Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HMV	34903	2023-08-10	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.003	0.49	0.0	0.04	15.50	0.00	2.170	4.71	0.45	2.6	97.4	0.0	0.81	0.37	0.66	0.87	3.21	8127	1022	5	0	0	0	0	logfile
✔	8ADG	15362	2023-08-17	2022-07-08	3.0	3.31	3.06	3.3	0.006	0.62	0.0	0.04	14.03	0.00	1.941	3.67	0.00	4.0	96.0	0.0	0.24	0.64	0.82	3.73	3.3	0.003	0.51	0.0	0.04	15.23	0.00	1.375	3.11	1.11	4.0	96.0	0.0	0.35	0.90	0.60	0.83	3.53	23183	1506	6	0	0	0	11375	logfile
✔	5WQ8	6676	2023-08-10	2016-11-23	3.26	3.41	—	3.3	0.009	1.18	0.0	0.06	10.83	0.01	1.654	27.56	0.24	4.8	95.0	0.2	-2.76	0.72	0.83	2.86	3.3	0.003	0.65	0.0	0.05	14.43	0.00	2.173	10.95	0.29	3.2	96.6	0.2	0.01	1.47	0.71	0.83	1.72	56460	7440	15	0	0	0	0	logfile
✔	6XJV	22215	2023-08-22	2020-06-24	4.17	4.32	—	4.1	0.006	1.01	0.0	0.06	10.81	0.01	2.238	4.38	0.27	5.0	94.9	0.2	-3.26	0.71	0.75	—	4.1	0.003	0.71	0.0	0.04	13.04	0.00	2.167	14.41	0.00	4.9	95.1	0.1	0.05	1.32	0.73	0.79	—	29921	3649	20	0	0	0	0	logfile
✔	7YND	33959	2023-08-15	2022-07-30	3.29	3.46	3.34	3.4	0.007	0.78	1.0	0.05	17.06	0.01	2.213	8.16	1.46	10.5	89.2	0.2	-4.25	0.81	0.86	2.29	3.4	0.003	0.63	0.0	0.04	17.56	0.00	2.236	6.73	0.22	9.8	90.2	0.0	-1.55	1.14	0.83	0.89	2.10	18098	2115	3	38	0	0	0	logfile
✔	7B9F	12103	2023-08-12	2020-12-14	3.0	3.81	—	3.5	0.008	1.01	1.0	0.06	12.03	0.01	2.247	4.11	0.00	3.4	96.6	0.0	-0.11	0.61	0.82	2.32	3.5	0.004	0.80	0.0	0.05	15.11	0.00	2.159	11.29	2.37	3.3	96.7	0.0	1.39	0.57	0.61	0.83	1.58	11270	1475	5	0	0	0	0	logfile
✔	7Z1T	14452	2023-08-15	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	7LS5	23502	2023-08-24	2021-02-17	2.74	3.16	2.79	3.1	0.004	0.53	0.0	0.06	12.59	0.00	2.007	3.91	0.02	1.7	98.3	0.0	0.77	0.72	0.80	4.34	3.1	0.004	0.54	0.0	0.06	14.81	0.00	2.009	4.91	0.74	1.7	98.3	0.0	1.30	1.15	0.67	0.77	3.84	98042	6315	28	0	0	0	48895	logfile
✔	7YKS	33896	2023-08-15	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.58	0.00	2.059	8.61	1.28	4.7	95.3	0.0	-0.45	2.19	0.59	0.80	1.54	18984	2364	4	0	0	0	0	logfile
✘	7SL7	25193	2023-08-15	2021-10-22	3.1	3.35	—	3.4	0.002	0.56	0.0	0.04	13.08	0.00	2.149	8.91	0.24	5.5	94.2	0.3	-0.86	0.77	0.82	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14732	1826	10	0	0	0	0	logfile
✘	7WRL	32732	2023-08-09	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3251	419	3	0	0	0	0	logfile
✔	7WKA	32564	2023-08-21	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.7	0.005	0.81	0.0	0.05	13.97	0.00	2.073	18.03	0.91	4.6	95.4	0.1	-0.79	1.63	0.77	0.74	1.25	31353	4017	7	0	0	0	0	logfile
✔	7XCZ	33130	2023-08-14	2022-03-26	3.2	3.36	3.17	3.3	0.004	0.51	0.0	0.05	15.75	0.00	2.009	5.37	0.90	8.1	91.8	0.1	-3.76	0.72	0.82	3.54	3.3	0.003	0.56	0.0	0.05	15.99	0.00	1.910	5.43	0.00	6.5	93.4	0.1	-0.77	0.67	0.73	0.85	3.39	15836	1069	5	0	0	0	7747	logfile
✔	7WEE	32448	2023-08-09	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.005	0.77	0.0	0.05	15.45	0.00	2.086	13.21	0.54	10.4	89.6	0.0	-1.59	0.47	0.47	0.80	—	3350	429	3	0	0	0	0	logfile
✘	7JR7	22443	2023-08-14	2020-08-11	3.3	3.18	—	3.3	0.010	1.34	4.0	0.08	11.83	0.01	2.254	3.49	0.57	2.6	97.0	0.4	0.62	0.65	0.79	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15799	2020	6	0	0	0	0	logfile
✔	7E26	30952	2023-08-12	2021-02-04	2.29	2.97	—	2.9	0.009	0.93	0.0	0.06	14.05	0.01	2.312	2.69	1.19	1.5	98.5	0.0	-2.93	0.73	0.88	5.43	2.9	0.003	0.51	0.0	0.04	15.93	0.00	2.189	4.06	1.69	1.8	98.2	0.0	1.72	0.32	0.57	0.83	4.90	11360	1435	10	0	0	80	0	logfile
✔	7T10	25586	2023-08-10	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.76	0.00	2.268	2.39	0.73	2.3	97.7	0.0	1.52	0.91	0.64	0.83	3.88	8429	1146	9	0	0	5	0	logfile
✔	7BoJ	30130	2023-08-15	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.81	0.00	2.132	7.61	2.17	2.2	97.8	0.0	1.73	1.86	0.78	0.88	4.15	121500	15900	60	0	0	0	0	logfile
✔	7QD4	13906	2023-08-15	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	21.92	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.57	0.0	0.04	23.16	0.00	2.177	9.13	1.16	2.8	97.2	0.0	2.00	0.88	0.79	0.83	2.16	19118	1816	6	216	0	0	0	logfile
✔	6RJA	4901	2023-08-16	2019-04-26	3.0	3.11	—	3.1	0.005	0.86	0.0	0.05	14.79	0.01	2.314	2.75	0.23	5.8	94.2	0.0	-3.51	0.64	0.81	2.74	3.1	0.003	0.56	0.0	0.04	16.01	0.00	2.185	7.78	2.71	4.1	95.9	0.0	-0.05	1.02	0.67	0.86	2.30	20372	1996	8	194	0	0	0	logfile

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