Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L1U	0803	2022-07-03	2019-09-30	3.37	3.54	—	3.5	0.009	0.73	0.0	0.06	15.49	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.4	0.007	0.77	0.0	0.05	16.68	0.00	2.152	13.15	1.08	17.3	82.7	0.0	-5.04	1.97	0.48	0.85	2.84	10515	1500	15	0	0	0	0	logfile
✔	6LTo	0976	2022-07-04	2020-01-23	3.1	3.36	2.98	3.4	0.007	1.00	0.0	0.05	14.55	0.01	2.318	2.37	0.00	7.6	92.4	0.0	-4.14	0.67	0.81	2.32	3.4	0.002	0.63	0.0	0.04	16.11	0.00	2.128	5.05	0.41	6.0	94.0	0.0	0.77	1.59	0.65	0.80	2.01	17255	2156	7	0	0	0	0	logfile
✔	6WTD	21894	2022-07-03	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.83	0.0	0.04	13.27	0.00	2.131	13.81	0.00	4.4	95.6	0.0	-2.01	1.94	0.55	0.72	—	9139	1233	16	0	0	0	0	logfile
✔	6VXF	21436	2022-07-03	2020-02-21	3.5	3.42	—	3.4	0.009	1.04	0.0	0.06	15.36	0.01	2.255	4.79	1.25	7.7	92.1	0.2	-4.65	0.63	0.81	2.40	3.4	0.016	1.68	0.0	0.05	16.42	0.00	2.177	18.05	0.00	7.3	92.5	0.2	-1.61	0.46	0.63	0.81	1.81	8786	1130	2	0	0	0	0	logfile
✔	6V0J	21000	2022-07-04	2019-11-18	3.78	3.93	—	3.8	0.006	0.88	0.0	0.05	10.19	0.01	2.373	5.21	0.00	5.8	94.0	0.3	-3.23	0.83	0.83	2.89	3.8	0.004	0.77	0.0	0.05	14.13	0.00	2.214	14.51	0.30	6.5	93.5	0.0	-1.60	4.22	0.83	0.83	2.58	15252	2010	6	0	0	0	0	logfile
✔	6WHi	21517	2022-07-05	2020-04-08	4.2	4.08	—	4.3	0.005	0.95	0.0	0.06	11.16	0.00	1.927	9.80	0.00	1.8	98.2	0.0	-1.63	0.71	0.76	—	4.2	0.003	0.60	0.0	0.04	13.68	0.00	2.149	8.74	0.06	4.1	95.9	0.0	0.47	0.86	0.75	0.83	—	22636	2968	16	110	0	0	0	logfile
✔	6VK0	21222	2022-07-03	2020-01-18	4.1	4.29	—	4.2	0.007	0.84	1.0	0.05	14.84	0.01	2.198	17.71	0.19	6.7	93.3	0.0	-3.49	0.60	0.78	—	4.2	0.003	0.75	0.0	0.04	14.87	0.00	2.139	12.44	0.00	5.3	94.7	0.0	0.49	1.56	0.59	0.77	—	9559	1160	4	0	0	0	0	logfile
✔	6TZ5	20589	2022-07-06	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.004	0.80	0.0	0.04	18.74	0.01	2.059	14.56	0.91	1.5	98.5	0.0	3.23	1.51	0.50	0.84	0.86	93500	12104	68	0	0	0	0	logfile
✔	6T93	10408	2022-07-03	2019-10-25	3.49	4.10	—	3.7	0.014	1.15	0.0	0.06	27.23	0.01	2.435	0.96	0.00	0.3	99.7	0.0	0.78	0.87	0.85	2.94	3.7	0.004	0.67	0.0	0.03	28.09	0.00	2.207	12.36	0.48	2.4	97.6	0.0	2.49	1.86	0.87	0.87	2.02	12199	758	10	302	0	0	0	logfile
✔	7BTQ	30182	2022-07-06	2020-04-02	4.54	4.68	—	4.5	0.006	1.22	0.0	0.06	17.31	0.01	1.250	9.20	0.85	13.6	86.4	0.0	-4.60	0.82	0.74	—	4.5	0.003	0.81	0.0	0.04	17.33	0.00	2.049	14.71	0.05	10.5	89.5	0.0	-1.66	3.44	0.84	0.79	—	20419	2324	6	88	0	0	0	logfile
✔	6YRK	10890	2022-07-06	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.68	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.004	0.77	0.0	0.04	13.95	0.01	2.108	25.40	0.00	7.1	92.7	0.1	-1.38	1.88	0.85	0.69	—	15058	1937	2	0	0	0	0	logfile
✔	6JPQ	9870	2022-07-05	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.56	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.003	0.83	0.0	0.05	12.92	0.01	2.075	25.19	0.00	8.7	91.3	0.0	-2.15	1.79	0.82	0.80	—	27768	3462	6	0	0	0	0	logfile
✔	6V0C	20993	2022-07-07	2019-11-18	3.46	3.52	—	3.5	0.007	0.94	0.0	0.06	10.08	0.01	2.280	3.84	0.00	2.7	97.3	0.0	-3.30	0.79	0.82	3.14	3.5	0.003	0.65	0.0	0.05	14.54	0.00	2.197	10.77	0.39	4.3	95.7	0.0	-1.77	1.51	0.80	0.84	2.87	37920	4992	6	0	0	0	0	logfile
✔	6TZ4	20588	2022-07-06	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.95	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	3.5	0.005	0.95	0.0	0.04	17.71	0.00	1.988	19.71	0.70	1.4	98.6	0.0	2.28	1.70	0.60	0.84	0.18	99216	12852	72	0	0	0	0	logfile
✔	6XJX	22216	2022-07-03	2020-06-24	4.6	4.25	—	4.1	0.009	1.20	0.0	0.06	12.14	0.01	1.876	8.13	0.39	6.4	93.6	0.0	-3.41	0.67	0.80	—	4.1	0.003	0.70	0.0	0.04	13.64	0.00	2.141	12.88	0.00	3.9	96.1	0.0	0.94	1.93	0.67	0.80	—	12077	1462	10	0	0	0	0	logfile
✔	6WQ2	21868	2022-07-03	2020-04-28	4.0	4.59	—	4.0	0.005	0.71	0.0	0.04	16.13	0.00	2.043	19.11	0.02	8.1	91.9	0.0	-2.84	0.44	0.83	—	4.0	0.005	1.01	0.0	0.05	18.16	0.01	2.057	27.99	0.74	8.4	91.6	0.0	-0.89	2.18	0.44	0.83	—	56240	6052	36	448	0	0	0	logfile
✔	6LNi	0931	2022-07-03	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.40	0.00	2.265	11.51	1.23	11.0	89.0	0.0	-3.93	1.18	0.53	0.86	5.22	4920	600	10	0	0	0	0	logfile
✔	6YBV	10774	2022-07-03	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.86	0.0	0.05	18.51	0.00	2.029	20.34	0.80	11.9	87.9	0.1	-2.61	3.36	0.34	0.60	0.38	6731	769	5	78	0	0	0	logfile
✔	6WB2	21585	2022-07-03	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.98	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.20	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6WAZ	21582	2022-07-03	2020-03-26	4.1	4.33	—	4.2	0.004	0.79	0.0	0.06	14.85	0.01	1.931	10.10	0.27	8.5	91.5	0.0	-4.73	0.83	0.82	—	4.2	0.003	0.62	0.0	0.04	14.41	0.00	2.121	8.70	0.00	5.2	94.8	0.0	-1.12	0.76	0.83	0.83	—	8537	955	4	54	0	0	0	logfile

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