Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6LBH	0869	2023-02-19	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9219	1236	6	0	0	0	0	logfile
✔	6iG9	9664	2023-02-22	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.003	0.66	0.0	0.04	5.17	0.00	2.218	2.46	0.00	9.7	90.3	0.0	0.91	1.56	0.87	0.72	—	17122	3386	1	0	0	0	0	logfile
✔	6ZGJ	11208	2023-02-20	2020-06-18	3.4	3.39	3.34	3.5	0.005	0.61	0.0	0.04	12.36	0.00	2.192	9.66	0.00	6.3	93.7	0.0	-1.35	0.69	0.79	3.10	3.5	0.003	0.58	0.0	0.04	14.28	0.00	2.228	6.59	0.18	5.7	94.3	0.0	-0.56	0.42	0.71	0.85	2.51	11555	1540	5	0	0	0	0	logfile
✔	6DV3	8914	2023-02-22	2018-06-22	4.1	4.29	—	4.3	0.008	1.19	0.0	0.06	12.83	0.01	1.837	8.62	5.67	5.2	94.8	0.0	-4.68	0.63	0.69	—	4.3	0.003	0.72	0.0	0.05	12.62	0.00	2.023	10.79	0.02	3.7	96.3	0.0	-1.65	0.84	0.63	0.82	—	57975	7500	15	0	0	0	0	logfile
✘	7D44	30569	2023-02-26	2020-09-22	4.0	4.14	—	4.0	0.006	0.86	0.0	0.05	14.78	0.00	2.049	20.50	0.28	16.3	83.6	0.1	-5.25	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28391	3825	12	0	0	0	0	logfile
✔	6KS8	0760	2023-02-23	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.05	11.70	0.00	2.011	17.70	0.01	3.4	96.6	0.0	-0.29	1.89	0.81	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	6V6B	21067	2023-02-19	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	3.9	0.003	0.61	0.0	0.04	16.91	0.00	2.139	6.54	0.20	3.4	96.6	0.1	-0.41	0.59	0.53	0.83	0.72	9115	1111	2	0	0	0	0	logfile
✔	7BNQ	12232	2023-02-20	2021-01-22	4.1	4.35	4.09	4.2	0.005	0.80	0.0	0.05	14.89	0.01	2.293	4.99	0.32	5.4	94.6	0.0	-3.83	0.78	0.86	—	4.2	0.003	0.62	0.0	0.04	14.17	0.00	2.096	9.90	0.00	5.8	94.2	0.0	-1.47	1.21	0.78	0.85	—	11617	1488	5	0	0	0	0	logfile
✔	7F8V	31493	2023-02-17	2021-07-02	3.3	2.62	—	3.3	0.005	0.87	0.0	0.05	14.10	0.01	2.253	7.08	0.00	4.1	95.9	0.0	-1.49	0.53	0.65	1.98	3.3	0.003	0.63	0.0	0.04	16.03	0.00	2.150	13.09	0.28	4.1	95.9	0.0	-0.72	1.12	0.53	0.68	1.26	6601	848	5	0	0	0	0	logfile
✔	7X26	32959	2023-02-17	2022-02-25	3.685	3.39	—	3.9	0.011	1.46	1.0	0.09	14.53	0.01	2.186	10.90	9.27	16.2	81.1	2.7	-3.21	0.68	0.74	2.38	3.9	0.003	0.79	0.0	0.05	15.97	0.00	2.117	12.79	0.73	9.4	90.2	0.3	-2.46	1.28	0.71	0.77	2.09	4828	641	3	0	0	0	0	logfile
✔	7E0F	30931	2023-02-16	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	6J0F	9763	2023-02-23	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	4.99	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.003	0.74	0.0	0.04	16.95	0.00	2.155	10.44	0.55	5.9	94.1	0.0	-1.05	1.71	0.64	0.85	2.00	19314	2472	12	0	0	0	0	logfile
✔	7D45	30570	2023-02-26	2020-09-22	3.8	3.90	—	3.9	0.009	0.92	0.0	0.05	15.23	0.00	2.082	19.88	0.35	16.6	83.1	0.2	-4.81	0.79	0.80	1.51	3.8	0.004	0.69	0.0	0.05	16.54	0.00	2.083	14.85	0.39	8.2	91.7	0.1	-1.74	1.57	0.78	0.78	1.20	27529	3659	11	0	0	0	0	logfile
✔	7DR6	30824	2023-02-23	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.04	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.77	0.0	0.05	13.22	0.00	2.079	15.90	0.06	3.7	96.2	0.0	0.18	2.26	0.73	0.72	—	59957	7661	35	0	0	0	0	logfile
✔	5WRG	6679	2023-02-22	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.08	0.0	0.05	12.10	0.00	2.000	18.84	0.00	16.9	83.0	0.1	-3.25	1.51	0.67	0.75	—	16317	2208	3	0	0	0	0	logfile
✔	6YKM	10828	2023-02-19	2020-04-06	3.1	3.19	2.97	3.2	0.009	1.07	0.0	0.06	11.10	0.01	2.256	4.12	0.00	3.0	97.0	0.0	-4.68	0.68	0.86	4.14	3.2	0.003	0.61	0.0	0.04	14.94	0.00	2.163	9.05	0.00	2.7	97.3	0.0	0.97	1.08	0.69	0.88	2.54	10434	1357	10	0	0	8	0	logfile
✔	6SSX	10307	2023-02-17	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.008	0.80	0.0	0.06	16.95	0.00	2.222	13.38	4.47	13.2	86.8	0.0	-5.14	0.77	0.65	0.86	4.75	4900	730	10	0	0	0	0	logfile
✔	7S3i	24825	2023-02-18	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.50	0.0	0.04	16.13	0.00	2.094	5.73	1.15	1.8	98.2	0.0	1.82	0.93	0.76	0.88	3.50	8094	1023	5	0	0	0	0	logfile
✔	7MR1	23953	2023-02-22	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.72	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.68	0.0	0.04	14.81	0.00	2.159	12.60	0.00	7.5	92.4	0.0	-0.59	0.33	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile

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