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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Ui0 | 26521 | 2023-04-25 | 2022-03-28 | 3.4 | 3.51 | 3.43 | 3.6 | 0.008 | 0.81 | 0.0 | 0.05 | 13.94 | 0.01 | 2.052 | 14.18 | 0.00 | 5.3 | 94.7 | 0.0 | -1.38 | 0.81 | 0.82 | 2.16 | 3.6 | 0.004 | 0.63 | 0.0 | 0.04 | 15.79 | 0.00 | 2.121 | 11.79 | 0.29 | 3.9 | 96.1 | 0.0 | -0.88 | 1.35 | 0.83 | 0.86 | 2.68 | 19203 | 2415 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z1H | 14446 | 2023-04-23 | 2022-02-24 | 3.12 | 4.01 | — | 3.5 | 0.016 | 0.97 | 2.0 | 0.04 | 12.32 | 0.00 | 1.830 | 20.25 | 0.18 | 10.8 | 88.7 | 0.5 | -1.31 | 0.79 | 0.79 | 1.28 | 3.5 | 0.016 | 0.94 | 2.0 | 0.04 | 14.23 | 0.00 | 1.692 | 20.59 | 0.00 | 11.7 | 87.9 | 0.4 | -1.08 | 0.41 | 0.79 | 0.77 | 1.28 | 15032 | 1848 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WDN | 21642 | 2023-04-22 | 2020-04-01 | 3.2 | 4.00 | — | 3.8 | 0.005 | 0.74 | 2.0 | 0.05 | 15.07 | 0.01 | 2.166 | 14.85 | 0.52 | 7.1 | 92.9 | 0.0 | -5.36 | 0.74 | 0.82 | 1.98 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 16.82 | 0.00 | 2.075 | 11.72 | 0.74 | 4.7 | 95.3 | 0.0 | -0.82 | 0.63 | 0.74 | 0.82 | 1.91 | 12612 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVo | 32855 | 2023-04-26 | 2022-02-10 | 3.41 | 2.96 | — | 3.5 | 0.006 | 0.83 | 0.0 | 0.05 | 8.31 | 0.01 | 2.354 | 2.02 | 0.08 | 3.7 | 96.2 | 0.1 | -3.17 | 0.72 | 0.68 | 0.86 | 3.5 | 0.003 | 0.75 | 0.0 | 0.05 | 14.52 | 0.00 | 2.128 | 11.26 | 0.31 | 2.7 | 97.3 | 0.0 | -0.26 | 1.66 | 0.79 | 0.78 | 1.57 | 23188 | 2961 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DXP | 27772 | 2023-04-24 | 2022-08-02 | 3.7 | 3.99 | 3.78 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 14.49 | 0.00 | 2.258 | 6.19 | 0.00 | 6.4 | 93.6 | 0.0 | 0.53 | 0.67 | 0.74 | 1.45 | 3.9 | 0.003 | 0.60 | 0.0 | 0.04 | 16.92 | 0.00 | 2.175 | 8.00 | 0.46 | 6.1 | 93.8 | 0.0 | 0.65 | 2.27 | 0.68 | 0.78 | 0.84 | 17465 | 2097 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WTJ | 32788 | 2023-04-19 | 2022-02-04 | 4.2 | 4.07 | — | 4.1 | 0.006 | 0.85 | 3.0 | 0.05 | 13.86 | 0.01 | 2.242 | 10.88 | 0.58 | 8.9 | 91.1 | 0.0 | -2.21 | 0.55 | 0.79 | — | 4.0 | 0.005 | 0.75 | 0.0 | 0.05 | 14.22 | 0.00 | 2.204 | 11.35 | 0.00 | 14.6 | 85.4 | 0.0 | -2.22 | 0.37 | 0.55 | 0.81 | — | 3261 | 424 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SL1 | 25188 | 2023-04-27 | 2021-10-22 | 3.4 | 3.69 | — | 3.6 | 0.002 | 0.60 | 0.0 | 0.04 | 13.62 | 0.00 | 2.186 | 10.54 | 0.00 | 7.8 | 92.0 | 0.2 | -1.04 | 0.80 | 0.79 | 3.27 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 15.46 | 0.00 | 2.117 | 12.23 | 0.06 | 8.2 | 91.8 | 0.0 | -1.07 | 0.43 | 0.82 | 0.85 | 2.91 | 13830 | 1714 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YND | 33959 | 2023-04-24 | 2022-07-30 | 3.29 | 3.46 | 3.34 | 3.4 | 0.007 | 0.78 | 1.0 | 0.05 | 17.06 | 0.01 | 2.213 | 8.16 | 1.46 | 10.5 | 89.2 | 0.2 | -4.25 | 0.81 | 0.86 | 2.29 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 17.56 | 0.00 | 2.236 | 6.73 | 0.22 | 9.8 | 90.2 | 0.0 | -1.55 | 1.14 | 0.83 | 0.89 | 2.10 | 18098 | 2115 | 3 | 38 | 0 | 0 | 0 | logfile |
✘ | 7JR7 | 22443 | 2023-04-23 | 2020-08-11 | 3.3 | 3.18 | — | 3.3 | 0.010 | 1.34 | 4.0 | 0.08 | 11.83 | 0.01 | 2.254 | 3.49 | 0.57 | 2.6 | 97.0 | 0.4 | 0.62 | 0.65 | 0.79 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15799 | 2020 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6S44 | 10097 | 2023-04-24 | 2019-06-26 | 3.19 | 3.30 | 3.41 | 3.2 | 0.010 | 0.92 | 0.0 | 0.06 | 16.63 | 0.01 | 2.324 | 10.10 | 11.02 | 9.7 | 90.3 | 0.0 | -3.81 | 0.71 | 0.82 | 3.28 | 3.2 | 0.007 | 0.76 | 0.0 | 0.05 | 16.97 | 0.01 | 2.148 | 22.58 | 1.13 | 12.4 | 87.6 | 0.0 | -2.84 | 0.69 | 0.73 | 0.85 | 3.37 | 67200 | 8760 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i1T | 35121 | 2023-04-26 | 2023-01-13 | 2.8 | 2.69 | 2.76 | 2.7 | 0.007 | 0.70 | 0.0 | 0.05 | 14.07 | 0.00 | 2.196 | 7.64 | 0.08 | 3.2 | 96.6 | 0.2 | -1.01 | 0.58 | 0.87 | 4.08 | 2.7 | 0.002 | 0.55 | 0.0 | 0.04 | 15.55 | 0.00 | 2.181 | 7.49 | 1.30 | 2.5 | 97.3 | 0.2 | -0.65 | 0.28 | 0.58 | 0.88 | 3.21 | 22939 | 3003 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVN | 32854 | 2023-04-27 | 2022-02-10 | 3.4 | 2.96 | — | 3.5 | 0.006 | 0.83 | 0.0 | 0.05 | 8.23 | 0.01 | 2.348 | 1.91 | 0.11 | 3.7 | 96.2 | 0.1 | -3.13 | 0.72 | 0.68 | 1.19 | 3.5 | 0.004 | 0.76 | 0.0 | 0.05 | 14.62 | 0.00 | 2.080 | 12.93 | 0.69 | 3.1 | 96.9 | 0.0 | -0.23 | 1.22 | 0.79 | 0.78 | 1.62 | 24805 | 3162 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o7F | 12746 | 2023-04-22 | 2021-04-13 | 3.15 | 3.42 | 3.19 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.02 | 0.00 | 1.932 | 7.93 | 0.16 | 2.5 | 97.5 | 0.0 | 0.48 | 0.70 | 0.77 | 2.29 | 3.4 | 0.004 | 0.62 | 0.0 | 0.04 | 15.84 | 0.00 | 2.090 | 10.14 | 0.32 | 2.5 | 97.5 | 0.0 | 0.49 | 0.53 | 0.68 | 0.74 | 2.16 | 11170 | 1420 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVQ | 32857 | 2023-04-29 | 2022-02-10 | 4.04 | 4.06 | — | 4.0 | 0.007 | 1.05 | 6.0 | 0.07 | 