Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JZU	22574	2022-07-02	2020-09-02	3.1	3.26	3.10	3.3	0.015	1.33	0.0	0.08	9.63	0.01	2.509	0.78	0.00	3.3	96.7	0.0	0.23	0.69	0.76	4.15	3.3	0.003	0.59	0.0	0.04	14.23	0.00	2.252	5.19	0.00	3.3	96.7	0.0	0.46	1.61	0.69	0.80	4.31	1987	248	3	0	3	0	0	logfile
✔	7QKF	14040	2022-07-03	2021-12-17	2.83	2.46	2.72	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.53	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	17.62	0.00	2.431	6.09	2.31	3.4	96.6	0.0	-3.47	1.38	0.41	0.86	6.04	3783	249	6	0	0	0	1926	logfile
✔	7M64	23688	2022-07-02	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	6ZS5	11388	2022-07-02	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.01	1.0	0.06	15.42	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.71	0.0	0.04	16.58	0.00	2.239	9.05	0.93	3.2	96.8	0.0	-1.66	2.34	0.67	0.79	2.65	2036	257	4	0	7	0	0	logfile
✔	7DWV	30887	2022-07-02	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	17.63	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.73	0.0	0.05	17.17	0.00	2.189	19.08	0.00	23.2	76.8	0.0	-5.96	1.50	0.41	0.75	2.79	2064	258	6	0	0	0	0	logfile
✔	7JZM	22533	2022-07-02	2020-09-02	3.5	3.74	3.50	3.7	0.015	1.37	0.0	0.08	9.25	0.01	2.420	1.01	0.00	2.0	98.0	0.0	0.75	0.75	0.78	4.01	3.7	0.003	0.69	0.0	0.04	13.98	0.00	2.201	6.85	0.00	2.4	97.6	0.0	0.71	1.24	0.75	0.79	2.69	2033	258	3	0	3	0	0	logfile
✔	7WX4	32876	2022-07-02	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.004	0.55	0.0	0.04	17.63	0.00	2.140	5.46	0.00	6.0	94.0	0.0	-0.17	0.44	0.42	0.82	0.59	1992	260	2	0	0	0	0	logfile
✔	6F1Z	4172	2022-07-02	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7VV0	32133	2022-07-02	2021-11-04	3.5	3.69	—	3.7	0.010	1.49	1.0	0.09	14.09	0.01	2.007	11.04	2.93	4.5	95.5	0.0	-3.44	0.65	0.80	1.76	3.7	0.003	0.61	0.0	0.04	15.15	0.00	2.257	7.66	0.84	4.2	95.8	0.0	2.03	1.25	0.64	0.80	1.65	2175	268	2	0	1	0	0	logfile
✔	7VV4	32137	2022-07-02	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.57	0.01	1.600	16.21	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.71	0.0	0.04	16.91	0.00	2.171	10.81	1.67	1.9	97.7	0.4	2.21	0.61	0.59	0.77	1.02	2181	269	3	0	1	0	0	logfile
✔	7B6E	12053	2022-07-02	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.28	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	5.1	0.004	0.97	0.0	0.05	15.19	0.01	2.191	25.33	0.00	10.6	89.4	0.0	-1.71	0.86	0.61	0.66	—	2205	269	1	0	0	0	0	logfile
✔	7BX7	30235	2022-07-02	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.60	0.0	0.04	13.78	0.00	2.166	11.86	1.72	8.5	91.5	0.0	-5.45	1.13	0.41	0.79	6.15	1896	270	6	0	0	0	0	logfile
✔	7UHB	26511	2022-07-02	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.15	0.00	2.244	9.43	1.90	3.4	96.6	0.0	0.52	2.43	0.70	0.83	3.49	2141	270	3	0	3	0	0	logfile
✘	7VV6	32139	2022-07-02	2021-11-04	3.3	3.47	—	3.5	0.010	1.35	0.0	0.07	17.88	0.01	1.362	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2227	271	1	0	2	0	0	logfile
✔	7VQQ	32092	2022-07-02	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.49	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.72	0.0	0.04	12.71	0.00	2.270	1.38	0.91	4.1	95.9	0.0	-4.95	0.28	0.48	0.87	4.50	1968	273	3	0	0	0	0	logfile
✔	7M65	23689	2022-07-02	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.005	0.96	0.0	0.05	12.00	0.00	2.126	25.73	0.00	17.3	82.7	0.0	-6.33	4.44	0.52	0.73	—	2025	275	10	0	5	0	0	logfile
✘	6ZRQ	11382	2022-07-03	2020-07-14	3.9	4.06	—	4.2	0.009	1.13	0.0	0.05	12.33	0.00	1.219	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3816	276	12	0	0	0	1776	logfile
✔	6VPS	21316	2022-07-02	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	7JV2	22491	2022-07-02	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.74	0.0	0.04	14.94	0.00	2.254	14.51	0.44	6.9	93.1	0.0	-1.07	1.28	0.70	0.77	3.71	2151	282	3	0	0	0	0	logfile
✔	6GX5	0077	2022-07-02	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.005	0.77	0.0	0.05	17.37	0.00	2.112	7.56	0.82	5.4	94.6	0.0	-2.84	0.66	0.83	0.86	4.48	2133	282	3	0	0	0	0	logfile

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