Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q7P	18228	2023-09-27	2023-08-16	3.28	3.24	3.20	3.3	0.011	1.82	0.0	0.09	11.62	0.01	2.479	0.00	0.00	1.4	98.6	0.0	-1.91	0.36	0.78	5.16	3.3	0.006	0.69	0.0	0.05	16.90	0.00	2.209	7.08	1.79	1.6	98.4	0.0	-2.12	1.47	0.42	0.87	5.25	3402	450	6	0	0	0	0	logfile
✔	8FY4	29552	2023-09-28	2023-01-25	2.57	2.06	2.58	2.8	0.003	0.57	0.0	0.04	14.87	0.00	2.189	8.90	1.87	1.8	98.2	0.0	2.42	0.63	0.62	1.36	1.9	0.004	0.62	0.0	0.04	17.27	0.00	2.192	10.61	2.22	2.9	97.1	0.0	1.81	1.18	0.79	0.79	2.91	7800	989	3	0	0	0	0	logfile
✔	8Q88	18249	2023-09-27	2023-08-18	2.95	2.99	2.96	3.1	0.011	1.82	1.0	0.09	9.88	0.01	2.489	0.85	0.25	4.3	95.7	0.0	-1.51	0.41	0.83	6.19	3.1	0.003	0.70	0.0	0.05	13.61	0.00	2.296	6.79	1.26	2.0	98.0	0.0	-2.37	1.34	0.40	0.87	5.10	3468	456	6	0	0	0	0	logfile
✔	8CE1	16597	2023-09-30	2023-02-01	3.47	3.70	3.42	3.7	0.006	1.08	0.0	0.06	15.03	0.01	2.189	6.45	0.42	2.7	97.2	0.1	-0.68	0.66	0.82	2.33	3.7	0.003	0.66	0.0	0.04	16.02	0.01	2.228	7.87	0.00	2.4	97.6	0.0	1.76	0.99	0.72	0.87	1.98	11438	1462	8	0	0	0	0	logfile
✔	8G2V	29682	2023-09-27	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	2.8	0.003	0.68	0.0	0.06	17.30	0.00	2.330	18.40	1.67	2.6	97.4	0.0	-3.25	2.56	0.43	0.83	7.86	1660	210	10	0	0	0	0	logfile
✔	7Y5W	33627	2023-09-29	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.68	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.005	0.89	0.0	0.04	28.98	0.01	2.069	23.02	0.40	2.0	98.0	0.0	0.85	0.95	0.90	0.85	0.98	8811	579	10	202	0	0	0	logfile
✔	8Q9F	18279	2023-09-28	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.64	0.0	0.05	15.99	0.00	2.249	3.13	0.00	2.5	97.5	0.0	-2.11	1.84	0.44	0.86	7.01	6390	414	6	0	0	0	3258	logfile
✔	8GAQ	29904	2023-09-28	2023-02-23	3.73	4.01	3.78	4.0	0.005	0.70	0.0	0.04	16.74	0.00	2.278	5.61	0.15	1.7	98.3	0.0	-3.14	0.69	0.78	2.28	4.0	0.004	0.75	0.0	0.04	17.55	0.00	2.229	10.32	0.15	2.1	97.9	0.0	-0.16	1.18	0.69	0.79	1.19	5825	735	5	0	0	0	0	logfile
✔	7EEi	31077	2023-09-29	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.65	0.0	0.04	15.23	0.00	2.159	7.84	0.12	5.2	94.8	0.0	-0.01	1.24	0.80	0.80	2.19	9825	1400	1	0	0	0	0	logfile
✔	8Q7L	18219	2023-09-27	2023-08-16	2.82	2.80	2.86	2.9	0.011	1.90	4.0	0.11	11.68	0.01	2.159	2.03	0.00	4.4	95.6	0.0	-2.15	0.34	0.80	5.45	2.9	0.003	0.67	0.0	0.05	17.48	0.00	2.272	4.65	0.78	1.6	98.4	0.0	-2.24	0.89	0.39	0.90	5.38	3375	441	6	0	0	0	0	logfile
