Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ui0	26521	2023-04-25	2022-03-28	3.4	3.51	3.43	3.6	0.008	0.81	0.0	0.05	13.94	0.01	2.052	14.18	0.00	5.3	94.7	0.0	-1.38	0.81	0.82	2.16	3.6	0.004	0.63	0.0	0.04	15.79	0.00	2.121	11.79	0.29	3.9	96.1	0.0	-0.88	1.35	0.83	0.86	2.68	19203	2415	9	0	0	0	0	logfile
✔	7Z1H	14446	2023-04-23	2022-02-24	3.12	4.01	—	3.5	0.016	0.97	2.0	0.04	12.32	0.00	1.830	20.25	0.18	10.8	88.7	0.5	-1.31	0.79	0.79	1.28	3.5	0.016	0.94	2.0	0.04	14.23	0.00	1.692	20.59	0.00	11.7	87.9	0.4	-1.08	0.41	0.79	0.77	1.28	15032	1848	1	0	0	0	0	logfile
✔	6WDN	21642	2023-04-22	2020-04-01	3.2	4.00	—	3.8	0.005	0.74	2.0	0.05	15.07	0.01	2.166	14.85	0.52	7.1	92.9	0.0	-5.36	0.74	0.82	1.98	3.8	0.003	0.75	0.0	0.04	16.82	0.00	2.075	11.72	0.74	4.7	95.3	0.0	-0.82	0.63	0.74	0.82	1.91	12612	1540	10	0	0	0	0	logfile
✔	7WVo	32855	2023-04-26	2022-02-10	3.41	2.96	—	3.5	0.006	0.83	0.0	0.05	8.31	0.01	2.354	2.02	0.08	3.7	96.2	0.1	-3.17	0.72	0.68	0.86	3.5	0.003	0.75	0.0	0.05	14.52	0.00	2.128	11.26	0.31	2.7	97.3	0.0	-0.26	1.66	0.79	0.78	1.57	23188	2961	3	0	0	0	0	logfile
✔	8DXP	27772	2023-04-24	2022-08-02	3.7	3.99	3.78	3.9	0.003	0.55	0.0	0.04	14.49	0.00	2.258	6.19	0.00	6.4	93.6	0.0	0.53	0.67	0.74	1.45	3.9	0.003	0.60	0.0	0.04	16.92	0.00	2.175	8.00	0.46	6.1	93.8	0.0	0.65	2.27	0.68	0.78	0.84	17465	2097	7	0	0	0	0	logfile
✔	7WTJ	32788	2023-04-19	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✔	7SL1	25188	2023-04-27	2021-10-22	3.4	3.69	—	3.6	0.002	0.60	0.0	0.04	13.62	0.00	2.186	10.54	0.00	7.8	92.0	0.2	-1.04	0.80	0.79	3.27	3.5	0.003	0.62	0.0	0.04	15.46	0.00	2.117	12.23	0.06	8.2	91.8	0.0	-1.07	0.43	0.82	0.85	2.91	13830	1714	6	0	0	0	0	logfile
✔	7YND	33959	2023-04-24	2022-07-30	3.29	3.46	3.34	3.4	0.007	0.78	1.0	0.05	17.06	0.01	2.213	8.16	1.46	10.5	89.2	0.2	-4.25	0.81	0.86	2.29	3.4	0.003	0.63	0.0	0.04	17.56	0.00	2.236	6.73	0.22	9.8	90.2	0.0	-1.55	1.14	0.83	0.89	2.10	18098	2115	3	38	0	0	0	logfile
✘	7JR7	22443	2023-04-23	2020-08-11	3.3	3.18	—	3.3	0.010	1.34	4.0	0.08	11.83	0.01	2.254	3.49	0.57	2.6	97.0	0.4	0.62	0.65	0.79	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15799	2020	6	0	0	0	0	logfile
✔	6S44	10097	2023-04-24	2019-06-26	3.19	3.30	3.41	3.2	0.010	0.92	0.0	0.06	16.63	0.01	2.324	10.10	11.02	9.7	90.3	0.0	-3.81	0.71	0.82	3.28	3.2	0.007	0.76	0.0	0.05	16.97	0.01	2.148	22.58	1.13	12.4	87.6	0.0	-2.84	0.69	0.73	0.85	3.37	67200	8760	60	0	0	0	0	logfile
