Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6M0S	30035	2022-04-09	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	3.7	0.003	0.58	0.0	0.04	14.51	0.00	2.044	5.06	0.17	1.9	98.1	0.0	-0.07	1.34	0.75	0.80	1.57	44660	2909	15	0	0	0	22618	logfile
✔	7BWM	30233	2022-04-06	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.26	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.61	0.0	0.04	15.57	0.00	2.132	6.57	2.05	4.9	95.1	0.0	-0.79	1.13	0.77	0.85	3.39	9532	1219	1	0	0	0	0	logfile
✘	6ZY2	11547	2022-04-05	2020-07-30	3.6	3.75	—	3.7	0.003	0.66	0.0	0.04	11.67	0.00	2.308	2.92	0.18	3.9	96.1	0.0	-5.61	0.67	0.75	1.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15718	2091	12	0	0	0	0	logfile
✔	7DR6	30824	2022-04-05	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.005	0.84	0.0	0.05	13.63	0.01	2.047	17.87	0.08	4.4	95.5	0.1	-0.40	1.86	0.74	0.74	—	59957	7661	35	0	0	0	0	logfile
✔	7DD3	30643	2022-04-04	2020-10-27	3.2	3.57	—	3.6	0.012	1.06	1.0	0.06	11.80	0.01	2.357	4.43	2.31	5.3	94.5	0.1	-3.77	0.65	0.82	3.21	3.6	0.003	0.64	0.0	0.04	14.81	0.00	2.205	8.03	0.46	4.5	95.4	0.1	0.10	0.68	0.61	0.81	1.98	5929	726	3	9	0	0	0	logfile
✔	6ZRR	11383	2022-04-04	2020-07-14	4.0	4.04	3.78	4.3	0.015	1.20	0.0	0.06	13.24	0.00	2.189	28.46	0.00	5.0	95.0	0.0	-4.56	0.62	0.69	—	4.3	0.005	0.78	0.0	0.05	14.68	0.00	2.060	37.04	0.62	26.9	73.1	0.0	-5.23	1.54	0.65	0.76	—	5724	414	18	0	0	0	2664	logfile
✔	6LBA	0868	2022-04-05	2019-11-13	4.1	4.19	—	4.1	0.005	1.04	8.0	0.06	14.23	0.01	1.605	70.19	3.56	10.9	88.6	0.5	-2.46	0.76	0.78	—	4.1	0.003	0.77	0.0	0.04	14.49	0.00	2.099	15.54	0.00	7.8	92.2	0.0	0.16	1.67	0.77	0.79	—	14992	1864	4	0	0	0	0	logfile
✔	7BX7	30235	2022-04-04	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	6WYJ	21966	2022-04-04	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.004	0.61	0.0	0.04	14.39	0.00	2.257	5.25	0.96	1.5	98.5	0.0	1.66	0.59	0.64	0.80	1.50	2949	398	1	0	0	0	0	logfile
✔	7K7K	22701	2022-04-08	2020-09-23	3.56	3.71	—	3.7	0.009	0.92	0.0	0.05	15.87	0.01	1.827	16.18	1.39	7.7	92.3	0.0	-6.33	0.54	0.86	1.36	3.7	0.003	0.78	0.0	0.04	18.95	0.00	2.125	10.78	0.94	6.7	93.3	0.0	0.98	2.60	0.53	0.84	1.15	36204	4788	28	0	0	0	0	logfile
✔	7CRW	30458	2022-04-05	2020-08-14	3.18	3.39	—	3.2	0.005	0.73	1.0	0.05	13.49	0.00	2.202	9.30	0.60	5.9	93.9	0.1	-3.70	0.89	0.85	3.20	3.2	0.004	0.64	0.0	0.04	15.10	0.01	2.147	8.17	0.38	5.7	94.2	0.0	-0.99	0.47	0.89	0.86	3.12	16613	2057	4	0	0	0	0	logfile
