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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3LoS | 5137 | 2023-08-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7MYo | 24082 | 2023-08-11 | 2021-05-21 | 2.92 | 3.27 | 2.93 | 3.3 | 0.005 | 0.89 | 0.0 | 0.05 | 15.08 | 0.01 | 2.225 | 9.92 | 0.59 | 5.9 | 94.1 | 0.0 | -1.97 | 0.57 | 0.66 | 0.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10634 | 1278 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6CAA | 7441 | 2023-08-10 | 2018-01-29 | 3.9 | 3.97 | — | 3.9 | 0.009 | 1.33 | 0.0 | 0.07 | 12.41 | 0.01 | 1.886 | 9.42 | 0.00 | 13.0 | 87.0 | 0.0 | -6.23 | 0.64 | 0.79 | 1.91 | 3.9 | 0.003 | 0.85 | 0.0 | 0.04 | 15.65 | 0.00 | 2.145 | 12.63 | 0.25 | 11.7 | 88.3 | 0.0 | -1.27 | 2.14 | 0.66 | 0.79 | 1.54 | 7508 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6NT3 | 0500 | 2023-08-12 | 2019-01-28 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10934 | 1278 | 5 | 0 | 20 | 0 | 0 | logfile |
✔ | 7YCH | 33739 | 2023-08-10 | 2022-07-01 | 3.09 | 4.46 | 3.30 | 3.5 | 0.002 | 0.48 | 0.0 | 0.02 | 14.59 | 0.00 | 1.420 | 15.91 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.92 | 0.84 | — | 3.6 | 0.007 | 0.67 | 0.0 | 0.04 | 15.78 | 0.00 | 1.792 | 32.28 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.47 | 0.94 | 0.88 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✔ | 8B0o | 15790 | 2023-08-10 | 2022-09-07 | 3.02 | 3.35 | 3.12 | 3.3 | 0.009 | 0.70 | 0.0 | 0.04 | 11.13 | 0.02 | 2.255 | 6.96 | 0.00 | 6.0 | 94.0 | 0.0 | -0.78 | 0.58 | 0.84 | 4.68 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 14.81 | 0.00 | 2.214 | 7.97 | 0.00 | 6.3 | 93.7 | 0.0 | -0.37 | 0.90 | 0.56 | 0.85 | 3.89 | 3995 | 506 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 8HD6 | 34670 | 2023-08-11 | 2022-11-03 | 3.73 | 4.52 | 3.73 | 3.2 | 0.002 | 0.54 | 0.0 | 0.02 | 14.51 | 0.00 | 1.969 | 2.97 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.78 | — | 3.3 | 0.008 | 0.86 | 0.0 | 0.05 | 19.11 | 0.01 | 1.720 | 28.98 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.31 | 0.91 | 0.82 | — | 8980 | 0 | 1 | 419 | 25 | 0 | 0 | logfile |
✔ | 7JLQ | 22377 | 2023-08-12 | 2020-07-30 | 4.0 | 4.06 | 3.84 | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 14.27 | 0.01 | 2.151 | 12.46 | 0.71 | 3.6 | 96.4 | 0.0 | -1.82 | 0.54 | 0.65 | — | 4.0 | 0.004 | 0.81 | 0.0 | 0.04 | 16.57 | 0.00 | 2.112 | 14.67 | 0.39 | 3.6 | 96.4 | 0.0 | -0.07 | 0.94 | 0.57 | 0.67 | — | 11700 | 1422 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LTH | 0968 | 2023-08-13 | 2020-01-22 | 3.0 | 3.24 | — | 3.1 | 0.006 | 0.72 | 1.0 | 0.05 | 15.07 | 0.01 | 2.174 | 12.03 | 0.12 | 4.6 | 95.4 | 0.0 | -3.45 | 0.80 | 0.83 | 2.97 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 17.32 | 0.00 | 2.070 | 11.16 | 2.44 | 3.3 | 96.7 | 0.0 | 1.29 | 1.25 | 0.81 | 0.85 | 2.67 | 14970 | 1845 | 9 | 0 | 1 | 0 | 0 | logfile |
✔ | 8FYB | 29563 | 2023-08-13 | 2023-01-25 | 3.1 | 3.33 | 3.15 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 20.78 | 0.00 | 2.211 | 12.15 | 0.09 | 3.6 | 96.4 | 0.0 | 0.63 | 0.71 | 0.78 | 2.70 | 3.3 | 0.003 | 0.57 | 0.0 | 0.04 | 22.34 | 0.00 | 2.194 | 12.42 | 0.18 | 3.6 | 96.4 | 0.0 | 0.91 | 1.69 | 0.70 | 0.79 | 2.32 | 13486 | 1359 | 10 | 136 | 0 | 0 | 0 | logfile |
