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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7WY8 | 32887 | 2024-03-11 | 2022-02-15 | 2.83 | 2.24 | — | 2.0 | 0.007 | 0.81 | 0.0 | 0.05 | 12.03 | 0.01 | 2.220 | 1.00 | 0.00 | 4.1 | 95.9 | 0.0 | -0.39 | 0.76 | 0.76 | 3.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8049 | 1015 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WZ7 | 32905 | 2024-03-11 | 2022-02-17 | 2.83 | 2.26 | — | 2.0 | 0.010 | 0.95 | 0.0 | 0.06 | 11.50 | 0.01 | 2.230 | 6.56 | 0.00 | 5.4 | 94.6 | 0.0 | -0.69 | 0.71 | 0.71 | 2.86 | 2.0 | 0.005 | 0.70 | 0.0 | 0.04 | 14.91 | 0.00 | 2.133 | 12.37 | 2.52 | 4.7 | 95.3 | 0.0 | 0.41 | 1.18 | 0.72 | 0.73 | 1.62 | 8676 | 1108 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o2o | 0610 | 2024-03-16 | 2019-02-24 | 4.53 | 4.47 | — | 4.3 | 0.006 | 1.00 | 1.0 | 0.06 | 14.75 | 0.01 | 2.191 | 7.84 | 0.42 | 11.2 | 88.8 | 0.0 | -4.31 | 0.78 | 0.80 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 13.75 | 0.00 | 2.030 | 14.78 | 0.04 | 10.9 | 89.1 | 0.0 | -2.85 | 0.57 | 0.78 | 0.81 | — | 72637 | 9218 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 8C8P | 16490 | 2024-03-10 | 2023-01-20 | 4.1 | 5.09 | 4.13 | 5.5 | 0.002 | 0.67 | 0.0 | 0.05 | 13.50 | 0.00 | 2.267 | 6.06 | 0.00 | 2.6 | 97.4 | 0.0 | -2.08 | 0.66 | 0.67 | — | 5.0 | 0.004 | 0.74 | 0.0 | 0.05 | 13.71 | 0.00 | 2.115 | 22.57 | 0.00 | 8.1 | 91.9 | 0.0 | -1.12 | 1.09 | 0.68 | 0.73 | — | 2449 | 314 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6LMK | 0917 | 2024-03-14 | 2019-12-26 | 3.7 | 3.89 | — | 3.8 | 0.009 | 0.96 | 0.0 | 0.06 | 15.10 | 0.01 | 2.283 | 7.02 | 0.62 | 6.5 | 93.5 | 0.0 | -4.19 | 0.68 | 0.82 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9240 | 1178 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8BMW | 16126 | 2024-03-20 | 2022-11-11 | 3.5 | 4.40 | — | 4.0 | 0.003 | 0.54 | 1.0 | 0.04 | 12.90 | 0.00 | 2.196 | 11.99 | 0.49 | 6.1 | 93.8 | 0.1 | 0.69 | 0.90 | 0.85 | 0.96 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 15.73 | 0.00 | 2.092 | 18.81 | 3.69 | 6.0 | 93.8 | 0.1 | 0.18 | 0.80 | 0.90 | 0.85 | 0.70 | 28658 | 3475 | 15 | 48 | 0 | 0 | 0 | logfile |
✔ | 8PPo | 17806 | 2024-03-10 | 2023-07-07 | 2.0 | 2.30 | 1.95 | 2.2 | 0.008 | 1.20 | 1.0 | 0.07 | 13.41 | 0.01 | 2.625 | 0.29 | 0.00 | 6.7 | 93.3 | 0.0 | 0.71 | 0.58 | 0.84 | 6.50 | 2.2 | 0.004 | 0.53 | 0.0 | 0.06 | 14.00 | 0.00 | 2.289 | 0.29 | 0.52 | 0.0 | 100.0 | 0.0 | 1.18 | 0.37 | 0.50 | 0.88 | 5.44 | 1696 | 240 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EL8 | 28224 | 2024-03-10 | 2022-09-23 | 3.2 | 3.53 | 3.33 | 3.5 | 0.007 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.403 | 2.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.75 | 0.66 | 0.85 | 2.31 | 3.5 | 0.002 | 0.43 | 0.0 | 0.04 | 15.09 | 0.00 | 2.354 | 2.04 | 0.90 | 2.3 | 97.7 | 0.0 | 1.36 | 0.25 | 0.67 | 0.85 | 2.05 | 4467 | 597 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VDD | 31914 | 2024-03-15 | 2021-09-06 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11940 | 1044 | 10 | 0 | 0 | 0 | 3736 | logfile |
