Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EZ2	31386	2023-11-14	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	13.94	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.007	0.85	0.0	0.05	15.80	0.01	1.484	7.35	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7XD7	33138	2023-11-14	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	14.03	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.007	0.67	0.0	0.04	15.11	0.00	1.866	7.88	0.00	0.0	0.0	0.0	—	2.19	0.92	0.92	—	8693	0	1	405	30	0	0	logfile
✔	7XD4	33135	2023-11-14	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	7UVT	26816	2023-11-15	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	18.00	0.01	1.911	21.68	0.00	0.0	0.0	0.0	—	0.46	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	7XSK	33425	2023-11-15	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	15.94	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.006	0.67	0.0	0.04	18.57	0.01	1.759	30.56	0.00	0.0	0.0	0.0	—	1.87	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8HD7	34671	2023-11-14	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	14.67	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.008	0.83	0.0	0.05	16.67	0.01	1.800	17.97	0.00	0.0	0.0	0.0	—	2.13	0.90	0.82	—	8983	0	1	419	28	0	0	logfile
✔	7XD6	33137	2023-11-14	2022-03-26	2.84	3.25	2.83	3.0	0.005	0.74	0.0	0.04	15.28	0.00	1.975	1.30	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.0	0.005	0.67	0.0	0.04	16.16	0.00	1.876	7.55	0.00	0.0	0.0	0.0	—	1.32	0.88	0.89	—	9843	0	3	459	29	0	0	logfile
✔	7PTQ	13633	2023-11-17	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	15.27	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.68	0.0	0.04	19.50	0.00	1.844	43.42	0.00	0.0	0.0	0.0	—	2.74	0.95	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7XD5	33136	2023-11-14	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	13.91	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.004	0.64	0.0	0.04	15.34	0.00	1.950	6.11	0.00	0.0	0.0	0.0	—	1.39	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	7XSN	33428	2023-11-14	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	16.67	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.62	0.0	0.03	16.39	0.00	2.117	21.47	0.00	0.0	0.0	0.0	—	0.29	0.92	0.87	—	8279	0	1	387	0	0	0	logfile
✔	7ZJ5	14741	2023-11-15	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	14.68	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	17.52	0.01	1.638	62.68	0.00	0.0	0.0	0.0	—	3.95	0.94	0.90	—	12014	0	1	374	1	0	4030	logfile
✔	8HD6	34670	2023-11-14	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.73	0.0	0.04	18.64	0.01	1.772	23.51	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	7XSL	33426	2023-11-15	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	16.20	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.70	0.0	0.04	18.25	0.01	1.810	33.93	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7PTL	13630	2023-11-18	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	16.11	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.89	0.0	0.04	21.14	0.01	1.735	83.10	0.00	0.0	0.0	0.0	—	3.49	0.92	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7YG9	33812	2023-11-14	2022-07-11	2.68	3.47	2.76	2.8	0.005	0.51	0.0	0.03	15.25	0.00	1.804	13.88	0.00	0.0	0.0	0.0	—	0.86	0.81	—	2.8	0.006	0.61	0.0	0.04	15.66	0.00	1.870	18.05	0.00	0.0	0.0	0.0	—	0.39	0.92	0.92	—	8630	0	3	404	8	0	0	logfile
✔	7YCH	33739	2023-11-14	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.50	0.00	1.805	31.05	0.00	0.0	0.0	0.0	—	0.90	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	7XSM	33427	2023-11-15	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.77	0.0	0.04	20.06	0.01	1.776	49.17	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7YCi	33740	2023-11-14	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	14.96	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.005	0.62	0.0	0.03	16.16	0.00	1.852	24.59	0.00	0.0	0.0	0.0	—	0.93	0.95	0.90	—	8474	0	2	395	4	0	0	logfile
✔	7XD3	33134	2023-11-14	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	16.04	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.80	0.0	0.04	17.33	0.01	1.680	17.06	0.00	0.0	0.0	0.0	—	1.79	0.87	0.82	—	9062	0	1	423	28	0	0	logfile
✔	7YCG	33738	2023-11-14	2022-07-01	3.18	4.71	3.37	3.5	0.002	0.50	0.0	0.03	14.85	0.00	1.893	15.83	0.00	0.0	0.0	0.0	—	0.94	0.84	—	3.5	0.007	0.67	0.0	0.04	15.91	0.00	1.847	33.58	0.00	0.0	0.0	0.0	—	0.32	0.95	0.90	—	8661	0	2	404	4	0	0	logfile

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