✔ | 6oFF | 20044 | 2023-08-12 | 2019-03-29 | 3.2 | 3.32 | — | 3.3 | 0.009 | 0.83 | 0.0 | 0.04 | 10.88 | 0.01 | 2.147 | 4.73 | 0.00 | 3.9 | 96.1 | 0.0 | -5.21 | 0.59 | 0.85 | 4.52 | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 15.58 | 0.00 | 2.230 | 6.89 | 0.25 | 3.8 | 96.2 | 0.0 | 4.04 | 1.22 | 0.62 | 0.88 | 3.84 | 11016 | 1404 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FK0 | 29247 | 2023-08-12 | 2022-12-20 | 4.0 | 4.01 | 3.66 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 11.08 | 0.00 | 2.069 | 9.71 | 0.14 | 2.6 | 97.4 | 0.0 | 0.90 | 0.47 | 0.82 | — | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 13.29 | 0.00 | 2.075 | 8.87 | 0.14 | 2.9 | 97.1 | 0.0 | 0.83 | 1.17 | 0.47 | 0.82 | — | 12628 | 1848 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LNi | 0931 | 2023-08-09 | 2019-12-30 | 2.702 | 2.94 | — | 2.9 | 0.004 | 0.55 | 0.0 | 0.04 | 14.81 | 0.00 | 2.200 | 10.98 | 0.00 | 12.6 | 87.4 | 0.0 | -6.05 | 0.48 | 0.82 | 5.95 | 2.9 | 0.003 | 0.67 | 0.0 | 0.05 | 19.43 | 0.00 | 2.260 | 10.36 | 1.93 | 11.6 | 88.4 | 0.0 | -3.97 | 1.54 | 0.53 | 0.87 | 5.22 | 4920 | 600 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FYC | 29564 | 2023-08-13 | 2023-01-25 | 4.1 | 4.43 | 4.15 | 4.1 | 0.004 | 0.68 | 2.0 | 0.05 | 20.58 | 0.00 | 2.196 | 18.87 | 0.25 | 3.2 | 96.7 | 0.1 | -0.60 | 0.82 | 0.74 | — | 4.1 | 0.004 | 0.69 | 0.0 | 0.04 | 21.64 | 0.00 | 2.130 | 24.26 | 0.00 | 3.8 | 96.2 | 0.0 | -0.75 | 1.29 | 0.83 | 0.75 | — | 14575 | 1475 | 11 | 145 | 0 | 0 | 0 | logfile |
✔ | 6R91 | 4765 | 2023-08-25 | 2019-04-02 | 4.1 | 5.15 | — | 5.0 | 0.006 | 1.01 | 0.0 | 0.05 | 23.74 | 0.01 | 2.021 | 3.55 | 0.65 | 4.6 | 95.0 | 0.5 | -0.83 | 0.64 | 0.52 | — | 5.0 | 0.003 | 0.67 | 0.0 | 0.04 | 23.98 | 0.00 | 1.835 | 13.74 | 0.00 | 5.5 | 94.4 | 0.1 | -1.38 | 1.01 | 0.66 | 0.55 | — | 40540 | 1969 | 12 | 290 | 0 | 0 | 19063 | logfile |
✔ | 8B0K | 15786 | 2023-08-10 | 2022-09-07 | 3.0 | 3.23 | 3.08 | 3.2 | 0.002 | 0.52 | 0.0 | 0.04 | 9.63 | 0.00 | 2.276 | 7.40 | 0.50 | 3.1 | 96.9 | 0.0 | 0.56 | 0.57 | 0.83 | 5.07 | 3.2 | 0.003 | 0.60 | 0.0 | 0.04 | 13.64 | 0.00 | 2.240 | 7.92 | 2.76 | 3.5 | 96.5 | 0.0 | 0.93 | 0.88 | 0.58 | 0.85 | 4.37 | 3830 | 492 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DVR | 27743 | 2023-08-09 | 2022-07-29 | 3.3 | 3.38 | 3.19 | 3.4 | 0.002 | 0.46 | 0.0 | 0.04 | 13.62 | 0.00 | 2.267 | 8.74 | 1.40 | 4.5 | 95.5 | 0.0 | -2.25 | 0.67 | 0.75 | 1.81 | 3.4 | 0.003 | 0.59 | 0.0 | 0.04 | 15.74 | 0.00 | 2.266 | 10.10 | 0.35 | 6.1 | 93.9 | 0.0 | 0.14 | 0.57 | 0.71 | 0.82 | 2.11 | 5601 | 635 | 4 | 21 | 2 | 0 | 0 | logfile |
✘ | 7PD3 | 13329 | 2023-08-09 | 2021-08-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108076 | 9276 | 76 | 1522 | 125 | 0 | 0 | logfile |
✔ | 6HE4 | 0209 | 2023-08-12 | 2018-08-20 | 4.85 | 4.88 | — | 4.8 | 0.036 | 3.65 | 111.0 | 0.21 | 18.70 | 0.03 | 1.953 | 1.83 | 3.66 | 6.4 | 89.5 | 4.1 | -2.84 | 0.55 | 0.56 | — | 4.8 | 0.005 | 1.03 | 0.0 | 0.05 | 14.57 | 0.01 | 1.807 | 30.94 | 0.00 | 8.2 | 91.1 | 0.7 | -1.51 | 2.38 | 0.59 | 0.77 | — | 12684 | 1602 | 11 | 0 | 10 | 0 | 0 | logfile |
✔ | 7ARL | 11886 | 2023-08-11 | 2020-10-25 | 3.2 | 3.44 | — | 3.5 | 0.003 | 0.73 | 0.0 | 0.05 | 13.09 | 0.00 | 2.378 | 3.27 | 0.00 | 4.6 | 95.4 | 0.0 | -5.83 | 0.62 | 0.73 | 0.86 | 3.4 | 0.003 | 0.71 | 0.0 | 0.04 | 15.72 | 0.00 | 2.027 | 8.28 | 0.31 | 4.7 | 95.3 | 0.0 | -1.16 | 1.33 | 0.66 | 0.81 | 1.65 | 9467 | 1256 | 9 | 0 | 6 | 0 | 0 | logfile |