.03	0.69	0.77	—	4.7	0.004	0.88	0.0	0.05	13.52	0.01	2.162	18.25	0.00	3.6	96.4	0.0	-0.27	1.82	0.72	0.81	—	10336	1320	6	0	0	0	0	logfile

• ← previous
• Page 3 of 238
• next →