Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7C1D	30269	2021-11-01	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.002	0.60	0.0	0.05	14.80	0.00	2.276	14.22	0.52	11.6	88.4	0.0	-4.18	2.84	0.38	0.72	2.37	2034	306	6	0	0	0	0	logfile
✔	6MLU	9146	2021-11-01	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.17	0.0	0.06	17.85	0.01	2.190	34.21	2.78	15.2	84.8	0.0	-2.46	2.68	0.44	0.77	—	2516	306	2	0	0	0	0	logfile
✘	6YJ5	10816	2021-11-01	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2061	306	1	0	0	0	0	logfile
✔	7N9A	24253	2021-11-01	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.66	0.0	0.04	15.47	0.00	2.149	13.24	0.78	3.6	96.4	0.0	-0.80	0.59	0.73	0.69	2.31	2431	312	2	0	0	0	0	logfile
✔	7LXW	23577	2021-11-01	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.004	0.64	0.0	0.05	15.56	0.01	2.229	10.57	1.90	1.7	98.3	0.0	0.26	1.19	0.74	0.84	4.92	2524	317	5	0	5	0	0	logfile
✔	7M62	23687	2021-11-01	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.0	0.003	0.86	0.0	0.05	15.67	0.00	2.178	20.52	0.37	20.0	80.0	0.0	-5.12	2.80	0.56	0.64	2.59	2380	320	10	0	10	0	0	logfile
✔	6PEo	20328	2021-11-01	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.64	0.0	0.06	16.10	0.00	2.445	8.63	0.44	9.7	90.3	0.0	-2.51	1.64	0.41	0.82	4.69	2205	320	5	0	0	0	0	logfile
✔	7MJi	23874	2021-11-01	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.62	0.0	0.04	15.67	0.00	2.327	6.31	2.57	2.8	97.2	0.0	-0.04	1.44	0.58	0.86	4.53	2522	320	3	0	1	0	0	logfile
✔	6CoZ	7545	2021-11-01	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.5	0.003	0.85	0.0	0.04	5.38	0.00	2.347	3.54	0.00	13.8	86.2	0.0	-2.11	1.68	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	6VHA	21201	2021-11-01	2020-01-09	4.3	4.35	—	7.8	0.007	1.02	0.0	0.05	15.14	0.01	2.319	26.84	2.13	12.4	87.6	0.0	-4.78	0.55	0.54	—	4.1	0.004	0.80	0.0	0.05	13.30	0.00	2.320	15.22	0.00	11.1	88.9	0.0	-4.20	3.45	0.58	0.60	—	2439	321	3	0	0	0	0	logfile
✔	6TJo	10512	2021-11-01	2019-11-26	3.2	3.43	2.57	3.5	0.013	1.18	0.0	0.07	9.67	0.01	2.394	2.20	0.00	12.7	87.3	0.0	-4.63	0.36	0.76	4.64	3.5	0.005	0.80	0.0	0.05	13.25	0.00	2.326	9.01	0.71	9.5	90.5	0.0	-3.63	1.42	0.36	0.78	4.13	2439	321	3	0	0	0	0	logfile
✔	7AWA	11928	2021-11-01	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.51	0.0	0.04	15.04	0.00	2.162	6.96	0.00	4.0	96.0	0.0	-0.76	1.18	0.55	0.81	1.43	5310	328	1	0	0	0	2703	logfile
✔	6YV1	10940	2021-11-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	3.7	0.003	0.67	0.0	0.04	14.42	0.00	2.288	7.24	0.00	2.6	97.4	0.0	1.10	0.66	0.51	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	6L4S	0833	2021-11-01	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.007	0.82	0.0	0.06	15.25	0.00	2.244	12.64	0.88	14.2	85.8	0.0	-3.66	3.15	0.35	0.74	1.98	2268	330	6	0	0	0	0	logfile
✔	7LXX	23578	2021-11-01	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.005	0.71	0.0	0.05	14.55	0.00	2.130	10.01	3.16	4.5	95.5	0.0	-0.40	1.61	0.76	0.82	4.51	2740	352	5	0	4	0	0	logfile
✔	7LY0	23581	2021-11-01	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.17	0.0	0.08	9.71	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.006	0.76	0.0	0.05	15.65	0.00	2.162	9.21	3.57	2.1	97.9	0.0	0.54	1.63	0.70	0.77	4.06	2805	354	5	0	6	0	0	logfile
✔	6N37	9339	2021-11-01	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.004	0.82	0.0	0.04	18.22	0.00	2.251	23.31	1.60	8.8	91.2	0.0	-5.12	0.93	0.52	0.77	2.56	2580	360	10	0	0	0	0	logfile
✔	7RTV	24690	2021-11-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.91	0.00	2.178	16.12	0.65	3.0	97.0	0.0	2.90	1.77	0.41	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	6V5V	21054	2021-11-01	2019-12-04	3.8	4.01	—	3.9	0.003	0.51	0.0	0.04	13.58	0.00	2.212	6.07	0.00	4.6	95.4	0.0	-2.04	0.52	0.82	2.06	3.9	0.002	0.54	0.0	0.04	14.69	0.00	2.257	6.91	0.00	3.5	96.5	0.0	0.52	0.56	0.53	0.82	1.61	2979	369	1	1	0	0	0	logfile
✔	7DoU	30800	2021-11-01	2020-12-17	3.0	3.06	—	3.1	0.003	0.67	0.0	0.05	12.73	0.00	2.164	9.00	0.00	9.8	90.2	0.0	-1.42	0.47	0.82	2.63	3.1	0.005	0.77	0.0	0.05	18.15	0.00	2.183	10.22	3.77	9.3	90.7	0.0	-0.99	1.39	0.49	0.85	2.71	2841	372	3	0	0	0	0	logfile

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