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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8HMV | 34903 | 2023-08-10 | 2022-12-05 | 2.91 | 3.27 | 3.06 | 3.2 | 0.005 | 0.63 | 0.0 | 0.04 | 13.38 | 0.00 | 2.150 | 4.96 | 0.00 | 3.3 | 96.7 | 0.0 | -0.72 | 0.67 | 0.86 | 4.20 | 3.2 | 0.003 | 0.49 | 0.0 | 0.04 | 15.50 | 0.00 | 2.170 | 4.71 | 0.45 | 2.6 | 97.4 | 0.0 | 0.81 | 0.37 | 0.66 | 0.87 | 3.21 | 8127 | 1022 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ADG | 15362 | 2023-08-17 | 2022-07-08 | 3.0 | 3.31 | 3.06 | 3.3 | 0.006 | 0.62 | 0.0 | 0.04 | 14.03 | 0.00 | 1.941 | 3.67 | 0.00 | 4.0 | 96.0 | 0.0 | 0.24 | 0.64 | 0.82 | 3.73 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 15.23 | 0.00 | 1.375 | 3.11 | 1.11 | 4.0 | 96.0 | 0.0 | 0.35 | 0.90 | 0.60 | 0.83 | 3.53 | 23183 | 1506 | 6 | 0 | 0 | 0 | 11375 | logfile |
✔ | 5WQ8 | 6676 | 2023-08-10 | 2016-11-23 | 3.26 | 3.41 | — | 3.3 | 0.009 | 1.18 | 0.0 | 0.06 | 10.83 | 0.01 | 1.654 | 27.56 | 0.24 | 4.8 | 95.0 | 0.2 | -2.76 | 0.72 | 0.83 | 2.86 | 3.3 | 0.003 | 0.65 | 0.0 | 0.05 | 14.43 | 0.00 | 2.173 | 10.95 | 0.29 | 3.2 | 96.6 | 0.2 | 0.01 | 1.47 | 0.71 | 0.83 | 1.72 | 56460 | 7440 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XJV | 22215 | 2023-08-22 | 2020-06-24 | 4.17 | 4.32 | — | 4.1 | 0.006 | 1.01 | 0.0 | 0.06 | 10.81 | 0.01 | 2.238 | 4.38 | 0.27 | 5.0 | 94.9 | 0.2 | -3.26 | 0.71 | 0.75 | — | 4.1 | 0.003 | 0.71 | 0.0 | 0.04 | 13.04 | 0.00 | 2.167 | 14.41 | 0.00 | 4.9 | 95.1 | 0.1 | 0.05 | 1.32 | 0.73 | 0.79 | — | 29921 | 3649 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YND | 33959 | 2023-08-15 | 2022-07-30 | 3.29 | 3.46 | 3.34 | 3.4 | 0.007 | 0.78 | 1.0 | 0.05 | 17.06 | 0.01 | 2.213 | 8.16 | 1.46 | 10.5 | 89.2 | 0.2 | -4.25 | 0.81 | 0.86 | 2.29 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 17.56 | 0.00 | 2.236 | 6.73 | 0.22 | 9.8 | 90.2 | 0.0 | -1.55 | 1.14 | 0.83 | 0.89 | 2.10 | 18098 | 2115 | 3 | 38 | 0 | 0 | 0 | logfile |
✔ | 7B9F | 12103 | 2023-08-12 | 2020-12-14 | 3.0 | 3.81 | — | 3.5 | 0.008 | 1.01 | 1.0 | 0.06 | 12.03 | 0.01 | 2.247 | 4.11 | 0.00 | 3.4 | 96.6 | 0.0 | -0.11 | 0.61 | 0.82 | 2.32 | 3.5 | 0.004 | 0.80 | 0.0 | 0.05 | 15.11 | 0.00 | 2.159 | 11.29 | 2.37 | 3.3 | 96.7 | 0.0 | 1.39 | 0.57 | 0.61 | 0.83 | 1.58 | 11270 | 1475 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z1T | 14452 | 2023-08-15 | 2022-02-25 | 2.26 | 2.85 | 2.32 | 2.6 | 0.003 | 0.55 | 0.0 | 0.03 | 15.04 | 0.00 | 2.163 | 9.13 | 0.00 | 1.1 | 98.9 | 0.0 | 3.21 | 0.75 | 0.87 | 2.74 | 2.6 | 0.003 | 0.50 | 0.0 | 0.03 | 15.84 | 0.00 | 2.216 | 5.48 | 3.28 | 1.5 | 98.5 | 0.0 | 3.72 | 1.29 | 0.67 | 0.92 | 3.41 | 18492 | 2268 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LS5 | 23502 | 2023-08-24 | 2021-02-17 | 2.74 | 3.16 | 2.79 | 3.1 | 0.004 | 0.53 | 0.0 | 0.06 | 12.59 | 0.00 | 2.007 | 3.91 | 0.02 | 1.7 | 98.3 | 0.0 | 0.77 | 0.72 | 0.80 | 4.34 | 3.1 | 0.004 | 0.54 | 0.0 | 0.06 | 14.81 | 0.00 | 2.009 | 4.91 | 0.74 | 1.7 | 98.3 | 0.0 | 1.30 | 1.15 | 0.67 | 0.77 | 3.84 | 98042 | 6315 | 28 | 0 | 0 | 0 | 48895 | logfile |
✔ | 7YKS | 33896 | 2023-08-15 | 2022-07-23 | 3.0 | 3.20 | 3.06 | 4.7 | 0.008 | 1.00 | 0.0 | 0.06 | 10.27 | 0.01 | 2.291 | 4.01 | 0.00 | 6.7 | 93.1 | 0.2 | -6.58 | 0.17 | 0.11 | -0.18 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 16.58 | 0.00 | 2.059 | 8.61 | 1.28 | 4.7 | 95.3 | 0.0 | -0.45 | 2.19 | 0.59 | 0.80 | 1.54 | 18984 | 2364 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7SL7 | 25193 | 2023-08-15 | 2021-10-22 | 3.1 | 3.35 | — | 3.4 | 0.002 | 0.56 | 0.0 | 0.04 | 13.08 | 0.00 | 2.149 | 8.91 | 0.24 | 5.5 | 94.2 | 0.3 | -0.86 | 0.77 | 0.82 | 3.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14732 | 1826 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WRL | 32732 | 2023-08-09 | 2022-01-27 | 3.51 | 3.69 | — | 3.6 | 0.006 | 1.03 | 0.0 | 0.06 | 14.71 | 0.01 | 2.289 | 5.84 | 0.00 | 13.4 | 86.6 | 0.0 | -4.19 | 0.64 | 0.78 | 2.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3251 | 419 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WKA | 32564 | 2023-08-21 | 2022-01-08 | 3.64 | 3.27 | — | 3.6 | 0.005 | 0.79 | 1.0 | 0.05 | 8.14 | 0.01 | 2.353 | 3.18 | 0.23 | 3.7 | 96.1 | 0.1 | -2.58 | 0.70 | 0.64 | 0.56 | 3.7 | 0.005 | 0.81 | 0.0 | 0.05 | 13.97 | 0.00 | 2.073 | 18.03 | 0.91 | 4.6 | 95.4 | 0.1 | -0.79 | 1.63 | 0.77 | 0.74 | 1.25 | 31353 | 4017 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XCZ | 33130 | 2023-08-14 | 2022-03-26 | 3.2 | 3.36 | 3.17 | 3.3 | 0.004 | 0.51 | 0.0 | 0.05 | 15.75 | 0.00 | 2.009 | 5.37 | 0.90 | 8.1 | 91.8 | 0.1 | -3.76 | 0.72 | 0.82 | 3.54 | 3.3 | 0.003 | 0.56 | 0.0 | 0.05 | 15.99 | 0.00 | 1.910 | 5.43 | 0.00 | 6.5 | 93.4 | 0.1 | -0.77 | 0.67 | 0.73 | 0.85 | 3.39 | 15836 | 1069 | 5 | 0 | 0 | 0 | 7747 | logfile |
