The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6CoZ | 7545 | 2022-12-11 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ACC | 9588 | 2022-12-15 | 2018-07-26 | 3.6 | 3.90 | — | 3.8 | 0.005 | 0.95 | 1.0 | 0.06 | 9.62 | 0.01 | 2.139 | 6.04 | 0.43 | 12.0 | 87.4 | 0.6 | -4.74 | 0.69 | 0.73 | 1.40 | 3.8 | 0.006 | 0.80 | 0.0 | 0.05 | 14.49 | 0.00 | 2.132 | 15.32 | 0.65 | 14.3 | 85.6 | 0.2 | -2.78 | 0.87 | 0.72 | 0.75 | 1.69 | 24906 | 3195 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2022-12-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.87 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.983 | 19.65 | 1.04 | 10.8 | 89.1 | 0.1 | -2.14 | 0.88 | 0.78 | 0.77 | 1.03 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 6QVD | 4649 | 2022-12-12 | 2019-03-01 | 4.34 | 5.50 | 4.28 | 6.0 | 0.010 | 1.80 | 8.0 | 0.10 | 12.96 | 0.01 | 2.193 | 12.88 | 3.61 | 9.6 | 90.1 | 0.3 | -4.01 | 0.68 | 0.75 | — | 5.3 | 0.003 | 0.89 | 0.0 | 0.05 | 11.90 | 0.00 | 2.142 | 15.82 | 0.00 | 7.9 | 91.9 | 0.2 | -0.67 | 1.76 | 0.67 | 0.71 | — | 9212 | 1192 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ACJ | 9593 | 2022-12-16 | 2018-07-26 | 4.2 | 4.37 | — | 4.2 | 0.010 | 1.33 | 2.0 | 0.07 | 11.28 | 0.01 | 1.731 | 12.06 | 0.61 | 16.8 | 82.7 | 0.6 | -4.76 | 0.74 | 0.71 | — | 4.2 | 0.004 | 0.79 | 0.0 | 0.05 | 12.40 | 0.01 | 2.091 | 20.18 | 0.00 | 14.5 | 85.3 | 0.2 | -2.68 | 1.55 | 0.75 | 0.72 | — | 29715 | 3784 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JXR | 9895 | 2022-12-12 | 2019-04-24 | 3.7 | 3.95 | — | 3.9 | 0.008 | 1.01 | 0.0 | 0.06 | 10.83 | 0.01 | 2.273 | 5.94 | 0.74 | 7.2 | 92.6 | 0.2 | -3.45 | 0.69 | 0.78 | 2.74 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 15.79 | 0.00 | 2.119 | 11.45 | 0.43 | 6.5 | 93.4 | 0.1 | -0.30 | 1.72 | 0.66 | 0.79 | 2.12 | 8437 | 1073 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U84 | 20677 | 2022-12-14 | 2019-09-04 | 3.7 | 3.88 | — | 3.9 | 0.011 | 0.74 | 0.0 | 0.05 | 15.06 | 0.00 | 2.214 | 5.53 | 0.90 | 6.0 | 94.0 | 0.0 | -2.20 | 0.71 | 0.83 | 1.72 | 3.8 | 0.003 | 0.59 | 0.0 | 0.04 | 16.66 | 0.00 | 2.214 | 7.26 | 0.59 | 2.6 | 97.4 | 0.0 | 1.37 | 0.59 | 0.71 | 0.84 | 1.26 | 20460 | 2520 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6R8Y | 4762 | 2022-12-20 | 2019-04-02 | 4.3 | 4.52 | — | 4.4 | 0.015 | 1.07 | 2.0 | 0.08 | 22.89 | 0.01 | 2.015 | 3.55 | 0.47 | 5.7 | 94.0 | 0.3 | -1.60 | 0.78 | 0.76 | — | 4.4 | 0.005 | 0.78 | 2.0 | 0.07 | 22.84 | 0.00 | 1.740 | 13.68 | 0.06 | 9.1 | 90.7 | 0.2 | -1.27 | 1.31 | 0.77 | 0.78 | — | 40962 | 1996 | 12 | 289 | 0 | 0 | 19245 | logfile |
✔ | 6QG2 | 4545 | 2022-12-20 | 2019-01-10 | 4.55 | 4.79 | 4.48 | 4.5 | 0.009 | 1.44 | 35.0 | 0.09 | 18.65 | 0.00 | 1.236 | 4.72 | 7.64 | 13.2 | 83.4 | 3.4 | -1.88 | 0.58 | 0.37 | — | 4.5 | 0.003 | 0.75 | 0.0 | 0.05 | 15.45 | 0.00 | 2.115 | 17.30 | 0.00 | 10.4 | 88.9 | 0.7 | -1.95 | 1.68 | 0.70 | 0.58 | — | 38664 | 4961 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U48 | 20638 | 2022-12-16 | 2019-08-23 | 2.87 | 2.54 | 2.82 | 2.8 | 0.007 | 0.93 | 3.0 | 0.05 | 14.16 | 0.02 | 1.331 | 3.54 | 0.74 | 6.2 | 93.3 | 0.4 | -3.65 | 0.49 | 0.75 | 3.87 | 2.8 | 0.006 | 0.78 | 3.0 | 0.04 | 14.90 | 0.01 | 2.040 | 7.56 | 2.83 | 7.0 | 92.6 | 0.3 | -1.79 | 0.34 | 0.54 | 0.79 | 3.26 | 90950 | 3378 | 32 | 3016 | 0 | 0 | 0 | logfile |
