Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W4o	21535	2021-10-06	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	15.61	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.003	0.75	0.0	0.05	12.68	0.00	2.094	20.73	0.00	2.5	97.4	0.1	0.69	1.48	0.89	0.83	—	14475	1789	13	0	0	0	0	logfile
✘	6X0L	21978	2021-10-03	2020-05-16	3.9	3.69	—	3.6	0.005	0.85	0.0	0.05	18.72	0.00	2.067	21.24	0.13	5.0	95.0	0.0	-1.57	0.59	0.67	1.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8037	894	7	40	0	0	0	logfile
✔	6KMF	0724	2021-10-03	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.004	0.71	0.0	0.04	16.26	0.01	2.170	10.03	0.62	9.1	90.9	0.0	-2.94	0.50	0.53	0.80	2.58	7704	1011	4	0	0	0	0	logfile
✔	6ZiQ	11228	2021-10-05	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.73	0.0	0.08	14.67	0.00	1.911	18.83	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.68	0.00	1.960	12.06	0.08	4.5	95.5	0.0	1.03	0.61	0.47	0.71	—	22255	1385	15	0	0	0	11316	logfile
✔	6W6V	21564	2021-10-05	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	14.19	0.00	2.092	6.61	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.005	0.75	0.0	0.04	15.93	0.00	1.544	8.53	1.53	9.1	90.9	0.0	-1.49	0.89	0.71	0.83	1.94	24850	2306	11	294	0	0	0	logfile
✔	6ZG8	11196	2021-10-04	2020-06-18	3.49	2.83	3.28	3.2	0.006	0.67	0.0	0.04	15.06	0.00	2.041	11.93	0.00	3.9	96.1	0.0	0.37	0.52	0.76	2.19	3.2	0.003	0.55	0.0	0.04	16.42	0.00	2.042	9.12	0.26	2.2	97.8	0.0	2.18	0.42	0.53	0.77	1.93	15522	1045	11	0	0	0	7815	logfile
✔	6YJ5	10816	2021-10-03	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.49	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.75	0.0	0.05	15.53	0.01	2.236	8.98	0.61	10.2	89.8	0.0	-2.25	0.85	0.51	0.73	2.85	2061	306	1	0	0	0	0	logfile
✔	6WNT	21856	2021-10-06	2020-04-23	3.1	3.83	3.31	3.1	0.007	0.93	0.0	0.08	14.03	0.01	2.278	12.01	0.69	10.4	88.0	1.6	-4.65	0.88	0.86	2.11	3.1	0.008	0.81	0.0	0.04	16.77	0.01	1.867	23.74	1.10	12.1	87.8	0.1	-2.72	2.12	0.88	0.88	1.37	91164	3387	31	3025	0	0	0	logfile
✔	6ZiK	11227	2021-10-03	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.71	0.0	0.04	14.22	0.00	2.134	9.91	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.003	0.61	0.0	0.04	16.50	0.01	2.191	8.71	0.65	2.0	98.0	0.0	2.04	0.46	0.55	0.78	1.61	7735	1048	11	0	0	0	0	logfile
✔	6WNV	21857	2021-10-07	2020-04-23	3.5	4.19	3.77	3.3	0.007	0.96	0.0	0.08	13.84	0.01	2.243	12.47	0.89	13.0	85.4	1.6	-5.34	0.88	0.85	1.23	3.3	0.007	0.77	1.0	0.04	16.26	0.01	1.524	26.64	0.53	11.6	88.2	0.2	-2.83	0.65	0.89	0.86	0.99	143036	5782	52	4564	0	0	0	logfile
✘	6RRS	4989	2021-10-07	2019-05-20	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93060	23220	180	0	0	0	0	logfile
✔	6UBM	20710	2021-10-21	2019-09-12	3.3	4.23	3.63	4.1	0.007	0.84	0.0	0.05	9.74	0.01	0.759	47.70	0.22	4.0	96.0	0.0	-3.01	0.70	0.67	0.37	4.0	0.004	0.73	0.0	0.04	16.06	0.00	2.038	14.27	0.52	3.5	96.5	0.0	-1.31	2.02	0.73	0.85	2.87	248160	31140	60	0	0	0	0	logfile
✔	7K10	22619	2021-10-03	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.003	0.68	0.0	0.04	16.60	0.00	2.134	6.74	0.09	9.0	90.9	0.1	-1.43	0.44	0.72	0.77	1.56	10037	1259	1	0	0	0	0	logfile
✔	7NCJ	12268	2021-10-03	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.3	0.003	0.61	1.0	0.05	13.83	0.00	1.948	17.06	0.00	11.1	88.9	0.0	-2.86	1.86	0.71	0.59	—	10860	774	12	0	0	0	5586	logfile
✔	6UTi	20880	2021-10-07	2019-10-29	3.4	3.66	3.48	3.7	0.007	1.12	0.0	0.06	10.05	0.01	2.232	3.12	0.22	5.1	94.8	0.1	-2.89	0.75	0.82	2.32	3.6	0.003	0.62	0.0	0.04	15.18	0.00	2.194	4.70	0.22	3.6	96.3	0.1	0.39	0.86	0.75	0.86	2.53	46396	6006	28	0	0	0	0	logfile
✔	6U2V	20626	2021-10-22	2019-08-20	3.6	4.12	3.88	4.0	0.008	0.74	0.0	0.04	14.57	0.00	2.172	14.39	3.09	5.4	94.6	0.0	-3.59	0.61	0.80	2.16	4.0	0.004	0.69	0.0	0.04	16.75	0.00	2.046	13.04	0.40	3.2	96.8	0.0	-1.12	0.80	0.64	0.84	2.80	248160	31140	60	0	0	0	0	logfile
✔	7KoG	22975	2021-10-04	2020-11-09	4.25	3.30	—	6.0	0.005	1.03	1.0	0.04	18.29	0.00	1.580	10.18	0.70	0.5	99.5	0.0	-6.22	0.69	0.62	—	3.8	0.003	0.77	0.0	0.04	16.78	0.00	2.136	11.24	0.05	0.5	99.5	0.0	3.04	1.91	0.75	0.75	—	17384	2154	2	0	0	0	0	logfile
✔	7D3S	30566	2021-10-03	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	9.76	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.9	0.003	0.53	0.0	0.04	16.91	0.00	2.114	8.91	1.45	2.8	97.2	0.0	1.23	0.50	0.60	0.78	2.35	8338	1048	6	0	0	0	0	logfile
✔	7JZH	22531	2021-10-04	2020-09-02	3.59	3.46	—	3.5	0.006	0.96	4.0	0.06	20.55	0.01	2.095	16.43	16.34	8.7	91.3	0.0	-3.42	0.56	0.73	1.23	3.6	0.006	0.96	0.0	0.04	19.34	0.01	1.596	11.61	0.09	5.4	94.6	0.0	-0.27	2.50	0.60	0.74	1.34	20328	2562	6	0	0	0	0	logfile
✔	6XE9	22145	2021-10-05	2020-06-12	4.3	5.05	4.38	4.4	0.003	0.50	0.0	0.04	14.92	0.00	2.096	21.01	0.77	5.4	94.6	0.0	-1.78	0.92	0.82	—	4.4	0.003	0.64	0.0	0.04	14.50	0.00	2.127	20.44	0.05	5.5	94.5	0.0	0.64	0.61	0.92	0.82	—	22081	2949	6	0	0	0	0	logfile

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