Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NT9	0506	2023-04-21	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.003	0.50	0.0	0.04	14.15	0.00	2.226	4.50	0.18	1.8	98.2	0.0	2.60	0.58	0.83	0.88	3.12	9906	1228	4	0	0	0	0	logfile
✔	5V4S	8632	2023-04-21	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.003	0.56	0.0	0.04	12.67	0.00	2.165	4.59	0.00	2.4	97.6	0.0	3.09	1.04	0.57	0.72	—	10756	1548	4	0	0	0	0	logfile
✔	6Y9X	10740	2023-04-24	2020-03-10	4.4	4.70	4.26	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.07	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	4.4	0.004	0.83	0.0	0.05	13.72	0.01	2.099	20.44	0.05	3.1	96.9	0.0	-0.34	1.79	0.73	0.78	—	18418	2364	13	0	0	0	0	logfile
✔	8B8T	15921	2023-04-20	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.008	0.97	0.0	0.05	13.59	0.01	2.070	11.18	0.00	5.9	94.1	0.0	-0.32	0.52	0.74	0.78	—	7180	989	4	0	0	0	0	logfile
✔	7LQ6	23482	2023-04-20	2021-02-13	3.28	4.07	3.16	3.5	0.005	0.76	0.0	0.05	15.77	0.00	1.549	9.45	1.41	5.5	94.4	0.2	-4.83	0.90	0.85	3.36	3.5	0.003	0.61	0.0	0.04	16.25	0.00	2.131	7.09	0.18	3.9	96.1	0.0	-0.06	1.00	0.91	0.87	1.76	5267	672	1	0	0	0	0	logfile
✔	7ZQP	14873	2023-04-24	2022-05-02	3.6	2.97	3.42	3.0	0.003	0.48	0.0	0.04	13.61	0.00	2.048	5.00	0.00	3.8	96.2	0.0	-0.86	0.64	0.80	2.81	3.0	0.005	0.59	0.0	0.05	15.62	0.00	2.125	9.22	0.30	4.7	95.3	0.0	-0.85	0.43	0.65	0.80	2.59	18315	2289	6	0	0	0	0	logfile
✔	5X0Y	6700	2023-04-24	2017-01-23	4.69	4.70	—	4.5	0.012	1.12	0.0	0.05	25.78	0.01	1.932	49.72	0.26	10.8	88.7	0.5	-5.59	0.86	0.75	—	4.5	0.004	0.71	0.0	0.04	25.40	0.00	2.004	17.90	0.00	5.4	94.5	0.2	0.33	0.95	0.89	0.82	—	16798	1349	11	292	0	0	0	logfile
✔	6CV9	7637	2023-04-21	2018-03-27	3.8	4.02	3.77	3.9	0.006	1.00	0.0	0.05	9.51	0.01	2.316	6.18	0.00	8.7	91.3	0.0	-3.93	0.77	0.75	1.07	3.9	0.003	0.75	0.0	0.04	15.43	0.00	2.164	15.43	0.46	8.4	91.6	0.0	0.37	3.39	0.80	0.79	1.25	10032	1264	4	0	0	0	0	logfile
✔	6XTB	10618	2023-04-19	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.12	0.0	0.05	9.13	0.00	2.119	10.22	0.00	25.1	74.9	0.0	-5.72	2.48	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7EKo	31171	2023-04-26	2021-04-06	3.3	2.87	—	3.3	0.009	0.99	1.0	0.06	15.70	0.01	2.119	13.07	2.55	6.1	93.8	0.1	-0.97	0.65	0.78	2.70	3.3	0.003	0.61	0.0	0.04	16.93	0.00	2.058	10.62	0.46	3.6	96.4	0.0	1.15	1.42	0.62	0.79	2.09	22470	2890	15	0	0	0	0	logfile
✔	8D64	27216	2023-04-22	2022-06-06	3.14	3.25	3.11	3.2	0.007	0.81	0.0	0.06	13.69	0.01	2.275	7.13	0.00	6.6	93.4	0.0	-3.61	0.72	0.84	3.27	3.2	0.005	0.65	0.0	0.05	15.07	0.00	2.198	6.33	0.58	6.2	93.8	0.0	-0.53	0.37	0.73	0.87	3.23	12545	1540	10	0	0	0	0	logfile
✔	6LMW	0922	2023-04-22	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.002	0.63	0.0	0.04	16.35	0.00	2.228	5.83	1.18	1.1	98.9	0.0	2.21	0.44	0.66	0.83	2.32	11624	1472	8	0	0	0	0	logfile
✔	7U5J	26352	2023-04-21	2022-03-02	2.96	2.93	3.32	3.0	0.004	0.54	0.0	0.04	10.54	0.01	2.215	9.03	2.15	2.3	97.7	0.0	0.21	0.56	0.72	3.53	3.0	0.004	0.57	0.0	0.04	14.75	0.00	2.172	12.33	1.79	2.7	97.3	0.0	1.01	0.36	0.62	0.76	2.61	10804	1376	8	0	0	284	0	logfile
✔	7K8A	22724	2023-04-21	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.003	0.78	0.0	0.04	15.86	0.01	2.225	15.74	0.34	4.6	95.3	0.1	-0.56	0.46	0.42	0.55	0.22	5513	723	1	0	0	0	0	logfile
✔	6RTC	4997	2023-04-25	2019-05-23	3.96	4.05	3.97	4.0	0.007	0.91	0.0	0.05	14.96	0.01	2.295	1.19	0.00	3.9	96.1	0.0	-3.83	0.68	0.80	1.58	4.0	0.003	0.58	0.0	0.04	16.05	0.00	2.258	6.35	0.38	5.4	94.6	0.0	0.85	0.62	0.69	0.81	1.74	19374	1242	2	0	0	0	9804	logfile
✔	6HE5	0210	2023-04-27	2018-08-20	4.12	4.16	—	4.2	0.036	3.51	183.0	0.20	17.65	0.03	2.236	2.09	4.51	5.3	92.5	2.2	-2.68	0.54	0.60	—	4.1	0.005	0.88	0.0	0.05	14.49	0.00	2.074	22.24	0.00	4.4	95.4	0.2	-0.85	1.76	0.58	0.76	—	24633	3162	20	0	0	0	0	logfile
✔	7oGM	12884	2023-04-24	2021-05-06	3.7	3.96	3.87	3.8	0.015	1.84	9.0	0.11	16.90	0.01	2.245	5.94	3.12	3.6	96.3	0.0	-1.16	0.85	0.83	2.45	3.8	0.003	0.68	0.0	0.04	16.22	0.00	2.161	7.18	0.40	2.9	97.1	0.0	0.75	1.27	0.83	0.80	2.12	17683	2454	10	49	0	0	0	logfile
✔	7D3S	30566	2023-04-20	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.003	0.54	0.0	0.04	16.90	0.00	2.096	9.21	0.78	3.1	96.9	0.0	0.98	0.48	0.60	0.79	2.75	8338	1048	6	0	0	0	0	logfile
✔	7XZX	33533	2023-04-25	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	7U5K	26353	2023-04-23	2022-03-02	2.78	2.62	2.83	2.7	0.003	0.64	0.0	0.04	17.75	0.00	1.465	8.53	2.48	1.9	98.1	0.0	0.18	0.61	0.77	3.89	2.7	0.003	0.62	0.0	0.04	17.98	0.00	2.022	10.23	3.09	2.5	97.5	0.0	0.29	0.36	0.72	0.83	3.85	15316	1972	8	0	0	148	0	logfile

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