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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8AVV | 15684 | 2023-07-04 | 2022-08-27 | 3.4 | 3.53 | 3.39 | 3.5 | 0.008 | 1.38 | 0.0 | 0.08 | 18.27 | 0.01 | 2.580 | 1.80 | 5.03 | 4.7 | 95.1 | 0.2 | -3.08 | 0.76 | 0.87 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7794 | 1010 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7EU3 | 31307 | 2023-07-18 | 2021-05-15 | 3.7 | 3.95 | — | 3.9 | 0.005 | 0.88 | 1.0 | 0.05 | 14.83 | 0.01 | 1.818 | 12.64 | 0.05 | 15.0 | 84.6 | 0.5 | -4.98 | 0.63 | 0.76 | 1.38 | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 16.09 | 0.00 | 2.090 | 10.95 | 0.42 | 12.4 | 87.5 | 0.1 | -2.34 | 0.62 | 0.63 | 0.76 | 0.96 | 40775 | 5338 | 28 | 0 | 66 | 0 | 0 | logfile |
✔ | 7YXY | 14369 | 2023-07-07 | 2022-02-16 | 3.1 | 3.25 | 3.02 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.93 | 0.00 | 2.219 | 10.79 | 0.00 | 4.9 | 95.0 | 0.1 | 0.42 | 0.64 | 0.78 | 1.95 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.70 | 0.00 | 2.180 | 10.72 | 0.46 | 5.2 | 94.8 | 0.1 | 0.75 | 0.51 | 0.64 | 0.81 | 1.83 | 14031 | 1739 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7B0N | 11969 | 2023-07-11 | 2020-11-20 | 3.7 | 3.22 | 3.70 | 3.2 | 0.018 | 1.20 | 0.0 | 0.45 | 14.97 | 0.01 | 0.019 | 3.79 | 0.07 | 5.5 | 94.4 | 0.1 | -2.92 | 0.59 | 0.74 | 2.70 | 3.2 | 0.005 | 0.86 | 0.0 | 0.13 | 16.23 | 0.00 | 1.907 | 9.08 | 0.17 | 5.4 | 94.6 | 0.0 | -0.26 | 2.50 | 0.60 | 0.75 | 2.36 | 129439 | 8092 | 62 | 0 | 38 | 0 | 64087 | logfile |
✔ | 6G2J | 4345 | 2023-07-07 | 2018-03-23 | 3.3 | 3.41 | 3.49 | 3.4 | 0.009 | 1.17 | 0.0 | 1.03 | 12.54 | 0.01 | 1.499 | 6.66 | 0.06 | 14.9 | 84.7 | 0.4 | -5.96 | 0.59 | 0.77 | 3.32 | 3.4 | 0.009 | 1.68 | 0.0 | 0.31 | 16.48 | 0.01 | 1.967 | 15.56 | 0.48 | 11.4 | 88.5 | 0.1 | -2.07 | 0.84 | 0.61 | 0.83 | 2.29 | 66811 | 8164 | 60 | 0 | 34 | 0 | 0 | logfile |
✔ | 8B0G | 15780 | 2023-07-13 | 2022-09-07 | 3.3 | 3.50 | 3.22 | 3.1 | 0.009 | 0.80 | 0.0 | 0.07 | 14.55 | 0.01 | 1.687 | 5.69 | 0.34 | 5.2 | 94.8 | 0.0 | -0.94 | 0.84 | 0.81 | 2.69 | 3.1 | 0.006 | 0.64 | 0.0 | 0.05 | 14.55 | 0.00 | 1.916 | 7.41 | 0.20 | 5.5 | 94.5 | 0.0 | -0.45 | 0.86 | 0.86 | 0.86 | 2.61 | 79270 | 5113 | 15 | 0 | 10 | 0 | 38789 | logfile |
