The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NT9 | 0506 | 2023-04-21 | 2019-01-28 | 3.3 | 3.42 | — | 3.3 | 0.010 | 0.89 | 0.0 | 0.06 | 9.66 | 0.01 | 2.250 | 1.52 | 0.18 | 3.5 | 96.5 | 0.0 | -2.03 | 0.81 | 0.86 | 3.98 | 3.3 | 0.003 | 0.50 | 0.0 | 0.04 | 14.15 | 0.00 | 2.226 | 4.50 | 0.18 | 1.8 | 98.2 | 0.0 | 2.60 | 0.58 | 0.83 | 0.88 | 3.12 | 9906 | 1228 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5V4S | 8632 | 2023-04-21 | 2017-03-10 | 4.2 | 4.02 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.58 | 0.73 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.67 | 0.00 | 2.165 | 4.59 | 0.00 | 2.4 | 97.6 | 0.0 | 3.09 | 1.04 | 0.57 | 0.72 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y9X | 10740 | 2023-04-24 | 2020-03-10 | 4.4 | 4.70 | 4.26 | 4.4 | 0.012 | 1.07 | 3.0 | 0.11 | 13.05 | 0.01 | 1.344 | 12.07 | 0.45 | 2.0 | 98.0 | 0.0 | -0.96 | 0.69 | 0.74 | — | 4.4 | 0.004 | 0.83 | 0.0 | 0.05 | 13.72 | 0.01 | 2.099 | 20.44 | 0.05 | 3.1 | 96.9 | 0.0 | -0.34 | 1.79 | 0.73 | 0.78 | — | 18418 | 2364 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 8B8T | 15921 | 2023-04-20 | 2022-10-05 | 4.2 | 3.64 | 4.09 | 4.1 | 0.011 | 1.78 | 2.0 | 0.09 | 14.33 | 0.01 | 2.558 | 0.50 | 1.78 | 3.9 | 95.8 | 0.3 | -1.08 | 0.73 | 0.77 | — | 4.0 | 0.008 | 0.97 | 0.0 | 0.05 | 13.59 | 0.01 | 2.070 | 11.18 | 0.00 | 5.9 | 94.1 | 0.0 | -0.32 | 0.52 | 0.74 | 0.78 | — | 7180 | 989 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQ6 | 23482 | 2023-04-20 | 2021-02-13 | 3.28 | 4.07 | 3.16 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 15.77 | 0.00 | 1.549 | 9.45 | 1.41 | 5.5 | 94.4 | 0.2 | -4.83 | 0.90 | 0.85 | 3.36 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 16.25 | 0.00 | 2.131 | 7.09 | 0.18 | 3.9 | 96.1 | 0.0 | -0.06 | 1.00 | 0.91 | 0.87 | 1.76 | 5267 | 672 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZQP | 14873 | 2023-04-24 | 2022-05-02 | 3.6 | 2.97 | 3.42 | 3.0 | 0.003 | 0.48 | 0.0 | 0.04 | 13.61 | 0.00 | 2.048 | 5.00 | 0.00 | 3.8 | 96.2 | 0.0 | -0.86 | 0.64 | 0.80 | 2.81 | 3.0 | 0.005 | 0.59 | 0.0 | 0.05 | 15.62 | 0.00 | 2.125 | 9.22 | 0.30 | 4.7 | 95.3 | 0.0 | -0.85 | 0.43 | 0.65 | 0.80 | 2.59 | 18315 | 2289 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5X0Y | 6700 | 2023-04-24 | 2017-01-23 | 4.69 | 4.70 | — | 4.5 | 0.012 | 1.12 | 0.0 | 0.05 | 25.78 | 0.01 | 1.932 | 49.72 | 0.26 | 10.8 | 88.7 | 0.5 | -5.59 | 0.86 | 0.75 | — | 4.5 | 0.004 | 0.71 | 0.0 | 0.04 | 25.40 | 0.00 | 2.004 | 17.90 | 0.00 | 5.4 | 94.5 | 0.2 | 0.33 | 0.95 | 0.89 | 0.82 | — | 16798 | 1349 | 11 | 292 | 0 | 0 | 0 | logfile |
