Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KoG	22975	2021-10-04	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.77	0.0	0.04	16.78	0.00	2.136	11.24	0.05	0.5	99.5	0.0	3.04	1.91	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	6U20	20615	2021-10-22	2019-08-18	3.3	4.23	3.54	4.1	0.009	0.83	0.0	0.05	13.51	0.01	2.254	2.46	5.30	4.0	96.0	0.0	-3.26	0.72	0.72	0.76	4.0	0.004	0.72	0.0	0.04	16.20	0.00	2.027	11.69	0.46	3.9	96.1	0.0	-0.99	0.81	0.71	0.86	3.08	248160	31140	60	0	0	0	0	logfile
✔	6XZC	10658	2021-10-04	2020-02-03	3.37	3.56	3.37	3.6	0.004	0.63	0.0	0.04	12.50	0.01	2.323	2.10	3.06	1.7	98.3	0.0	-1.92	0.66	0.74	0.86	3.6	0.003	0.58	0.0	0.04	15.28	0.01	2.218	5.04	0.00	0.8	99.2	0.0	5.15	1.08	0.75	0.86	0.97	13279	1694	7	0	0	0	0	logfile
✔	6WU3	21904	2021-10-04	2020-05-04	3.16	3.62	3.40	3.5	0.008	0.60	0.0	0.04	15.89	0.00	2.057	8.95	6.27	8.4	91.6	0.0	-3.62	0.61	0.85	2.96	3.6	0.003	0.57	0.0	0.03	15.83	0.00	2.013	9.25	0.57	5.3	94.7	0.0	1.19	1.86	0.62	0.87	2.88	13610	890	2	0	0	0	6936	logfile
✘	6X0L	21978	2021-10-03	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.24	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8037	894	7	40	0	0	0	logfile
✔	6WZ5	21970	2021-10-04	2020-05-13	2.2	2.36	—	2.2	0.008	0.69	0.0	0.04	28.82	0.00	2.253	4.68	0.93	2.2	97.8	0.0	0.00	0.75	0.71	2.93	2.2	0.005	0.61	0.0	0.04	29.29	0.00	2.160	5.66	0.93	1.7	98.3	0.0	2.63	0.89	0.87	0.89	3.90	12443	774	10	306	0	0	0	logfile
✔	6WWZ	21950	2021-10-03	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.02	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.004	0.63	0.0	0.04	15.09	0.00	2.180	2.81	0.00	2.8	97.2	0.0	0.19	1.07	0.72	0.86	2.83	9450	1211	6	0	0	0	0	logfile
✔	6S6L	10103	2021-10-03	2019-07-03	3.1	2.99	2.95	2.9	0.014	1.12	0.0	0.07	9.31	0.01	2.263	5.39	0.16	5.3	94.7	0.0	-2.85	0.39	0.65	3.67	2.9	0.005	0.70	0.0	0.05	12.35	0.01	2.151	8.95	0.08	4.4	95.6	0.0	-0.80	0.59	0.40	0.67	3.00	11587	1510	3	0	0	0	0	logfile
✔	6U5J	20647	2021-10-03	2019-08-27	3.5	3.54	—	3.5	0.005	0.71	0.0	0.05	12.52	0.01	2.267	5.70	3.03	7.7	92.3	0.0	-5.32	0.58	0.84	2.67	3.5	0.006	0.75	0.0	0.04	15.86	0.00	1.606	11.93	0.13	6.7	93.3	0.0	-1.58	0.72	0.59	0.84	2.03	59616	7878	24	0	0	0	0	logfile
✔	6U5K	20648	2021-10-03	2019-08-27	3.5	3.54	—	3.5	0.005	0.78	0.0	0.05	12.14	0.01	2.210	5.85	3.00	7.0	93.0	0.0	-5.23	0.53	0.83	2.34	3.5	0.005	0.70	0.0	0.05	14.98	0.00	1.968	11.35	0.56	7.2	92.8	0.0	-1.48	1.24	0.52	0.84	1.98	110106	14520	54	0	0	0	0	logfile
