Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VZ4	32220	2023-07-06	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	29.00	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.66	0.0	0.04	28.48	0.00	2.304	4.22	0.49	0.5	99.5	0.0	2.82	0.80	0.78	0.86	7.64	11843	746	10	290	0	0	0	logfile
✔	6UUS	20901	2023-07-05	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.50	3.27	2.8	97.2	0.0	-2.25	0.57	0.73	3.22	2.3	0.003	0.58	0.0	0.04	17.74	0.00	2.183	9.20	1.84	3.6	96.4	0.0	0.64	1.01	0.63	0.78	3.41	9308	1190	7	0	0	0	0	logfile
✔	6YTK	10917	2023-07-18	2020-04-24	4.07	3.60	4.00	3.9	0.003	0.58	0.0	0.04	13.76	0.00	1.844	7.84	0.00	2.3	97.7	0.0	-0.29	0.65	0.81	—	3.9	0.003	0.58	0.0	0.04	13.81	0.00	2.164	8.57	0.00	3.2	96.8	0.0	2.52	0.74	0.65	0.81	—	41620	5340	20	0	0	0	0	logfile
✔	7X27	32960	2023-07-11	2022-02-25	2.49	2.92	2.58	2.7	0.004	0.75	0.0	0.04	18.74	0.00	1.052	7.39	9.19	6.8	93.2	0.0	-1.20	0.84	0.87	3.07	2.7	0.003	0.60	0.0	0.04	18.27	0.00	2.189	6.68	6.95	6.2	93.8	0.0	-0.39	1.15	0.84	0.88	3.28	22770	2949	3	0	0	0	0	logfile
✔	6H3N	0136	2023-07-13	2018-07-19	3.25	3.45	—	3.4	0.015	1.52	0.0	0.07	10.78	0.01	2.457	1.67	0.00	4.7	94.6	0.7	-0.43	0.77	0.79	4.55	3.4	0.003	0.56	0.0	0.04	14.71	0.00	1.908	5.73	0.25	3.7	96.3	0.0	-0.01	1.46	0.71	0.77	4.07	29319	1881	3	0	0	0	14388	logfile
✔	6BF8	7092	2023-07-07	2017-10-26	4.2	4.69	4.96	7.4	0.007	1.21	0.0	0.06	11.02	0.01	2.252	7.53	0.00	3.8	96.2	0.0	-4.13	0.80	0.71	—	4.0	0.006	0.94	0.0	0.05	12.91	0.01	2.020	39.14	0.00	10.8	89.2	0.0	-2.19	2.36	0.82	0.75	—	15412	1888	2	0	0	0	0	logfile
✔	6TAT	10427	2023-07-04	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.03	0.00	2.263	6.15	0.68	6.4	93.6	0.0	0.32	0.56	0.61	0.78	1.33	6790	820	5	0	0	0	0	logfile
✔	6DZK	8934	2023-07-15	2018-07-05	3.6	3.73	—	3.6	0.008	1.01	19.0	0.11	15.34	0.01	1.999	4.51	0.09	9.8	89.9	0.3	-4.16	0.83	0.79	1.48	3.6	0.007	0.83	8.0	0.10	17.01	0.01	1.800	14.55	0.75	11.7	88.3	0.0	-1.54	3.51	0.83	0.81	1.08	90307	2568	23	1511	0	0	37538	logfile
✘	7A95	11685	2023-07-14	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.53	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29887	3794	4	0	0	0	0	logfile
✔	7ZNK	14804	2023-07-15	2022-04-21	3.9	6.01	—	7.4	0.006	0.88	2.0	0.05	11.83	0.01	1.707	9.96	5.83	6.4	93.3	0.3	-2.12	0.73	0.46	0.00	7.4	0.004	0.98	0.0	0.05	14.36	0.01	2.023	25.83	0.65	7.1	92.8	0.1	0.17	2.42	0.80	0.66	-0.17	88261	11599	32	6	0	0	0	logfile
✔	7A96	11686	2023-07-14	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	6T79	10390	2023-07-06	2019-10-21	3.2	3.08	3.18	3.1	0.006	0.85	0.0	0.05	28.26	0.01	2.178	5.33	0.00	2.0	98.0	0.0	-3.23	0.73	0.78	2.49	3.0	0.004	0.64	0.0	0.04	29.17	0.00	2.180	10.67	0.93	2.2	97.8	0.0	0.89	1.18	0.75	0.82	2.43	12121	776	10	290	0	0	0	logfile
✔	7WUG	32830	2023-07-08	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.51	0.0	0.04	15.01	0.00	2.140	5.28	0.22	3.4	96.5	0.0	1.41	0.27	0.78	0.87	1.92	17515	2239	5	0	0	0	0	logfile
✔	7PD4	13330	2023-07-04	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.003	0.78	0.0	0.04	13.56	0.00	2.126	18.85	0.00	5.8	94.2	0.0	-0.39	1.28	0.73	0.73	—	6676	842	1	0	0	0	0	logfile
✔	5XYi	6788	2023-07-07	2017-07-08	3.35	3.41	—	3.4	0.007	1.11	5.0	0.09	18.00	0.00	1.113	14.15	5.14	8.3	89.0	2.7	-3.65	0.63	0.70	1.75	3.4	0.008	0.79	0.0	0.04	17.38	0.01	2.069	11.73	0.98	8.5	90.6	0.9	-1.50	1.55	0.79	0.84	1.40	65924	4368	34	1490	0	0	0	logfile
✔	6Ji1	9832	2023-07-07	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.004	0.82	0.0	0.04	12.95	0.01	2.136	13.76	0.00	9.5	89.9	0.7	-1.24	0.85	0.58	0.72	—	13992	1848	4	0	0	0	0	logfile
✔	7R0J	14223	2023-07-03	2022-02-02	4.23	4.64	4.43	4.4	0.008	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.005	0.77	0.0	0.04	13.39	0.00	2.092	31.59	0.00	8.5	91.5	0.0	-1.31	0.66	0.76	0.80	—	4669	596	3	0	0	0	0	logfile
✔	7P60	13213	2023-07-17	2021-07-15	3.8	3.10	3.75	3.2	0.004	0.55	0.0	0.04	13.06	0.00	2.130	15.09	5.44	3.9	96.1	0.0	-0.45	0.72	0.69	1.05	2.9	0.002	0.59	0.0	0.04	15.50	0.00	2.154	13.19	0.26	4.3	95.7	0.0	-0.57	1.56	0.70	0.66	0.87	38406	4680	9	0	0	0	0	logfile
✔	6J2Q	9771	2023-07-03	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✘	7QDS	13925	2023-07-07	2021-11-30	3.8	3.53	3.57	3.7	0.005	0.86	1.0	0.05	14.59	0.01	2.067	14.28	0.00	5.7	94.3	0.0	-0.33	0.80	0.82	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13798	1771	4	0	0	0	0	logfile

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