✘ | 6Z43 | 11068 | 2023-07-12 | 2020-05-22 | 3.3 | 3.43 | — | 3.4 | 0.006 | 0.61 | 0.0 | 0.05 | 10.89 | 0.00 | 2.094 | 4.31 | 0.68 | 3.5 | 96.5 | 0.0 | -0.78 | 0.78 | 0.84 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26725 | 3351 | 29 | 0 | 66 | 0 | 0 | logfile |
✔ | 6GJ3 | 0010 | 2023-07-08 | 2018-05-15 | 4.3 | 4.02 | — | 3.9 | 0.008 | 1.19 | 0.0 | 0.06 | 10.34 | 0.01 | 2.248 | 5.14 | 0.37 | 13.5 | 86.2 | 0.3 | -4.76 | 0.71 | 0.78 | — | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 12.36 | 0.01 | 2.209 | 10.28 | 0.00 | 10.8 | 89.2 | 0.0 | -1.74 | 0.76 | 0.71 | 0.78 | — | 17405 | 2194 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9J | 13871 | 2023-07-18 | 2021-11-12 | 4.0 | 4.41 | — | 4.2 | 0.005 | 0.57 | 0.0 | 0.04 | 9.31 | 0.00 | 2.081 | 6.34 | 0.64 | 3.6 | 96.4 | 0.0 | 0.36 | 0.83 | 0.80 | — | 4.2 | 0.003 | 0.63 | 0.0 | 0.04 | 13.10 | 0.00 | 2.130 | 11.89 | 0.12 | 3.4 | 96.6 | 0.0 | 0.55 | 1.09 | 0.83 | 0.80 | — | 30290 | 3794 | 25 | 0 | 57 | 0 | 0 | logfile |
✔ | 8DGA | 27420 | 2023-07-07 | 2022-06-23 | 3.73 | 4.05 | 3.82 | 3.9 | 0.007 | 1.17 | 0.0 | 0.06 | 13.53 | 0.01 | 2.210 | 8.33 | 0.12 | 7.0 | 92.7 | 0.3 | -2.35 | 0.70 | 0.60 | 0.89 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 15.29 | 0.00 | 2.120 | 16.79 | 0.56 | 6.3 | 93.4 | 0.3 | 0.07 | 0.57 | 0.70 | 0.60 | 0.87 | 15473 | 1811 | 5 | 41 | 1 | 0 | 0 | logfile |
✔ | 7PXF | 13701 | 2023-07-13 | 2021-10-08 | 2.68 | 2.75 | 2.73 | 2.9 | 0.002 | 0.45 | 0.0 | 0.04 | 12.99 | 0.00 | 2.188 | 5.55 | 0.65 | 2.1 | 97.9 | 0.0 | -0.25 | 0.66 | 0.85 | 3.21 | 2.9 | 0.003 | 0.55 | 0.0 | 0.04 | 15.63 | 0.00 | 2.135 | 7.10 | 2.23 | 2.1 | 97.9 | 0.0 | 0.50 | 0.51 | 0.66 | 0.88 | 3.62 | 28099 | 3540 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 7oZN | 13129 | 2023-07-04 | 2021-06-28 | 3.5 | 3.79 | 3.49 | 3.7 | 0.002 | 0.42 | 0.0 | 0.04 | 14.10 | 0.00 | 2.073 | 4.61 | 0.00 | 2.0 | 98.0 | 0.0 | 1.13 | 0.77 | 0.72 | 1.17 | 3.7 | 0.004 | 0.69 | 0.0 | 0.05 | 16.69 | 0.00 | 2.069 | 15.15 | 0.51 | 3.5 | 96.5 | 0.0 | -0.01 | 0.84 | 0.80 | 0.78 | 1.48 | 54330 | 6774 | 32 | 0 | 10 | 0 | 0 | logfile |
✔ | 7oDT | 12847 | 2023-07-04 | 2021-04-30 | 3.1 | 3.31 | — | 3.1 | 0.003 | 0.41 | 0.0 | 0.03 | 11.01 | 0.01 | 1.988 | 5.28 | 0.53 | 1.2 | 98.8 | 0.0 | 1.05 | 0.77 | 0.79 | 2.84 | 3.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.67 | 0.00 | 1.891 | 10.64 | 0.27 | 2.6 | 97.4 | 0.0 | 0.69 | 0.71 | 0.78 | 0.83 | 2.53 | 110473 | 9585 | 71 | 1526 | 110 | 0 | 0 | logfile |