✔ | 7WEE | 32448 | 2023-08-09 | 2021-12-23 | 4.0 | 4.09 | — | 4.1 | 0.005 | 0.72 | 0.0 | 0.04 | 12.68 | 0.01 | 2.116 | 8.35 | 0.00 | 4.5 | 95.5 | 0.0 | -1.60 | 0.48 | 0.80 | — | 4.0 | 0.005 | 0.77 | 0.0 | 0.05 | 15.45 | 0.00 | 2.086 | 13.21 | 0.54 | 10.4 | 89.6 | 0.0 | -1.59 | 0.47 | 0.47 | 0.80 | — | 3350 | 429 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JR7 | 22443 | 2023-08-14 | 2020-08-11 | 3.3 | 3.18 | — | 3.3 | 0.010 | 1.34 | 4.0 | 0.08 | 11.83 | 0.01 | 2.254 | 3.49 | 0.57 | 2.6 | 97.0 | 0.4 | 0.62 | 0.65 | 0.79 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15799 | 2020 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7E26 | 30952 | 2023-08-12 | 2021-02-04 | 2.29 | 2.97 | — | 2.9 | 0.009 | 0.93 | 0.0 | 0.06 | 14.05 | 0.01 | 2.312 | 2.69 | 1.19 | 1.5 | 98.5 | 0.0 | -2.93 | 0.73 | 0.88 | 5.43 | 2.9 | 0.003 | 0.51 | 0.0 | 0.04 | 15.93 | 0.00 | 2.189 | 4.06 | 1.69 | 1.8 | 98.2 | 0.0 | 1.72 | 0.32 | 0.57 | 0.83 | 4.90 | 11360 | 1435 | 10 | 0 | 0 | 80 | 0 | logfile |
✔ | 7T10 | 25586 | 2023-08-10 | 2021-11-30 | 2.5 | 2.70 | — | 2.8 | 0.005 | 1.00 | 0.0 | 0.06 | 12.36 | 0.01 | 2.235 | 3.61 | 0.73 | 3.0 | 97.0 | 0.0 | 0.62 | 0.64 | 0.83 | 4.77 | 2.8 | 0.002 | 0.57 | 0.0 | 0.04 | 13.76 | 0.00 | 2.268 | 2.39 | 0.73 | 2.3 | 97.7 | 0.0 | 1.52 | 0.91 | 0.64 | 0.83 | 3.88 | 8429 | 1146 | 9 | 0 | 0 | 5 | 0 | logfile |
✔ | 7BoJ | 30130 | 2023-08-15 | 2020-03-19 | 2.5 | 2.54 | 2.42 | 2.5 | 0.007 | 0.92 | 0.0 | 0.06 | 12.86 | 0.01 | 2.271 | 3.35 | 0.00 | 2.4 | 97.6 | 0.0 | -2.48 | 0.77 | 0.86 | 4.26 | 2.5 | 0.005 | 0.67 | 0.0 | 0.05 | 15.81 | 0.00 | 2.132 | 7.61 | 2.17 | 2.2 | 97.8 | 0.0 | 1.73 | 1.86 | 0.78 | 0.88 | 4.15 | 121500 | 15900 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QD4 | 13906 | 2023-08-15 | 2021-11-26 | 2.9 | 3.11 | 2.96 | 3.0 | 0.004 | 0.82 | 0.0 | 0.05 | 21.92 | 0.01 | 2.227 | 3.43 | 0.00 | 2.2 | 97.8 | 0.0 | -0.77 | 0.74 | 0.74 | 2.94 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 23.16 | 0.00 | 2.177 | 9.13 | 1.16 | 2.8 | 97.2 | 0.0 | 2.00 | 0.88 | 0.79 | 0.83 | 2.16 | 19118 | 1816 | 6 | 216 | 0 | 0 | 0 | logfile |
✔ | 6RJA | 4901 | 2023-08-16 | 2019-04-26 | 3.0 | 3.11 | — | 3.1 | 0.005 | 0.86 | 0.0 | 0.05 | 14.79 | 0.01 | 2.314 | 2.75 | 0.23 | 5.8 | 94.2 | 0.0 | -3.51 | 0.64 | 0.81 | 2.74 | 3.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.01 | 0.00 | 2.185 | 7.78 | 2.71 | 4.1 | 95.9 | 0.0 | -0.05 | 1.02 | 0.67 | 0.86 | 2.30 | 20372 | 1996 | 8 | 194 | 0 | 0 | 0 | logfile |