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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6LBH | 0869 | 2023-02-19 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2023-02-22 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZGJ | 11208 | 2023-02-20 | 2020-06-18 | 3.4 | 3.39 | 3.34 | 3.5 | 0.005 | 0.61 | 0.0 | 0.04 | 12.36 | 0.00 | 2.192 | 9.66 | 0.00 | 6.3 | 93.7 | 0.0 | -1.35 | 0.69 | 0.79 | 3.10 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 14.28 | 0.00 | 2.228 | 6.59 | 0.18 | 5.7 | 94.3 | 0.0 | -0.56 | 0.42 | 0.71 | 0.85 | 2.51 | 11555 | 1540 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DV3 | 8914 | 2023-02-22 | 2018-06-22 | 4.1 | 4.29 | — | 4.3 | 0.008 | 1.19 | 0.0 | 0.06 | 12.83 | 0.01 | 1.837 | 8.62 | 5.67 | 5.2 | 94.8 | 0.0 | -4.68 | 0.63 | 0.69 | — | 4.3 | 0.003 | 0.72 | 0.0 | 0.05 | 12.62 | 0.00 | 2.023 | 10.79 | 0.02 | 3.7 | 96.3 | 0.0 | -1.65 | 0.84 | 0.63 | 0.82 | — | 57975 | 7500 | 15 | 0 | 0 | 0 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-02-26 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2023-02-23 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.86 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.003 | 0.73 | 0.0 | 0.05 | 11.70 | 0.00 | 2.011 | 17.70 | 0.01 | 3.4 | 96.6 | 0.0 | -0.29 | 1.89 | 0.81 | 0.73 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-02-23 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.005 | 0.87 | 0.0 | 0.04 | 16.79 | 0.01 | 1.856 | 24.08 | 1.08 | 13.3 | 85.7 | 1.0 | -1.33 | 2.15 | 0.41 | 0.75 | 0.99 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 6V6B | 21067 | 2023-02-19 | 2019-12-04 | 3.8 | 3.96 | — | 3.9 | 0.005 | 0.55 | 0.0 | 0.04 | 14.36 | 0.00 | 2.211 | 5.33 | 0.00 | 5.1 | 94.9 | 0.0 | -5.29 | 0.54 | 0.84 | 1.85 | 3.9 | 0.003 | 0.61 | 0.0 | 0.04 | 16.91 | 0.00 | 2.139 | 6.54 | 0.20 | 3.4 | 96.6 | 0.1 | -0.41 | 0.59 | 0.53 | 0.83 | 0.72 | 9115 | 1111 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BNQ | 12232 | 2023-02-20 | 2021-01-22 | 4.1 | 4.35 | 4.09 | 4.2 | 0.005 | 0.80 | 0.0 | 0.05 | 14.89 | 0.01 | 2.293 | 4.99 | 0.32 | 5.4 | 94.6 | 0.0 | -3.83 | 0.78 | 0.86 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 14.17 | 0.00 | 2.096 | 9.90 | 0.00 | 5.8 | 94.2 | 0.0 | -1.47 | 1.21 | 0.78 | 0.85 | — | 11617 | 1488 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7F8V | 31493 | 2023-02-17 | 2021-07-02 | 3.3 | 2.62 | — | 3.3 | 0.005 | 0.87 | 0.0 | 0.05 | 14.10 | 0.01 | 2.253 | 7.08 | 0.00 | 4.1 | 95.9 | 0.0 | -1.49 | 0.53 | 0.65 | 1.98 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.03 | 0.00 | 2.150 | 13.09 | 0.28 | 4.1 | 95.9 | 0.0 | -0.72 | 1.12 | 0.53 | 0.68 | 1.26 | 6601 | 848 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X26 | 32959 | 2023-02-17 | 2022-02-25 | 3.685 | 3.39 | — | 3.9 | 0.011 | 1.46 | 1.0 | 0.09 | 14.53 | 0.01 | 2.186 | 10.90 | 9.27 | 16.2 | 81.1 | 2.7 | -3.21 | 0.68 | 0.74 | 2.38 | 3.9 | 0.003 | 0.79 | 0.0 | 0.05 | 15.97 | 0.00 | 2.117 | 12.79 | 0.73 | 9.4 | 90.2 | 0.3 | -2.46 | 1.28 | 0.71 | 0.77 | 2.09 | 4828 | 641 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E0F | 30931 | 2023-02-16 | 2021-01-27 | 3.02 | 