✔ | 7Y0D | 33540 | 2023-07-10 | 2022-06-04 | 3.1 | 3.61 | 3.03 | 3.1 | 0.003 | 0.61 | 0.0 | 0.04 | 13.79 | 0.00 | 2.158 | 13.54 | 0.00 | 5.1 | 94.9 | 0.0 | 0.77 | 0.84 | 0.74 | 0.91 | 3.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.33 | 0.00 | 2.140 | 14.10 | 0.26 | 4.5 | 95.5 | 0.0 | 1.04 | 1.13 | 0.85 | 0.76 | 0.88 | 21224 | 2768 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EA4 | 27972 | 2023-07-05 | 2022-08-27 | 3.0 | 4.51 | 3.88 | 3.9 | 0.013 | 1.63 | 12.0 | 0.08 | 16.78 | 0.02 | 1.131 | 13.81 | 0.21 | 2.3 | 97.7 | 0.0 | -1.13 | 0.76 | 0.60 | 1.23 | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 18.63 | 0.00 | 1.883 | 12.88 | 1.52 | 2.8 | 97.2 | 0.0 | 1.53 | 1.45 | 0.89 | 0.83 | 1.05 | 58049 | 5875 | 46 | 495 | 28 | 0 | 0 | logfile |
✘ | 6Y5R | 10703 | 2023-07-07 | 2020-02-25 | 3.76 | 3.87 | 3.73 | 3.8 | 0.004 | 0.64 | 0.0 | 0.04 | 11.47 | 0.00 | 2.147 | 7.90 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13592 | 1758 | 6 | 0 | 8 | 0 | 0 | logfile |
✔ | 7oBR | 12801 | 2023-07-21 | 2021-04-23 | 2.8 | 2.88 | — | 2.9 | 0.002 | 0.49 | 1.0 | 0.03 | 15.19 | 0.00 | 1.835 | 8.03 | 2.55 | 4.6 | 95.3 | 0.0 | 0.58 | 0.61 | 0.80 | 2.85 | 2.8 | 0.004 | 0.68 | 0.0 | 0.04 | 17.37 | 0.01 | 1.834 | 9.58 | 3.96 | 5.9 | 94.0 | 0.1 | -0.12 | 1.21 | 0.65 | 0.86 | 3.11 | 146701 | 7484 | 60 | 4019 | 102 | 0 | 0 | logfile |
✘ | 7QWQ | 14191 | 2023-07-18 | 2022-01-25 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 143809 | 7312 | 59 | 3936 | 158 | 0 | 0 | logfile |
✔ | 7TFA | 25867 | 2023-07-18 | 2022-01-06 | 2.07 | 2.20 | — | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.35 | 0.00 | 2.014 | 5.94 | 2.16 | 3.6 | 96.4 | 0.0 | 0.31 | 0.47 | 0.65 | 4.55 | 2.2 | 0.003 | 0.54 | 0.0 | 0.04 | 17.24 | 0.00 | 1.892 | 19.06 | 2.55 | 4.4 | 95.6 | 0.0 | 0.38 | 0.59 | 0.70 | 0.82 | 5.45 | 42636 | 5424 | 36 | 0 | 24 | 0 | 120 | logfile |
✔ | 7QSD | 14127 | 2023-07-08 | 2022-01-13 | 3.1 | 2.99 | 3.12 | 3.0 | 0.008 | 0.79 | 0.0 | 0.84 | 15.69 | 0.00 | 1.431 | 5.79 | 0.03 | 5.7 | 94.2 | 0.1 | -1.37 | 0.66 | 0.85 | 4.09 | 3.0 | 0.007 | 1.34 | 0.0 | 0.25 | 16.67 | 0.00 | 1.941 | 7.42 | 0.24 | 3.1 | 96.9 | 0.0 | 0.85 | 0.46 | 0.66 | 0.86 | 3.25 | 67259 | 8207 | 69 | 0 | 40 | 0 | 0 | logfile |