✔	8CPE	16780	2023-09-28	2023-03-02	4.0	3.90	2.90	4.2	0.002	0.93	0.0	0.06	12.17	0.00	2.224	3.26	0.00	4.1	95.9	0.0	-3.80	0.54	0.71	—	4.3	0.003	0.71	0.0	0.05	14.44	0.00	2.166	10.52	0.00	11.2	88.8	0.0	-4.96	1.92	0.56	0.75	—	5520	385	5	0	0	0	2615	logfile
✔	8Q7T	18233	2023-09-30	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	3.0	0.003	0.57	0.0	0.05	16.68	0.00	2.070	5.56	2.29	2.7	97.3	0.0	-1.43	1.53	0.33	0.82	4.46	10083	654	9	0	0	0	5136	logfile
✔	8JW4	36679	2023-09-29	2023-06-28	3.13	3.85	3.39	3.8	0.005	0.76	0.0	0.05	9.53	0.00	2.214	2.01	0.28	8.2	91.8	0.0	-4.11	0.63	0.70	2.66	3.7	0.003	0.66	0.0	0.04	14.13	0.00	2.179	5.92	0.19	5.7	94.3	0.0	-1.07	1.35	0.63	0.73	0.99	9582	1191	1	0	0	0	0	logfile
✔	8EAY	27990	2023-09-29	2022-08-30	3.33	3.56	3.21	3.6	0.008	1.14	4.0	0.09	14.18	0.01	2.243	5.38	0.76	9.5	90.1	0.3	-2.33	0.58	0.63	1.83	3.6	0.003	0.61	0.0	0.04	15.33	0.00	2.044	7.48	0.57	9.5	90.3	0.2	-2.01	1.21	0.62	0.71	2.17	9479	626	3	0	0	0	4718	logfile
✔	7YUF	34105	2023-09-29	2022-08-17	3.29	3.54	3.31	3.7	0.006	0.80	0.0	0.05	12.37	0.01	2.232	1.74	0.00	3.8	96.2	0.0	-0.26	0.57	0.73	2.51	3.6	0.004	0.64	0.0	0.04	14.88	0.00	2.223	5.45	0.33	4.1	95.9	0.0	1.07	0.63	0.61	0.80	1.30	8415	1105	5	0	0	0	0	logfile
✔	7XF5	33169	2023-09-29	2022-04-01	3.9	3.53	3.33	3.5	0.003	0.61	0.0	0.04	14.14	0.00	2.222	8.54	0.58	2.3	97.6	0.1	1.11	0.51	0.67	1.39	3.5	0.003	0.65	0.0	0.04	16.47	0.00	2.260	10.54	0.49	3.4	96.6	0.0	1.72	2.28	0.55	0.72	1.40	9640	1239	2	0	0	0	0	logfile
✔	8Q9K	18284	2023-09-28	2023-08-20	3.2	3.24	3.02	3.3	0.011	2.00	0.0	0.09	9.09	0.01	2.527	0.79	0.00	5.1	94.9	0.0	-1.94	0.39	0.82	6.44	3.2	0.003	0.57	0.0	0.05	14.49	0.00	2.134	4.92	0.56	3.5	96.5	0.0	-1.36	2.69	0.35	0.84	5.27	6306	408	6	0	0	0	3216	logfile
✔	8Q9o	18287	2023-09-28	2023-08-20	3.1	3.14	2.95	3.1	0.012	1.87	0.0	0.09	11.25	0.01	2.518	0.28	3.03	3.0	97.0	0.0	-1.40	0.32	0.80	5.39	3.1	0.003	0.59	0.0	0.05	13.90	0.00	2.051	4.41	0.25	2.7	97.3	0.0	-1.16	3.55	0.32	0.81	5.30	7032	450	6	0	0	0	3588	logfile
✔	7RNX	24582	2023-09-28	2021-07-30	3.42	3.46	—	3.4	0.013	1.07	0.0	0.06	14.18	0.01	2.266	4.77	0.44	5.2	94.8	0.0	-4.11	0.69	0.84	1.92	3.5	0.003	0.60	0.0	0.04	15.22	0.00	2.200	9.25	0.29	3.6	96.4	0.0	1.31	0.39	0.68	0.85	1.94	6758	900	2	0	0	0	0	logfile
✔	6XYE	10649	2023-09-29	2020-01-30	4.3	4.37	4.28	4.3	0.010	1.29	0.0	0.09	10.03	0.01	2.315	11.42	0.00	4.7	95.3	0.0	-3.09	0.71	0.69	—	4.3	0.004	0.76	0.0	0.05	12.39	0.00	2.150	16.05	0.00	8.4	91.6	0.0	-1.52	1.71	0.72	0.70	—	9834	1293	6	0	0	0	0	logfile

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