Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J99	9783	2021-08-09	2019-01-22	4.1	4.24	—	4.2	0.008	0.97	1.0	0.05	26.76	0.01	2.204	7.71	0.00	8.0	92.0	0.0	-2.88	0.65	0.52	—	4.1	0.007	1.01	0.0	0.04	27.19	0.01	1.970	24.62	0.10	5.4	94.6	0.0	-0.82	2.28	0.78	0.79	—	15266	1164	12	289	0	0	0	logfile
✔	6GTC	0061	2021-08-08	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.011	1.17	1.0	0.04	18.40	0.00	2.052	19.14	0.17	9.2	90.8	0.0	-3.29	1.41	0.72	0.71	1.68	11931	1280	4	65	0	0	0	logfile
✔	6RWX	10045	2021-08-10	2019-06-06	3.55	3.70	3.34	3.6	0.009	0.89	0.0	0.06	9.10	0.01	2.192	3.26	0.00	8.3	91.7	0.0	-2.76	0.81	0.86	3.14	3.6	0.004	0.60	0.0	0.04	15.76	0.00	2.120	8.07	0.26	6.0	94.0	0.0	0.72	0.68	0.76	0.87	2.38	70968	8784	48	0	0	0	0	logfile
✔	6C9K	7437	2021-08-11	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.60	0.0	0.04	14.67	0.00	2.163	15.69	0.28	1.9	98.1	0.0	3.50	0.95	0.81	0.67	-0.02	37632	4923	24	0	0	0	0	logfile
✔	5UZ7	8623	2021-08-07	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.69	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.003	0.76	0.0	0.04	13.71	0.00	2.213	14.45	0.12	4.9	95.1	0.0	-0.23	1.43	0.67	0.78	—	7643	974	5	0	0	0	0	logfile
✘	6o1N	0593	2021-08-09	2019-02-21	2.9	3.21	—	3.8	0.011	1.37	12.0	0.07	11.02	0.01	1.856	9.06	1.51	6.4	93.1	0.5	-6.01	0.60	0.73	2.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19608	2448	4	0	0	0	0	logfile
✔	6MGV	9112	2021-08-07	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.63	0.0	0.04	14.03	0.01	2.116	7.27	0.28	3.3	96.7	0.0	1.51	2.13	0.69	0.84	2.65	10150	1268	2	0	0	0	0	logfile
✔	6oSM	20186	2021-08-07	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.007	1.22	0.0	0.07	15.32	0.00	2.228	25.45	1.46	28.3	71.7	0.0	-5.24	3.40	0.45	0.75	2.88	4100	600	10	0	0	0	0	logfile
✔	6RVX	10016	2021-08-07	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.008	1.05	0.0	0.04	15.47	0.01	2.171	12.08	0.10	4.9	95.1	0.0	-1.28	1.13	0.64	0.80	0.88	9627	1290	3	0	0	0	0	logfile
✔	6N2P	9332	2021-08-08	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.60	0.0	0.04	11.00	0.00	2.186	6.18	0.00	7.3	92.7	0.0	0.72	1.42	0.60	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6RVY	10018	2021-08-07	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.72	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.004	0.76	0.0	0.04	13.30	0.00	2.305	13.14	0.00	5.2	94.8	0.0	0.02	0.73	0.64	0.81	—	9627	1290	3	0	0	0	0	logfile
✔	3J9X	6310	2021-08-10	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.22	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.7	0.004	0.75	0.0	0.04	16.53	0.01	2.084	21.00	0.54	3.0	97.0	0.0	1.92	1.31	0.63	0.79	2.19	70702	7424	60	696	0	0	0	logfile
✔	6NPJ	0471	2021-08-07	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	6.43	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.71	0.0	0.04	17.34	0.00	2.272	9.64	0.15	6.8	93.2	0.0	-1.63	0.88	0.63	0.78	2.10	6186	768	2	0	0	0	0	logfile
✔	5V4S	8633	2021-08-08	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	2.99	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.61	0.0	0.04	10.49	0.00	2.215	15.41	0.00	2.9	97.1	0.0	3.19	1.02	0.63	0.76	—	10756	1548	4	0	0	0	0	logfile
✔	5ZBG	6911	2021-08-09	2018-02-11	4.36	4.83	—	4.5	0.005	0.70	0.0	0.04	13.89	0.00	2.258	7.44	4.79	7.0	92.7	0.3	-2.22	0.69	0.81	—	4.5	0.003	0.68	0.0	0.04	12.77	0.00	2.173	12.93	0.00	5.5	94.5	0.0	1.15	1.07	0.70	0.83	—	21260	2680	4	0	0	0	0	logfile
✔	6QoZ	4610	2021-08-08	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.14	5.13	6.0	93.1	0.9	-3.28	0.40	0.61	0.09	3.5	0.003	0.64	0.0	0.04	15.36	0.00	2.117	6.73	0.30	2.6	97.4	0.0	-1.35	1.89	0.48	0.86	3.18	17987	2307	9	0	0	0	0	logfile
✔	6SPF	10284	2021-08-11	2019-09-01	2.89	2.96	—	2.9	0.011	1.12	3.0	0.06	18.18	0.01	1.746	5.73	1.63	10.1	89.5	0.4	-4.79	0.71	0.75	2.75	2.9	0.006	0.73	1.0	0.04	18.00	0.01	1.725	12.99	2.58	9.8	90.1	0.1	-2.60	0.58	0.76	0.82	1.84	138296	5712	53	4392	0	0	0	logfile
✔	5iPK	8100	2021-08-22	2016-03-09	3.7	3.79	—	3.7	0.011	1.35	0.0	0.06	11.53	0.01	2.067	31.05	0.45	21.6	75.8	2.6	-4.98	0.77	0.76	2.94	3.7	0.006	1.14	0.0	0.05	16.41	0.01	1.936	25.40	0.99	22.8	75.0	2.2	-4.66	0.82	0.77	0.84	2.62	240540	30000	60	0	0	0	0	logfile
✔	6SFX	10162	2021-08-09	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	23.71	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.005	0.95	0.0	0.05	18.36	0.01	2.092	22.70	0.55	4.8	95.2	0.0	-0.90	1.55	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	6R9G	4770	2021-08-09	2019-04-03	3.7	3.76	—	3.6	0.003	0.87	1.0	0.05	9.85	0.01	2.307	4.63	0.33	8.0	91.9	0.1	-4.32	0.67	0.54	0.47	3.6	0.008	1.02	0.0	0.05	15.80	0.01	1.959	18.49	0.11	9.4	90.5	0.0	-1.68	1.29	0.73	0.64	0.60	25944	3421	7	0	0	0	0	logfile

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