Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TZ0	26201	2023-04-19	2022-02-15	4.17	3.79	—	4.4	0.003	0.62	0.0	0.04	12.38	0.01	2.265	10.65	0.00	7.9	92.1	0.0	-1.73	0.41	0.61	—	4.0	0.004	0.77	0.0	0.05	12.39	0.00	2.106	22.26	0.35	12.2	87.8	0.0	-2.19	1.41	0.44	0.64	—	2674	347	2	0	0	0	0	logfile
✔	7UL2	26589	2023-04-20	2022-04-03	2.4	2.59	2.47	2.6	0.008	1.02	0.0	0.06	12.80	0.01	2.306	6.83	0.84	1.5	98.5	0.0	1.60	0.71	0.84	4.40	2.6	0.003	0.56	0.0	0.04	14.23	0.00	2.265	2.21	1.26	0.3	99.7	0.0	2.55	1.31	0.65	0.84	2.92	2624	347	3	0	2	13	0	logfile
✘	7UL4	26591	2023-04-19	2022-04-03	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2524	351	3	0	1	4	0	logfile
✔	7LXX	23578	2023-04-19	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.19	0.0	0.06	10.12	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.004	0.68	0.0	0.04	14.31	0.00	2.133	8.88	4.21	4.2	95.8	0.0	-0.39	1.60	0.75	0.81	4.41	2740	352	5	0	4	0	0	logfile
✔	7LY0	23581	2023-04-19	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.19	0.0	0.08	9.79	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.005	0.71	0.0	0.05	15.89	0.00	2.125	8.84	2.86	2.7	97.3	0.0	0.06	1.63	0.69	0.76	4.26	2805	354	5	0	6	0	0	logfile
✔	7QEU	13941	2023-04-19	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.0	0.003	0.52	0.0	0.04	14.96	0.00	2.155	3.83	1.55	2.0	98.0	0.0	3.38	0.40	0.79	0.88	2.92	3002	359	6	0	6	7	0	logfile
✔	7YHo	33832	2023-04-20	2022-07-14	3.3	3.49	3.34	3.3	0.005	0.74	1.0	0.07	23.40	0.00	2.273	11.12	8.78	4.0	96.0	0.0	0.44	0.74	0.72	1.30	3.3	0.003	0.62	0.0	0.04	23.37	0.00	2.224	13.30	0.63	3.7	96.3	0.0	-0.15	0.62	0.75	0.74	1.86	3923	361	4	49	1	0	0	logfile
✔	7ZH4	14721	2023-04-19	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	7QES	13939	2023-04-19	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.170	4.71	1.22	3.4	96.6	0.0	2.50	1.24	0.78	0.87	2.88	3076	366	6	0	10	14	0	logfile
✔	7RTV	24690	2023-04-19	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	14.21	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.91	0.0	0.04	16.58	0.00	2.168	18.02	0.32	3.3	96.7	0.0	2.73	1.76	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	7QEo	13935	2023-04-19	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.64	0.0	0.04	15.50	0.00	2.182	6.20	0.91	3.1	96.9	0.0	2.77	0.47	0.78	0.88	2.74	3056	368	6	0	6	4	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7UL5	26592	2023-04-19	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.33	0.00	2.337	1.84	0.37	1.7	98.3	0.0	2.87	0.30	0.64	0.86	3.19	2773	371	2	0	0	0	0	logfile
✔	7YHP	33835	2023-04-20	2022-07-14	3.1	3.03	3.01	3.1	0.008	0.55	0.0	0.04	18.78	0.00	2.216	6.19	1.81	4.1	95.9	0.0	0.44	0.68	0.76	3.14	3.1	0.003	0.51	0.0	0.04	21.18	0.00	2.075	9.08	0.00	3.6	96.4	0.0	0.22	0.78	0.68	0.79	3.03	3815	374	4	38	1	0	0	logfile
✔	7V0X	26952	2023-04-19	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.53	0.0	0.04	19.08	0.00	2.176	7.23	4.38	4.9	95.1	0.0	1.77	0.47	0.60	0.88	3.17	2818	375	1	0	0	0	0	logfile
✔	7T32	25648	2023-04-20	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.68	0.0	0.04	16.41	0.00	2.232	8.43	1.06	4.3	95.4	0.3	2.45	0.95	0.41	0.76	0.65	2861	375	1	0	1	0	0	logfile
✔	8CTK	26993	2023-04-19	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.60	0.0	0.04	15.16	0.00	2.247	8.41	0.63	3.8	96.2	0.0	-0.33	0.85	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7S15	24794	2023-04-19	2021-09-01	3.8	4.41	—	4.2	0.007	0.90	0.0	0.05	17.81	0.01	2.174	12.66	0.00	12.0	88.0	0.0	-4.51	0.51	0.77	1.80	4.2	0.003	0.72	0.0	0.04	18.81	0.00	2.276	12.66	0.58	7.4	92.6	0.0	-1.02	0.67	0.49	0.76	0.81	3207	382	1	0	1	0	0	logfile
✔	8EQT	28545	2023-04-19	2022-10-09	3.4	3.89	3.34	3.7	0.006	0.89	0.0	0.05	10.95	0.00	2.213	11.78	0.00	2.1	97.9	0.0	0.61	0.62	0.82	3.25	3.7	0.003	0.62	0.0	0.04	16.50	0.00	2.193	12.25	0.87	2.7	97.3	0.0	1.18	0.82	0.65	0.86	3.03	3206	382	4	0	4	0	0	logfile
✘	7QEV	13942	2023-04-19	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3204	383	6	0	8	8	0	logfile

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