✔ | 6CV9 | 7637 | 2023-04-21 | 2018-03-27 | 3.8 | 4.02 | 3.77 | 3.9 | 0.006 | 1.00 | 0.0 | 0.05 | 9.51 | 0.01 | 2.316 | 6.18 | 0.00 | 8.7 | 91.3 | 0.0 | -3.93 | 0.77 | 0.75 | 1.07 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.43 | 0.00 | 2.164 | 15.43 | 0.46 | 8.4 | 91.6 | 0.0 | 0.37 | 3.39 | 0.80 | 0.79 | 1.25 | 10032 | 1264 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XTB | 10618 | 2023-04-19 | 2020-01-15 | 4.3 | 4.32 | — | 3.9 | 0.006 | 1.17 | 0.0 | 0.07 | 8.68 | 0.00 | 2.369 | 3.00 | 0.00 | 15.6 | 84.4 | 0.0 | -4.66 | 0.32 | 0.43 | — | 4.1 | 0.005 | 1.12 | 0.0 | 0.05 | 9.13 | 0.00 | 2.119 | 10.22 | 0.00 | 25.1 | 74.9 | 0.0 | -5.72 | 2.48 | 0.34 | 0.65 | — | 1161 | 235 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EKo | 31171 | 2023-04-26 | 2021-04-06 | 3.3 | 2.87 | — | 3.3 | 0.009 | 0.99 | 1.0 | 0.06 | 15.70 | 0.01 | 2.119 | 13.07 | 2.55 | 6.1 | 93.8 | 0.1 | -0.97 | 0.65 | 0.78 | 2.70 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 16.93 | 0.00 | 2.058 | 10.62 | 0.46 | 3.6 | 96.4 | 0.0 | 1.15 | 1.42 | 0.62 | 0.79 | 2.09 | 22470 | 2890 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D64 | 27216 | 2023-04-22 | 2022-06-06 | 3.14 | 3.25 | 3.11 | 3.2 | 0.007 | 0.81 | 0.0 | 0.06 | 13.69 | 0.01 | 2.275 | 7.13 | 0.00 | 6.6 | 93.4 | 0.0 | -3.61 | 0.72 | 0.84 | 3.27 | 3.2 | 0.005 | 0.65 | 0.0 | 0.05 | 15.07 | 0.00 | 2.198 | 6.33 | 0.58 | 6.2 | 93.8 | 0.0 | -0.53 | 0.37 | 0.73 | 0.87 | 3.23 | 12545 | 1540 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LMW | 0922 | 2023-04-22 | 2019-12-26 | 3.4 | 3.55 | 3.21 | 3.5 | 0.007 | 0.91 | 0.0 | 0.05 | 15.33 | 0.01 | 2.292 | 2.21 | 0.63 | 1.6 | 98.4 | 0.0 | -5.34 | 0.53 | 0.73 | 3.03 | 3.5 | 0.002 | 0.63 | 0.0 | 0.04 | 16.35 | 0.00 | 2.228 | 5.83 | 1.18 | 1.1 | 98.9 | 0.0 | 2.21 | 0.44 | 0.66 | 0.83 | 2.32 | 11624 | 1472 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7U5J | 26352 | 2023-04-21 | 2022-03-02 | 2.96 | 2.93 | 3.32 | 3.0 | 0.004 | 0.54 | 0.0 | 0.04 | 10.54 | 0.01 | 2.215 | 9.03 | 2.15 | 2.3 | 97.7 | 0.0 | 0.21 | 0.56 | 0.72 | 3.53 | 3.0 | 0.004 | 0.57 | 0.0 | 0.04 | 14.75 | 0.00 | 2.172 | 12.33 | 1.79 | 2.7 | 97.3 | 0.0 | 1.01 | 0.36 | 0.62 | 0.76 | 2.61 | 10804 | 1376 | 8 | 0 | 0 | 284 | 0 | logfile |