✔ | 7SEP | 25074 | 2024-03-11 | 2021-10-01 | 3.8 | 2.53 | 3.76 | 1.6 | 0.006 | 0.66 | 0.0 | 0.05 | 12.76 | 0.01 | 2.155 | 10.23 | 8.22 | 5.0 | 95.0 | 0.0 | -0.19 | 0.72 | 0.72 | 2.36 | 1.9 | 0.004 | 0.68 | 0.0 | 0.05 | 16.57 | 0.01 | 2.155 | 14.46 | 5.60 | 4.4 | 95.6 | 0.0 | 0.05 | 0.84 | 0.72 | 0.72 | 2.25 | 7641 | 930 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X8M | 22094 | 2024-03-16 | 2020-06-01 | 2.2 | 2.07 | 2.27 | 2.2 | 0.005 | 0.63 | 0.0 | 0.05 | 13.91 | 0.01 | 2.264 | 5.48 | 0.82 | 3.3 | 96.7 | 0.0 | -1.41 | 0.74 | 0.86 | 6.01 | 2.1 | 0.003 | 0.61 | 0.0 | 0.05 | 15.94 | 0.00 | 2.153 | 4.34 | 0.78 | 3.1 | 96.9 | 0.0 | 0.05 | 0.62 | 0.76 | 0.88 | 5.74 | 133440 | 16800 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F7X | 28912 | 2024-03-11 | 2022-11-20 | 3.28 | 3.38 | 3.18 | 3.4 | 0.004 | 0.88 | 0.0 | 0.05 | 8.64 | 0.01 | 2.274 | 2.87 | 0.10 | 2.1 | 97.9 | 0.0 | 0.54 | 0.59 | 0.78 | 2.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8902 | 1145 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oKT | 20104 | 2024-03-20 | 2019-04-15 | 4.2 | 4.31 | — | 4.2 | 0.007 | 0.96 | 0.0 | 0.06 | 15.35 | 0.01 | 2.188 | 7.94 | 1.60 | 11.9 | 88.1 | 0.0 | -4.31 | 0.73 | 0.81 | — | 4.2 | 0.003 | 0.64 | 0.0 | 0.04 | 13.82 | 0.00 | 2.087 | 12.61 | 0.20 | 9.1 | 90.9 | 0.0 | -2.47 | 0.55 | 0.73 | 0.81 | — | 27048 | 3451 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N76 | 24221 | 2024-03-11 | 2021-06-09 | 2.9 | 3.57 | 2.96 | 3.3 | 0.005 | 0.64 | 0.0 | 0.07 | 12.16 | 0.00 | 2.074 | 5.80 | 0.00 | 3.3 | 96.7 | 0.0 | 0.22 | 0.70 | 0.83 | 3.50 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 13.92 | 0.00 | 2.222 | 6.07 | 0.84 | 1.4 | 98.6 | 0.0 | 2.33 | 1.13 | 0.69 | 0.84 | 2.18 | 7399 | 1036 | 1 | 0 | 0 | 3 | 0 | logfile |
✔ | 7KJK | 22896 | 2024-03-11 | 2020-10-26 | 3.6 | 3.53 | — | 3.8 | 0.009 | 0.94 | 0.0 | 0.05 | 14.47 | 0.01 | 1.919 | 27.34 | 1.45 | 10.7 | 89.3 | 0.0 | -3.10 | 0.50 | 0.82 | 2.22 | 3.8 | 0.003 | 0.74 | 0.0 | 0.05 | 17.07 | 0.00 | 2.056 | 20.03 | 5.59 | 7.3 | 92.7 | 0.0 | -1.66 | 0.93 | 0.49 | 0.81 | 1.68 | 59088 | 7740 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KXY | 23067 | 2024-03-14 | 2020-12-05 | 4.4 | 4.55 | 4.44 | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 15.13 | 0.01 | 2.197 | 19.28 | 7.18 | 26.0 | 69.8 | 4.2 | -5.90 | 0.63 | 0.60 | — | 4.5 | 0.004 | 0.83 | 0.0 | 0.05 | 14.57 | 0.01 | 2.058 | 24.98 | 0.00 | 17.3 | 82.7 | 0.1 | -4.74 | 0.61 | 0.63 | 0.61 | — | 9510 | 1181 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WY0 | 32883 | 2024-03-11 | 2022-02-15 | 2.83 | 2.21 | — | 2.0 | 0.007 | 0.87 | 0.0 | 0.06 | 11.98 | 0.00 | 1.690 | 7.73 | 0.00 | 6.2 | 93.8 | 0.0 | -1.00 | 0.74 | 0.73 | 3.63 | 2.0 | 0.004 | 0.67 | 0.0 | 0.04 | 15.23 | 0.00 | 2.116 | 12.31 | 2.80 | 5.3 | 94.7 | 0.0 | 0.05 | 0.46 | 0.75 | 0.75 | 2.77 | 8723 | 1112 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EL7 | 28223 | 2024-03-10 | 2022-09-23 | 2.8 | 3.11 | 2.95 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 13.13 | 0.00 | 2.295 | 2.43 | 0.00 | 1.7 | 98.3 | 0.0 | 0.97 | 0.57 | 0.80 | 2.31 | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 14.87 | 0.00 | 2.312 | 1.55 | 1.95 | 1.7 | 98.3 | 0.0 | 0.91 | 0.27 | 0.59 | 0.81 | 2.32 | 4562 | 604 | 2 | 0 | 0 | 5 | 0 | logfile |
✔ | 6A70 | 6991 | 2024-03-16 | 2018-06-29 | 3.6 | 4.21 | — | 3.7 | 0.009 | 1.20 | 0.0 | 0.06 | 12.37 | 0.01 | 2.200 | 4.77 | 1.28 | 9.2 | 90.7 | 0.1 | -6.41 | 0.52 | 0.57 | 0.70 | 3.7 | 0.003 | 0.79 | 0.0 | 0.04 | 14.79 | 0.00 | 2.220 | 8.87 | 2.49 | 5.3 | 94.7 | 0.0 | -0.91 | 2.46 | 0.57 | 0.71 | 0.71 | 15142 | 2086 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VAL | 21142 | 2024-03-18 | 2019-12-17 | 3.87 | 4.25 | — | 4.2 | 0.005 | 0.74 | 0.0 | 0.04 | 14.40 | 0.00 | 2.052 | 9.70 | 1.02 | 6.0 | 94.0 | 0.0 | -3.34 | 0.66 | 0.73 | 2.18 | 4.2 | 0.004 | 0.71 | 0.0 | 0.04 | 16.79 | 0.00 | 2.094 | 7.55 | 3.66 | 3.2 | 96.8 | 0.0 | 1.12 | 2.44 | 0.69 | 0.80 | 1.79 | 21615 | 2827 | 11 | 0 | 0 | 0 | 0 | logfile |