3.18 | — | 3.5 | 0.016 | 0.99 | 0.0 | 0.07 | 15.88 | 0.00 | 2.341 | 9.76 | 0.00 | 12.8 | 87.2 | 0.0 | -5.10 | 0.39 | 0.81 | 5.04 | 3.4 | 0.004 | 0.64 | 0.0 | 0.05 | 16.57 | 0.00 | 2.397 | 4.15 | 0.49 | 7.8 | 92.2 | 0.0 | -3.39 | 1.23 | 0.39 | 0.80 | 3.92 | 2022 | 294 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2023-02-23 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 4.99 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 16.95 | 0.00 | 2.155 | 10.44 | 0.55 | 5.9 | 94.1 | 0.0 | -1.05 | 1.71 | 0.64 | 0.85 | 2.00 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D45 | 30570 | 2023-02-26 | 2020-09-22 | 3.8 | 3.90 | — | 3.9 | 0.009 | 0.92 | 0.0 | 0.05 | 15.23 | 0.00 | 2.082 | 19.88 | 0.35 | 16.6 | 83.1 | 0.2 | -4.81 | 0.79 | 0.80 | 1.51 | 3.8 | 0.004 | 0.69 | 0.0 | 0.05 | 16.54 | 0.00 | 2.083 | 14.85 | 0.39 | 8.2 | 91.7 | 0.1 | -1.74 | 1.57 | 0.78 | 0.78 | 1.20 | 27529 | 3659 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DR6 | 30824 | 2023-02-23 | 2020-12-26 | 4.1 | 4.22 | — | 4.2 | 0.002 | 0.55 | 0.0 | 0.04 | 7.81 | 0.00 | 2.196 | 10.04 | 0.12 | 4.9 | 94.9 | 0.1 | -2.74 | 0.68 | 0.63 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.05 | 13.22 | 0.00 | 2.079 | 15.90 | 0.06 | 3.7 | 96.2 | 0.0 | 0.18 | 2.26 | 0.73 | 0.72 | — | 59957 | 7661 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WRG | 6679 | 2023-02-22 | 2016-12-01 | 4.3 | 4.45 | — | 4.3 | 0.007 | 1.37 | 0.0 | 0.07 | 12.06 | 0.01 | 2.191 | 9.91 | 0.53 | 18.0 | 81.4 | 0.7 | -5.05 | 0.66 | 0.69 | — | 4.3 | 0.003 | 1.08 | 0.0 | 0.05 | 12.10 | 0.00 | 2.000 | 18.84 | 0.00 | 16.9 | 83.0 | 0.1 | -3.25 | 1.51 | 0.67 | 0.75 | — | 16317 | 2208 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKM | 10828 | 2023-02-19 | 2020-04-06 | 3.1 | 3.19 | 2.97 | 3.2 | 0.009 | 1.07 | 0.0 | 0.06 | 11.10 | 0.01 | 2.256 | 4.12 | 0.00 | 3.0 | 97.0 | 0.0 | -4.68 | 0.68 | 0.86 | 4.14 | 3.2 | 0.003 | 0.61 | 0.0 | 0.04 | 14.94 | 0.00 | 2.163 | 9.05 | 0.00 | 2.7 | 97.3 | 0.0 | 0.97 | 1.08 | 0.69 | 0.88 | 2.54 | 10434 | 1357 | 10 | 0 | 0 | 8 | 0 | logfile |
✔ | 6SSX | 10307 | 2023-02-17 | 2019-09-09 | 2.98 | 3.11 | — | 3.1 | 0.008 | 0.94 | 0.0 | 0.07 | 14.94 | 0.00 | 2.424 | 6.14 | 4.26 | 12.6 | 87.4 | 0.0 | -4.73 | 0.65 | 0.82 | 4.81 | 3.0 | 0.008 | 0.80 | 0.0 | 0.06 | 16.95 | 0.00 | 2.222 | 13.38 | 4.47 | 13.2 | 86.8 | 0.0 | -5.14 | 0.77 | 0.65 | 0.86 | 4.75 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S3i | 24825 | 2023-02-18 | 2021-09-07 | 2.51 | 2.95 | 2.29 | 2.8 | 0.002 | 0.44 | 0.0 | 0.04 | 13.63 | 0.00 | 2.088 | 5.73 | 0.00 | 2.1 | 97.9 | 0.0 | 1.36 | 0.80 | 0.87 | 3.90 | 2.8 | 0.003 | 0.50 | 0.0 | 0.04 | 16.13 | 0.00 | 2.094 | 5.73 | 1.15 | 1.8 | 98.2 | 0.0 | 1.82 | 0.93 | 0.76 | 0.88 | 3.50 | 8094 | 1023 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MR1 | 23953 | 2023-02-22 | 2021-05-07 | 4.2 | 4.74 | — | 4.6 | 0.003 | 0.78 | 0.0 | 0.05 | 14.91 | 0.01 | 2.237 | 5.72 | 0.00 | 5.5 | 94.5 | 0.0 | -1.78 | 0.85 | 0.84 | — | 4.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.81 | 0.00 | 2.159 | 12.60 | 0.00 | 7.5 | 92.4 | 0.0 | -0.59 | 0.33 | 0.85 | 0.84 | — | 18473 | 2316 | 3 | 0 | 0 | 0 | 0 | logfile |