Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CoZ	7545	2022-12-11	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6ACC	9588	2022-12-15	2018-07-26	3.6	3.90	—	3.8	0.005	0.95	1.0	0.06	9.62	0.01	2.139	6.04	0.43	12.0	87.4	0.6	-4.74	0.69	0.73	1.40	3.8	0.006	0.80	0.0	0.05	14.49	0.00	2.132	15.32	0.65	14.3	85.6	0.2	-2.78	0.87	0.72	0.75	1.69	24906	3195	3	0	0	0	0	logfile
✔	6GBZ	4378	2022-12-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.87	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.005	0.72	0.0	0.04	15.83	0.01	1.983	19.65	1.04	10.8	89.1	0.1	-2.14	0.88	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	6QVD	4649	2022-12-12	2019-03-01	4.34	5.50	4.28	6.0	0.010	1.80	8.0	0.10	12.96	0.01	2.193	12.88	3.61	9.6	90.1	0.3	-4.01	0.68	0.75	—	5.3	0.003	0.89	0.0	0.05	11.90	0.00	2.142	15.82	0.00	7.9	91.9	0.2	-0.67	1.76	0.67	0.71	—	9212	1192	2	0	0	0	0	logfile
✔	6ACJ	9593	2022-12-16	2018-07-26	4.2	4.37	—	4.2	0.010	1.33	2.0	0.07	11.28	0.01	1.731	12.06	0.61	16.8	82.7	0.6	-4.76	0.74	0.71	—	4.2	0.004	0.79	0.0	0.05	12.40	0.01	2.091	20.18	0.00	14.5	85.3	0.2	-2.68	1.55	0.75	0.72	—	29715	3784	4	0	0	0	0	logfile
✔	6JXR	9895	2022-12-12	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.94	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.003	0.71	0.0	0.04	15.79	0.00	2.119	11.45	0.43	6.5	93.4	0.1	-0.30	1.72	0.66	0.79	2.12	8437	1073	8	0	0	0	0	logfile
✔	6U84	20677	2022-12-14	2019-09-04	3.7	3.88	—	3.9	0.011	0.74	0.0	0.05	15.06	0.00	2.214	5.53	0.90	6.0	94.0	0.0	-2.20	0.71	0.83	1.72	3.8	0.003	0.59	0.0	0.04	16.66	0.00	2.214	7.26	0.59	2.6	97.4	0.0	1.37	0.59	0.71	0.84	1.26	20460	2520	4	0	0	0	0	logfile
✔	6R8Y	4762	2022-12-20	2019-04-02	4.3	4.52	—	4.4	0.015	1.07	2.0	0.08	22.89	0.01	2.015	3.55	0.47	5.7	94.0	0.3	-1.60	0.78	0.76	—	4.4	0.005	0.78	2.0	0.07	22.84	0.00	1.740	13.68	0.06	9.1	90.7	0.2	-1.27	1.31	0.77	0.78	—	40962	1996	12	289	0	0	19245	logfile
✔	6QG2	4545	2022-12-20	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.72	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.75	0.0	0.05	15.45	0.00	2.115	17.30	0.00	10.4	88.9	0.7	-1.95	1.68	0.70	0.58	—	38664	4961	16	0	0	0	0	logfile
✔	6U48	20638	2022-12-16	2019-08-23	2.87	2.54	2.82	2.8	0.007	0.93	3.0	0.05	14.16	0.02	1.331	3.54	0.74	6.2	93.3	0.4	-3.65	0.49	0.75	3.87	2.8	0.006	0.78	3.0	0.04	14.90	0.01	2.040	7.56	2.83	7.0	92.6	0.3	-1.79	0.34	0.54	0.79	3.26	90950	3378	32	3016	0	0	0	logfile
✔	6RJD	4902	2022-12-12	2019-04-26	3.3	3.40	—	3.3	0.006	0.90	0.0	0.05	18.11	0.01	2.259	2.97	0.27	6.9	93.1	0.0	-3.53	0.65	0.83	2.84	3.3	0.003	0.57	0.0	0.04	18.55	0.00	2.268	6.50	0.54	4.8	95.2	0.0	-0.38	0.47	0.66	0.84	2.34	9332	831	4	123	0	0	0	logfile
✔	6QVB	4646	2022-12-12	2019-03-01	4.34	5.06	4.26	4.4	0.010	1.72	8.0	0.09	12.75	0.01	2.153	12.31	3.10	10.3	89.5	0.2	-4.45	0.67	0.75	—	4.4	0.003	0.96	0.0	0.05	12.46	0.01	2.087	20.57	0.00	9.0	91.0	0.0	-0.55	1.41	0.67	0.75	—	9237	1193	2	0	0	0	0	logfile
✔	6JC3	9793	2022-12-11	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.71	0.0	0.04	13.52	0.00	2.128	11.22	0.00	4.4	95.6	0.0	0.91	4.23	0.43	0.81	—	3154	391	2	6	0	0	0	logfile
✔	6DJB	7935	2022-12-19	2018-05-24	4.4	4.63	—	4.4	0.013	1.59	3.0	0.07	9.16	0.01	2.377	1.68	0.08	7.4	92.4	0.2	-1.85	0.75	0.77	—	4.4	0.003	0.77	0.0	0.05	12.37	0.00	2.147	15.19	0.11	9.9	90.0	0.0	-1.60	2.26	0.77	0.80	—	34707	4293	6	0	0	0	0	logfile
✔	6GC4	4380	2022-12-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.007	0.79	0.0	0.04	15.51	0.01	1.989	26.90	0.04	11.4	88.5	0.1	-2.30	0.97	0.81	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	6QVC	4647	2022-12-12	2019-03-01	4.0	4.37	3.89	4.1	0.008	1.47	0.0	0.08	11.98	0.01	2.232	8.97	2.19	8.4	91.1	0.5	-3.90	0.67	0.81	—	4.1	0.004	1.07	0.0	0.05	14.26	0.00	2.155	18.59	0.80	6.9	93.1	0.0	0.38	1.37	0.68	0.81	—	9272	1198	2	0	0	0	0	logfile
✔	3J1B	5391	2022-12-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.78	0.0	0.05	14.62	0.01	2.174	15.69	0.00	4.8	94.6	0.6	0.77	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	6PUo	20478	2022-12-20	2019-07-18	3.3	3.94	—	3.6	0.007	0.90	0.0	0.05	13.53	0.01	2.305	5.35	0.35	7.4	92.5	0.2	-3.47	0.74	0.80	2.49	3.5	0.002	0.63	0.0	0.04	14.16	0.00	2.223	7.26	0.29	6.1	93.8	0.1	0.30	1.07	0.77	0.86	2.40	37804	5208	4	0	0	0	0	logfile
✔	3JCi	6555	2022-12-17	2015-12-13	2.9	3.14	—	3.1	0.010	0.89	0.0	0.05	8.65	0.01	0.060	32.23	0.00	2.1	97.3	0.5	-2.08	0.74	0.84	5.65	3.1	0.013	0.91	17.0	0.05	16.16	0.01	1.687	17.43	2.47	3.8	96.1	0.1	-1.14	0.85	0.67	0.85	4.75	94977	11590	61	0	0	0	0	logfile
✔	6BX3	7303	2022-12-12	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	25.18	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.004	0.86	0.0	0.05	13.17	0.00	2.087	24.33	0.00	18.3	81.7	0.1	-3.59	1.39	0.74	0.73	—	10456	1413	7	0	0	0	0	logfile

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