Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VV6	32139	2023-08-09	2021-11-04	3.3	3.47	—	3.5	0.010	1.38	0.0	0.07	19.04	0.01	2.291	4.89	10.37	5.2	94.8	0.0	-4.22	0.62	0.83	1.64	3.4	0.004	0.65	0.0	0.04	17.06	0.00	2.195	6.88	0.00	3.3	96.7	0.0	2.95	0.67	0.65	0.86	1.49	2227	271	1	0	2	0	0	logfile
✔	8iWM	35771	2023-08-09	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.002	0.65	0.0	0.04	15.22	0.00	2.254	8.78	1.05	2.2	97.8	0.0	0.48	0.58	0.59	0.77	2.24	1980	271	1	0	1	0	0	logfile
✔	7VQQ	32092	2023-08-09	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.006	0.80	0.0	0.04	12.91	0.00	2.234	2.21	0.91	5.6	94.4	0.0	-4.97	0.28	0.48	0.87	4.95	1968	273	3	0	0	0	0	logfile
✔	7M65	23689	2023-08-09	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.003	0.78	0.0	0.04	11.75	0.00	2.164	15.54	0.00	9.8	90.2	0.0	-5.71	4.56	0.51	0.70	—	2025	275	10	0	5	0	0	logfile
✔	6ZRQ	11382	2023-08-09	2020-07-14	3.9	4.06	—	4.2	0.014	1.45	0.0	0.05	12.35	0.00	2.597	20.13	0.00	5.0	95.0	0.0	-4.20	0.64	0.62	3.62	4.2	0.003	0.72	0.0	0.05	13.32	0.00	2.161	21.15	0.46	16.2	83.8	0.0	-5.88	2.14	0.70	0.77	2.54	3816	276	12	0	0	0	1776	logfile
✔	6VPS	21316	2023-08-09	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.003	0.51	0.0	0.03	20.10	0.00	2.351	3.30	1.31	6.9	93.1	0.0	-3.83	1.19	0.47	0.87	6.39	2736	279	9	0	0	0	0	logfile
✔	6GX5	0077	2023-08-09	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.76	0.0	0.05	17.31	0.00	2.207	9.16	1.65	5.8	94.2	0.0	-2.81	0.66	0.82	0.85	4.84	2133	282	3	0	0	0	0	logfile
✔	7JV2	22491	2023-08-09	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.004	0.72	0.0	0.04	14.90	0.00	2.223	14.03	0.44	5.5	94.5	0.0	-0.83	1.27	0.71	0.77	3.76	2151	282	3	0	0	0	0	logfile
✔	8EA0	27970	2023-08-09	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	6WQK	21871	2023-08-09	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.006	0.77	0.0	0.05	13.71	0.00	2.228	7.21	0.00	5.1	94.9	0.0	-4.42	0.47	0.46	0.85	5.27	2070	285	5	0	0	0	0	logfile
✔	7E0F	30931	2023-08-09	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.4	0.004	0.64	0.0	0.05	16.57	0.00	2.397	4.15	0.49	7.8	92.2	0.0	-3.39	1.23	0.39	0.80	3.92	2022	294	6	0	0	0	0	logfile
✔	8iWE	35765	2023-08-09	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.63	0.00	2.185	4.36	1.42	5.5	94.5	0.0	0.49	1.00	0.60	0.84	1.73	2236	296	1	0	1	0	0	logfile
✔	6ZRF	11380	2023-08-09	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	13.30	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.80	0.0	0.05	14.67	0.00	2.223	24.41	0.00	12.1	87.9	0.0	-5.90	0.52	0.69	0.82	3.16	2220	300	12	0	0	0	0	logfile
✔	7RHY	24471	2023-08-09	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.78	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.1	0.004	0.64	0.0	0.04	23.26	0.00	2.317	5.99	0.40	4.7	95.3	0.0	1.39	0.90	0.74	0.78	1.86	6350	301	2	49	0	0	2957	logfile
✔	8BF8	16016	2023-08-09	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	13.85	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	15.05	0.00	2.097	9.34	3.26	2.7	97.3	0.0	0.66	0.89	0.59	0.75	2.83	4686	302	2	111	0	0	0	logfile
✔	8oRF	17122	2023-08-09	2023-04-13	2.5	2.71	2.32	2.7	0.010	1.27	0.0	0.07	11.76	0.01	2.508	0.00	0.00	5.1	94.9	0.0	-2.82	0.31	0.74	5.59	2.7	0.004	0.61	0.0	0.05	17.12	0.00	2.097	5.38	1.52	4.0	96.0	0.0	-3.23	1.23	0.38	0.82	5.50	4653	303	3	0	0	0	2382	logfile
✔	7QV6	14168	2023-08-09	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.39	0.0	0.06	11.93	0.00	2.389	1.45	0.00	0.0	100.0	0.0	0.74	0.46	0.40	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	7C1D	30269	2023-08-09	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.63	0.0	0.05	14.86	0.00	2.265	16.18	2.08	14.6	85.4	0.0	-4.73	2.82	0.39	0.75	3.16	2034	306	6	0	0	0	0	logfile
✔	6YJ5	10816	2023-08-09	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7QKW	14055	2023-08-09	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile

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