✔ | 6RJD | 4902 | 2022-12-12 | 2019-04-26 | 3.3 | 3.40 | — | 3.3 | 0.006 | 0.90 | 0.0 | 0.05 | 18.11 | 0.01 | 2.259 | 2.97 | 0.27 | 6.9 | 93.1 | 0.0 | -3.53 | 0.65 | 0.83 | 2.84 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 18.55 | 0.00 | 2.268 | 6.50 | 0.54 | 4.8 | 95.2 | 0.0 | -0.38 | 0.47 | 0.66 | 0.84 | 2.34 | 9332 | 831 | 4 | 123 | 0 | 0 | 0 | logfile |
✔ | 6QVB | 4646 | 2022-12-12 | 2019-03-01 | 4.34 | 5.06 | 4.26 | 4.4 | 0.010 | 1.72 | 8.0 | 0.09 | 12.75 | 0.01 | 2.153 | 12.31 | 3.10 | 10.3 | 89.5 | 0.2 | -4.45 | 0.67 | 0.75 | — | 4.4 | 0.003 | 0.96 | 0.0 | 0.05 | 12.46 | 0.01 | 2.087 | 20.57 | 0.00 | 9.0 | 91.0 | 0.0 | -0.55 | 1.41 | 0.67 | 0.75 | — | 9237 | 1193 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6JC3 | 9793 | 2022-12-11 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.003 | 0.71 | 0.0 | 0.04 | 13.52 | 0.00 | 2.128 | 11.22 | 0.00 | 4.4 | 95.6 | 0.0 | 0.91 | 4.23 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6DJB | 7935 | 2022-12-19 | 2018-05-24 | 4.4 | 4.63 | — | 4.4 | 0.013 | 1.59 | 3.0 | 0.07 | 9.16 | 0.01 | 2.377 | 1.68 | 0.08 | 7.4 | 92.4 | 0.2 | -1.85 | 0.75 | 0.77 | — | 4.4 | 0.003 | 0.77 | 0.0 | 0.05 | 12.37 | 0.00 | 2.147 | 15.19 | 0.11 | 9.9 | 90.0 | 0.0 | -1.60 | 2.26 | 0.77 | 0.80 | — | 34707 | 4293 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2022-12-15 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.16 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.007 | 0.79 | 0.0 | 0.04 | 15.51 | 0.01 | 1.989 | 26.90 | 0.04 | 11.4 | 88.5 | 0.1 | -2.30 | 0.97 | 0.81 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6QVC | 4647 | 2022-12-12 | 2019-03-01 | 4.0 | 4.37 | 3.89 | 4.1 | 0.008 | 1.47 | 0.0 | 0.08 | 11.98 | 0.01 | 2.232 | 8.97 | 2.19 | 8.4 | 91.1 | 0.5 | -3.90 | 0.67 | 0.81 | — | 4.1 | 0.004 | 1.07 | 0.0 | 0.05 | 14.26 | 0.00 | 2.155 | 18.59 | 0.80 | 6.9 | 93.1 | 0.0 | 0.38 | 1.37 | 0.68 | 0.81 | — | 9272 | 1198 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-12-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.05 | 14.62 | 0.01 | 2.174 | 15.69 | 0.00 | 4.8 | 94.6 | 0.6 | 0.77 | 2.25 | 0.79 | 0.70 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PUo | 20478 | 2022-12-20 | 2019-07-18 | 3.3 | 3.94 | — | 3.6 | 0.007 | 0.90 | 0.0 | 0.05 | 13.53 | 0.01 | 2.305 | 5.35 | 0.35 | 7.4 | 92.5 | 0.2 | -3.47 | 0.74 | 0.80 | 2.49 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 14.16 | 0.00 | 2.223 | 7.26 | 0.29 | 6.1 | 93.8 | 0.1 | 0.30 | 1.07 | 0.77 | 0.86 | 2.40 | 37804 | 5208 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCi | 6555 | 2022-12-17 | 2015-12-13 | 2.9 | 3.14 | — | 3.1 | 0.010 | 0.89 | 0.0 | 0.05 | 8.65 | 0.01 | 0.060 | 32.23 | 0.00 | 2.1 | 97.3 | 0.5 | -2.08 | 0.74 | 0.84 | 5.65 | 3.1 | 0.013 | 0.91 | 17.0 | 0.05 | 16.16 | 0.01 | 1.687 | 17.43 | 2.47 | 3.8 | 96.1 | 0.1 | -1.14 | 0.85 | 0.67 | 0.85 | 4.75 | 94977 | 11590 | 61 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BX3 | 7303 | 2022-12-12 | 2017-12-16 | 4.3 | 4.71 | — | 4.4 | 0.007 | 1.49 | 0.0 | 0.08 | 12.65 | 0.01 | 1.094 | 25.18 | 0.97 | 18.8 | 81.2 | 0.1 | -5.00 | 0.74 | 0.72 | — | 4.4 | 0.004 | 0.86 | 0.0 | 0.05 | 13.17 | 0.00 | 2.087 | 24.33 | 0.00 | 18.3 | 81.7 | 0.1 | -3.59 | 1.39 | 0.74 | 0.73 | — | 10456 | 1413 | 7 | 0 | 0 | 0 | 0 | logfile |