✔ | 7K8A | 22724 | 2023-04-21 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.003 | 0.78 | 0.0 | 0.04 | 15.86 | 0.01 | 2.225 | 15.74 | 0.34 | 4.6 | 95.3 | 0.1 | -0.56 | 0.46 | 0.42 | 0.55 | 0.22 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RTC | 4997 | 2023-04-25 | 2019-05-23 | 3.96 | 4.05 | 3.97 | 4.0 | 0.007 | 0.91 | 0.0 | 0.05 | 14.96 | 0.01 | 2.295 | 1.19 | 0.00 | 3.9 | 96.1 | 0.0 | -3.83 | 0.68 | 0.80 | 1.58 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 16.05 | 0.00 | 2.258 | 6.35 | 0.38 | 5.4 | 94.6 | 0.0 | 0.85 | 0.62 | 0.69 | 0.81 | 1.74 | 19374 | 1242 | 2 | 0 | 0 | 0 | 9804 | logfile |
✔ | 6HE5 | 0210 | 2023-04-27 | 2018-08-20 | 4.12 | 4.16 | — | 4.2 | 0.036 | 3.51 | 183.0 | 0.20 | 17.65 | 0.03 | 2.236 | 2.09 | 4.51 | 5.3 | 92.5 | 2.2 | -2.68 | 0.54 | 0.60 | — | 4.1 | 0.005 | 0.88 | 0.0 | 0.05 | 14.49 | 0.00 | 2.074 | 22.24 | 0.00 | 4.4 | 95.4 | 0.2 | -0.85 | 1.76 | 0.58 | 0.76 | — | 24633 | 3162 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oGM | 12884 | 2023-04-24 | 2021-05-06 | 3.7 | 3.96 | 3.87 | 3.8 | 0.015 | 1.84 | 9.0 | 0.11 | 16.90 | 0.01 | 2.245 | 5.94 | 3.12 | 3.6 | 96.3 | 0.0 | -1.16 | 0.85 | 0.83 | 2.45 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.22 | 0.00 | 2.161 | 7.18 | 0.40 | 2.9 | 97.1 | 0.0 | 0.75 | 1.27 | 0.83 | 0.80 | 2.12 | 17683 | 2454 | 10 | 49 | 0 | 0 | 0 | logfile |
✔ | 7D3S | 30566 | 2023-04-20 | 2020-09-20 | 2.9 | 2.73 | 2.75 | 2.8 | 0.004 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.237 | 10.24 | 0.00 | 4.0 | 96.0 | 0.0 | -2.28 | 0.56 | 0.75 | 3.07 | 2.8 | 0.003 | 0.54 | 0.0 | 0.04 | 16.90 | 0.00 | 2.096 | 9.21 | 0.78 | 3.1 | 96.9 | 0.0 | 0.98 | 0.48 | 0.60 | 0.79 | 2.75 | 8338 | 1048 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XZX | 33533 | 2023-04-25 | 2022-06-03 | 4.53 | 5.42 | 4.49 | 4.5 | 0.006 | 0.99 | 0.0 | 0.06 | 25.64 | 0.00 | 1.688 | 10.77 | 0.15 | 1.7 | 98.3 | 0.0 | 0.69 | 0.69 | 0.37 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.04 | 25.63 | 0.00 | 2.095 | 14.00 | 0.00 | 2.6 | 97.4 | 0.0 | 1.09 | 1.71 | 0.90 | 0.82 | — | 19270 | 1554 | 14 | 342 | 0 | 0 | 0 | logfile |
✔ | 7U5K | 26353 | 2023-04-23 | 2022-03-02 | 2.78 | 2.62 | 2.83 | 2.7 | 0.003 | 0.64 | 0.0 | 0.04 | 17.75 | 0.00 | 1.465 | 8.53 | 2.48 | 1.9 | 98.1 | 0.0 | 0.18 | 0.61 | 0.77 | 3.89 | 2.7 | 0.003 | 0.62 | 0.0 | 0.04 | 17.98 | 0.00 | 2.022 | 10.23 | 3.09 | 2.5 | 97.5 | 0.0 | 0.29 | 0.36 | 0.72 | 0.83 | 3.85 | 15316 | 1972 | 8 | 0 | 0 | 148 | 0 | logfile |