9.79 | 0.01 | 2.339 | 3.72 | 0.46 | 5.2 | 94.6 | 0.2 | -3.46 | 0.66 | 0.50 | — | 2.6 | 0.003 | 0.74 | 0.0 | 0.05 | 11.40 | 0.01 | 2.061 | 14.61 | 0.03 | 3.9 | 96.1 | 0.1 | -1.44 | 1.11 | 0.72 | 0.61 | — | 29527 | 3741 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPM | 14858 | 2023-04-25 | 2022-04-27 | 2.81 | 3.56 | 2.81 | 3.0 | 0.002 | 0.49 | 0.0 | 0.04 | 13.14 | 0.00 | 1.820 | 6.91 | 0.14 | 3.5 | 96.4 | 0.1 | -0.23 | 0.93 | 0.88 | 3.42 | 3.0 | 0.003 | 0.68 | 0.0 | 0.04 | 15.22 | 0.00 | 2.137 | 9.74 | 1.07 | 3.4 | 96.5 | 0.0 | 0.72 | 1.06 | 0.93 | 0.91 | 3.15 | 19330 | 2412 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WVP | 32856 | 2023-04-29 | 2022-02-10 | 3.7 | 3.43 | — | 3.8 | 0.005 | 0.85 | 2.0 | 0.06 | 13.45 | 0.01 | 2.335 | 3.35 | 0.40 | 3.9 | 95.9 | 0.1 | -4.59 | 0.70 | 0.59 | 0.30 | 3.8 | 0.004 | 0.82 | 1.0 | 0.05 | 15.92 | 0.00 | 2.060 | 17.53 | 0.61 | 5.2 | 94.8 | 0.0 | -1.57 | 1.54 | 0.75 | 0.67 | 0.41 | 29601 | 3750 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XCZ | 33130 | 2023-04-23 | 2022-03-26 | 3.2 | 3.36 | 3.17 | 3.3 | 0.004 | 0.51 | 0.0 | 0.05 | 15.75 | 0.00 | 2.009 | 5.37 | 0.90 | 8.1 | 91.8 | 0.1 | -3.76 | 0.72 | 0.82 | 3.54 | 3.3 | 0.003 | 0.56 | 0.0 | 0.05 | 15.99 | 0.00 | 1.910 | 5.43 | 0.00 | 6.5 | 93.4 | 0.1 | -0.77 | 0.67 | 0.73 | 0.85 | 3.39 | 15836 | 1069 | 5 | 0 | 0 | 0 | 7747 | logfile |
✔ | 7UVL | 26813 | 2023-04-24 | 2022-05-02 | 3.56 | 4.29 | 3.57 | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 12.92 | 0.00 | 2.161 | 13.72 | 0.00 | 5.2 | 94.8 | 0.0 | -0.68 | 0.90 | 0.82 | 1.57 | 3.8 | 0.005 | 0.67 | 0.0 | 0.04 | 14.80 | 0.00 | 2.044 | 18.46 | 0.22 | 7.1 | 92.9 | 0.0 | -0.75 | 0.88 | 0.90 | 0.83 | 1.07 | 16508 | 2154 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Z22 | 14455 | 2023-04-24 | 2022-02-25 | 2.95 | 3.65 | 3.03 | 3.3 | 0.003 | 0.51 | 0.0 | 0.04 | 11.34 | 0.00 | 2.198 | 6.76 | 0.00 | 1.8 | 98.2 | 0.0 | 2.55 | 0.53 | 0.47 | 1.52 | 3.4 | 0.003 | 0.77 | 0.0 | 0.04 | 16.88 | 0.00 | 2.263 | 9.93 | 3.87 | 2.1 | 97.9 | 0.0 | 2.88 | 1.90 | 0.71 | 0.88 | 2.84 | 18492 | 2268 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WQ7 | 6675 | 2023-04-20 | 2016-11-23 | 3.04 | 3.17 | — | 3.1 | 0.009 | 1.02 | 15.0 | 0.06 | 11.52 | 0.01 | 1.901 | 26.96 | 0.49 | 4.1 | 95.3 | 0.6 | -2.95 | 0.70 | 0.83 | 2.90 | 3.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.02 | 0.00 | 2.148 | 12.40 | 0.31 | 2.4 | 97.4 | 0.2 | 0.04 | 0.64 | 0.70 | 0.83 | 2.00 | 54480 | 7080 | 15 | 0 | 0 | 0 | 0 | logfile |