✔	8i1T	35121	2023-04-26	2023-01-13	2.8	2.69	2.76	2.7	0.007	0.70	0.0	0.05	14.07	0.00	2.196	7.64	0.08	3.2	96.6	0.2	-1.01	0.58	0.87	4.08	2.7	0.002	0.55	0.0	0.04	15.55	0.00	2.181	7.49	1.30	2.5	97.3	0.2	-0.65	0.28	0.58	0.88	3.21	22939	3003	7	0	0	0	0	logfile
✔	7WVN	32854	2023-04-27	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.76	0.0	0.05	14.62	0.00	2.080	12.93	0.69	3.1	96.9	0.0	-0.23	1.22	0.79	0.78	1.62	24805	3162	3	0	0	0	0	logfile
✔	7o7F	12746	2023-04-22	2021-04-13	3.15	3.42	3.19	3.4	0.004	0.64	0.0	0.04	14.02	0.00	1.932	7.93	0.16	2.5	97.5	0.0	0.48	0.70	0.77	2.29	3.4	0.004	0.62	0.0	0.04	15.84	0.00	2.090	10.14	0.32	2.5	97.5	0.0	0.49	0.53	0.68	0.74	2.16	11170	1420	7	0	0	0	0	logfile
✔	7WVQ	32857	2023-04-29	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.6	0.003	0.74	0.0	0.05	11.40	0.01	2.061	14.61	0.03	3.9	96.1	0.1	-1.44	1.11	0.72	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	7ZPM	14858	2023-04-25	2022-04-27	2.81	3.56	2.81	3.0	0.002	0.49	0.0	0.04	13.14	0.00	1.820	6.91	0.14	3.5	96.4	0.1	-0.23	0.93	0.88	3.42	3.0	0.003	0.68	0.0	0.04	15.22	0.00	2.137	9.74	1.07	3.4	96.5	0.0	0.72	1.06	0.93	0.91	3.15	19330	2412	6	0	0	0	0	logfile
✔	7WVP	32856	2023-04-29	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.82	1.0	0.05	15.92	0.00	2.060	17.53	0.61	5.2	94.8	0.0	-1.57	1.54	0.75	0.67	0.41	29601	3750	4	0	0	0	0	logfile
✔	7XCZ	33130	2023-04-23	2022-03-26	3.2	3.36	3.17	3.3	0.004	0.51	0.0	0.05	15.75	0.00	2.009	5.37	0.90	8.1	91.8	0.1	-3.76	0.72	0.82	3.54	3.3	0.003	0.56	0.0	0.05	15.99	0.00	1.910	5.43	0.00	6.5	93.4	0.1	-0.77	0.67	0.73	0.85	3.39	15836	1069	5	0	0	0	7747	logfile
✔	7UVL	26813	2023-04-24	2022-05-02	3.56	4.29	3.57	3.8	0.003	0.56	0.0	0.04	12.92	0.00	2.161	13.72	0.00	5.2	94.8	0.0	-0.68	0.90	0.82	1.57	3.8	0.005	0.67	0.0	0.04	14.80	0.00	2.044	18.46	0.22	7.1	92.9	0.0	-0.75	0.88	0.90	0.83	1.07	16508	2154	5	0	0	0	0	logfile
✔	7Z22	14455	2023-04-24	2022-02-25	2.95	3.65	3.03	3.3	0.003	0.51	0.0	0.04	11.34	0.00	2.198	6.76	0.00	1.8	98.2	0.0	2.55	0.53	0.47	1.52	3.4	0.003	0.77	0.0	0.04	16.88	0.00	2.263	9.93	3.87	2.1	97.9	0.0	2.88	1.90	0.71	0.88	2.84	18492	2268	12	0	0	0	0	logfile
✔	5WQ7	6675	2023-04-20	2016-11-23	3.04	3.17	—	3.1	0.009	1.02	15.0	0.06	11.52	0.01	1.901	26.96	0.49	4.1	95.3	0.6	-2.95	0.70	0.83	2.90	3.1	0.003	0.63	0.0	0.04	15.02	0.00	2.148	12.40	0.31	2.4	97.4	0.2	0.04	0.64	0.70	0.83	2.00	54480	7080	15	0	0	0	0	logfile

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