Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8AVV	15684	2023-07-04	2022-08-27	3.4	3.53	3.39	3.5	0.008	1.38	0.0	0.08	18.27	0.01	2.580	1.80	5.03	4.7	95.1	0.2	-3.08	0.76	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7794	1010	4	0	2	0	0	logfile
✔	7EU3	31307	2023-07-18	2021-05-15	3.7	3.95	—	3.9	0.005	0.88	1.0	0.05	14.83	0.01	1.818	12.64	0.05	15.0	84.6	0.5	-4.98	0.63	0.76	1.38	3.9	0.003	0.75	0.0	0.04	16.09	0.00	2.090	10.95	0.42	12.4	87.5	0.1	-2.34	0.62	0.63	0.76	0.96	40775	5338	28	0	66	0	0	logfile
✔	7YXY	14369	2023-07-07	2022-02-16	3.1	3.25	3.02	3.1	0.003	0.59	0.0	0.04	13.93	0.00	2.219	10.79	0.00	4.9	95.0	0.1	0.42	0.64	0.78	1.95	3.1	0.003	0.64	0.0	0.04	15.70	0.00	2.180	10.72	0.46	5.2	94.8	0.1	0.75	0.51	0.64	0.81	1.83	14031	1739	1	0	0	0	0	logfile
✔	7B0N	11969	2023-07-11	2020-11-20	3.7	3.22	3.70	3.2	0.018	1.20	0.0	0.45	14.97	0.01	0.019	3.79	0.07	5.5	94.4	0.1	-2.92	0.59	0.74	2.70	3.2	0.005	0.86	0.0	0.13	16.23	0.00	1.907	9.08	0.17	5.4	94.6	0.0	-0.26	2.50	0.60	0.75	2.36	129439	8092	62	0	38	0	64087	logfile
✔	6G2J	4345	2023-07-07	2018-03-23	3.3	3.41	3.49	3.4	0.009	1.17	0.0	1.03	12.54	0.01	1.499	6.66	0.06	14.9	84.7	0.4	-5.96	0.59	0.77	3.32	3.4	0.009	1.68	0.0	0.31	16.48	0.01	1.967	15.56	0.48	11.4	88.5	0.1	-2.07	0.84	0.61	0.83	2.29	66811	8164	60	0	34	0	0	logfile
✔	8B0G	15780	2023-07-13	2022-09-07	3.3	3.50	3.22	3.1	0.009	0.80	0.0	0.07	14.55	0.01	1.687	5.69	0.34	5.2	94.8	0.0	-0.94	0.84	0.81	2.69	3.1	0.006	0.64	0.0	0.05	14.55	0.00	1.916	7.41	0.20	5.5	94.5	0.0	-0.45	0.86	0.86	0.86	2.61	79270	5113	15	0	10	0	38789	logfile
✘	6Z43	11068	2023-07-12	2020-05-22	3.3	3.43	—	3.4	0.006	0.61	0.0	0.05	10.89	0.00	2.094	4.31	0.68	3.5	96.5	0.0	-0.78	0.78	0.84	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26725	3351	29	0	66	0	0	logfile
✔	6GJ3	0010	2023-07-08	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.73	0.0	0.04	12.36	0.01	2.209	10.28	0.00	10.8	89.2	0.0	-1.74	0.76	0.71	0.78	—	17405	2194	7	0	0	0	0	logfile
✔	7Q9J	13871	2023-07-18	2021-11-12	4.0	4.41	—	4.2	0.005	0.57	0.0	0.04	9.31	0.00	2.081	6.34	0.64	3.6	96.4	0.0	0.36	0.83	0.80	—	4.2	0.003	0.63	0.0	0.04	13.10	0.00	2.130	11.89	0.12	3.4	96.6	0.0	0.55	1.09	0.83	0.80	—	30290	3794	25	0	57	0	0	logfile
✔	8DGA	27420	2023-07-07	2022-06-23	3.73	4.05	3.82	3.9	0.007	1.17	0.0	0.06	13.53	0.01	2.210	8.33	0.12	7.0	92.7	0.3	-2.35	0.70	0.60	0.89	3.8	0.003	0.68	0.0	0.04	15.29	0.00	2.120	16.79	0.56	6.3	93.4	0.3	0.07	0.57	0.70	0.60	0.87	15473	1811	5	41	1	0	0	logfile