✔	6X2i	22008	2021-10-27	2020-05-20	2.87	3.18	—	3.1	0.010	0.84	0.0	0.06	10.74	0.01	2.129	11.83	0.43	2.7	97.3	0.0	-2.12	0.78	0.88	5.57	3.1	0.004	0.63	0.0	0.04	15.13	0.00	2.043	8.33	2.99	3.3	96.7	0.0	-0.87	0.55	0.78	0.89	4.90	259740	32280	60	0	0	0	0	logfile
✔	6WFU	21657	2021-10-19	2020-04-04	3.03	3.40	—	3.3	0.009	0.89	0.0	0.05	8.71	0.01	2.191	11.37	0.00	2.7	97.3	0.0	-1.73	0.77	0.88	5.59	3.3	0.004	0.67	0.0	0.04	13.23	0.00	2.130	6.61	0.18	4.0	96.0	0.0	-0.87	3.71	0.71	0.87	4.90	245100	30780	60	0	0	0	0	logfile
✔	6VN1	21247	2021-10-06	2020-01-29	2.8	2.97	2.75	3.0	0.006	0.63	0.0	0.05	13.28	0.00	2.123	7.52	0.00	6.3	93.7	0.0	-3.36	0.70	0.80	3.79	3.0	0.004	0.66	0.0	0.05	16.03	0.00	2.170	7.03	2.59	6.3	93.7	0.0	-1.16	0.45	0.74	0.83	3.44	19524	2454	9	0	0	0	0	logfile
✔	7K10	22619	2021-10-03	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.003	0.68	0.0	0.04	16.60	0.00	2.134	6.74	0.09	9.0	90.9	0.1	-1.43	0.44	0.72	0.77	1.56	10037	1259	1	0	0	0	0	logfile
✔	6WFT	21656	2021-10-21	2020-04-04	3.03	3.39	—	3.3	0.009	0.96	8.0	0.06	9.74	0.01	1.995	10.22	0.38	2.6	97.4	0.0	-1.90	0.73	0.88	5.77	3.3	0.006	0.71	0.0	0.04	14.22	0.00	1.992	7.10	0.61	4.9	95.1	0.0	-1.23	0.50	0.68	0.87	4.85	247080	30780	120	60	0	0	0	logfile
✔	6VL6	21231	2021-10-05	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.28	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	4.6	0.004	0.66	0.0	0.04	13.00	0.00	2.211	18.43	0.00	2.2	97.8	0.0	1.57	2.01	0.81	0.75	—	21504	2640	24	0	0	0	0	logfile
✔	6X2K	22010	2021-10-27	2020-05-20	2.88	3.22	—	3.2	0.011	1.00	60.0	0.07	9.90	0.01	2.052	12.92	0.84	4.2	95.6	0.2	-2.00	0.74	0.88	5.58	3.2	0.003	0.65	0.0	0.04	15.27	0.01	2.145	8.35	3.56	4.2	95.8	0.0	-1.06	1.93	0.74	0.88	4.55	259200	32820	60	0	0	0	0	logfile
✔	6VFK	21185	2021-10-06	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.32	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	4.2	0.003	0.56	0.0	0.04	13.15	0.00	2.189	9.10	0.03	1.6	98.2	0.2	4.36	1.08	0.84	0.83	—	37032	4764	24	0	0	0	0	logfile
✔	6M0S	30035	2021-10-07	2020-02-22	3.6	3.77	—	3.7	0.004	0.65	0.0	0.04	8.18	0.00	2.205	1.30	0.00	1.9	98.1	0.0	-4.94	0.71	0.74	1.42	3.7	0.003	0.57	0.0	0.04	14.54	0.00	2.071	5.22	0.21	3.0	97.0	0.0	-0.21	1.35	0.77	0.81	1.37	44660	2909	15	0	0	0	22618	logfile
✔	6YV1	10940	2021-10-03	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.67	0.0	0.04	14.42	0.00	2.288	7.04	0.00	2.6	97.4	0.0	1.10	0.66	0.51	0.86	1.34	2496	328	1	0	0	0	0	logfile

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