✔	6XE9	22145	2022-04-06	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.22	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.005	0.67	0.0	0.04	14.61	0.00	2.020	29.35	0.10	6.6	93.4	0.0	0.49	1.45	0.92	0.83	—	22081	2949	6	0	0	0	0	logfile
✔	7DK4	30702	2022-04-08	2020-11-23	3.8	3.20	—	3.4	0.003	0.55	0.0	0.04	7.92	0.00	2.106	1.30	0.15	2.8	97.2	0.0	-3.26	0.58	0.47	1.13	3.1	0.013	1.19	4.0	0.05	14.80	0.01	1.951	20.94	0.38	6.7	93.3	0.0	-1.86	1.45	0.72	0.66	1.23	34707	4470	9	0	0	0	0	logfile
✔	7DMQ	30767	2022-04-04	2020-12-05	3.06	3.15	—	3.1	0.005	0.96	0.0	0.05	13.95	0.01	2.238	3.76	0.62	9.8	90.2	0.0	-5.19	0.70	0.73	2.74	3.1	0.004	0.68	0.0	0.04	16.28	0.00	2.110	9.93	0.62	10.8	89.2	0.0	-1.82	1.43	0.75	0.76	1.90	9444	937	3	88	0	0	0	logfile
✔	7JZZ	22585	2022-04-07	2020-09-02	3.2	3.30	—	3.3	0.010	0.98	0.0	0.05	16.10	0.01	2.209	6.01	0.61	7.1	92.9	0.0	-3.65	0.81	0.86	3.19	3.3	0.006	0.80	0.0	0.04	17.07	0.00	2.064	12.02	0.09	6.8	93.2	0.0	-0.59	0.44	0.79	0.85	2.66	24197	2978	12	61	0	0	0	logfile
✔	7D20	30552	2022-04-05	2020-09-15	3.0	3.72	—	3.6	0.009	0.81	0.0	0.06	28.76	0.00	1.752	12.74	0.00	5.2	94.8	0.0	-3.29	0.78	0.79	2.68	3.6	0.003	0.68	0.0	0.05	28.36	0.00	2.157	10.19	1.46	3.1	96.9	0.0	1.71	0.57	0.72	0.70	2.37	12836	914	11	272	0	0	0	logfile
✔	7JZW	22582	2022-04-07	2020-09-02	3.2	2.44	—	3.2	0.010	0.97	0.0	0.05	16.21	0.01	2.237	5.94	0.13	6.9	93.0	0.0	-3.86	0.85	0.84	3.35	3.2	0.004	0.68	0.0	0.04	16.97	0.00	2.087	10.98	0.13	5.4	94.6	0.0	-0.24	0.41	0.85	0.85	2.43	24266	2986	11	61	0	0	0	logfile
✔	7CZB	30508	2022-04-04	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.56	0.80	1.78	6304	776	4	0	0	0	0	logfile
✔	6UGH	20764	2022-04-05	2019-09-26	3.4	3.33	—	3.4	0.009	0.90	0.0	0.05	13.50	0.01	2.024	3.21	0.13	3.3	96.4	0.3	-2.50	0.53	0.74	2.98	3.4	0.003	0.61	0.0	0.04	15.72	0.00	2.025	8.40	0.80	4.0	95.9	0.1	-0.85	1.10	0.54	0.77	2.42	13690	895	2	0	0	0	6716	logfile
✔	7BTW	30189	2022-04-05	2020-04-03	2.9	3.04	—	3.1	0.008	1.12	3.0	0.06	18.16	0.01	1.556	6.99	9.60	8.0	91.6	0.4	-5.22	0.65	0.76	3.14	3.1	0.006	0.82	0.0	0.05	18.23	0.01	2.075	11.09	3.40	8.5	91.4	0.1	-1.74	0.75	0.66	0.80	2.94	10246	1280	4	0	0	0	0	logfile

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