✔	7PXF	13701	2023-07-13	2021-10-08	2.68	2.75	2.73	2.9	0.002	0.45	0.0	0.04	12.99	0.00	2.188	5.55	0.65	2.1	97.9	0.0	-0.25	0.66	0.85	3.21	2.9	0.003	0.55	0.0	0.04	15.63	0.00	2.135	7.10	2.23	2.1	97.9	0.0	0.50	0.51	0.66	0.88	3.62	28099	3540	8	0	7	0	0	logfile
✔	7oZN	13129	2023-07-04	2021-06-28	3.5	3.79	3.49	3.7	0.002	0.42	0.0	0.04	14.10	0.00	2.073	4.61	0.00	2.0	98.0	0.0	1.13	0.77	0.72	1.17	3.7	0.004	0.69	0.0	0.05	16.69	0.00	2.069	15.15	0.51	3.5	96.5	0.0	-0.01	0.84	0.80	0.78	1.48	54330	6774	32	0	10	0	0	logfile
✔	7oDT	12847	2023-07-04	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	11.01	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.003	0.58	0.0	0.04	14.67	0.00	1.891	10.64	0.27	2.6	97.4	0.0	0.69	0.71	0.78	0.83	2.53	110473	9585	71	1526	110	0	0	logfile
✔	7Y0D	33540	2023-07-10	2022-06-04	3.1	3.61	3.03	3.1	0.003	0.61	0.0	0.04	13.79	0.00	2.158	13.54	0.00	5.1	94.9	0.0	0.77	0.84	0.74	0.91	3.1	0.003	0.64	0.0	0.04	15.33	0.00	2.140	14.10	0.26	4.5	95.5	0.0	1.04	1.13	0.85	0.76	0.88	21224	2768	8	0	0	0	0	logfile
✔	8EA4	27972	2023-07-05	2022-08-27	3.0	4.51	3.88	3.9	0.013	1.63	12.0	0.08	16.78	0.02	1.131	13.81	0.21	2.3	97.7	0.0	-1.13	0.76	0.60	1.23	3.9	0.003	0.69	0.0	0.04	18.63	0.00	1.883	12.88	1.52	2.8	97.2	0.0	1.53	1.45	0.89	0.83	1.05	58049	5875	46	495	28	0	0	logfile
✘	6Y5R	10703	2023-07-07	2020-02-25	3.76	3.87	3.73	3.8	0.004	0.64	0.0	0.04	11.47	0.00	2.147	7.90	0.07	4.4	95.6	0.0	-2.26	0.68	0.85	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13592	1758	6	0	8	0	0	logfile
✔	7oBR	12801	2023-07-21	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	15.19	0.00	1.835	8.03	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.004	0.68	0.0	0.04	17.37	0.01	1.834	9.58	3.96	5.9	94.0	0.1	-0.12	1.21	0.65	0.86	3.11	146701	7484	60	4019	102	0	0	logfile
✘	7QWQ	14191	2023-07-18	2022-01-25	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	143809	7312	59	3936	158	0	0	logfile
✔	7TFA	25867	2023-07-18	2022-01-06	2.07	2.20	—	2.2	0.003	0.57	0.0	0.04	17.35	0.00	2.014	5.94	2.16	3.6	96.4	0.0	0.31	0.47	0.65	4.55	2.2	0.003	0.54	0.0	0.04	17.24	0.00	1.892	19.06	2.55	4.4	95.6	0.0	0.38	0.59	0.70	0.82	5.45	42636	5424	36	0	24	0	120	logfile
✔	7QSD	14127	2023-07-08	2022-01-13	3.1	2.99	3.12	3.0	0.008	0.79	0.0	0.84	15.69	0.00	1.431	5.79	0.03	5.7	94.2	0.1	-1.37	0.66	0.85	4.09	3.0	0.007	1.34	0.0	0.25	16.67	0.00	1.941	7.42	0.24	3.1	96.9	0.0	0.85	0.46	0.66	0.86	3.25	67259	8207	69	0	40	0	0	logfile

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