Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3LoS	5137	2023-08-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✘	7MYo	24082	2023-08-11	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.08	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10634	1278	2	0	1	0	0	logfile
✔	6CAA	7441	2023-08-10	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.85	0.0	0.04	15.65	0.00	2.145	12.63	0.25	11.7	88.3	0.0	-1.27	2.14	0.66	0.79	1.54	7508	954	2	0	0	0	0	logfile
✘	6NT3	0500	2023-08-12	2019-01-28	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10934	1278	5	0	20	0	0	logfile
✔	7YCH	33739	2023-08-10	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	14.59	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.67	0.0	0.04	15.78	0.00	1.792	32.28	0.00	0.0	0.0	0.0	—	1.47	0.94	0.88	—	8661	0	2	404	4	0	0	logfile
✔	8B0o	15790	2023-08-10	2022-09-07	3.02	3.35	3.12	3.3	0.009	0.70	0.0	0.04	11.13	0.02	2.255	6.96	0.00	6.0	94.0	0.0	-0.78	0.58	0.84	4.68	3.3	0.003	0.57	0.0	0.04	14.81	0.00	2.214	7.97	0.00	6.3	93.7	0.0	-0.37	0.90	0.56	0.85	3.89	3995	506	1	0	1	0	0	logfile
✔	8HD6	34670	2023-08-11	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	14.51	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.008	0.86	0.0	0.05	19.11	0.01	1.720	28.98	0.00	0.0	0.0	0.0	—	2.31	0.91	0.82	—	8980	0	1	419	25	0	0	logfile
✔	7JLQ	22377	2023-08-12	2020-07-30	4.0	4.06	3.84	4.0	0.007	0.99	0.0	0.05	14.27	0.01	2.151	12.46	0.71	3.6	96.4	0.0	-1.82	0.54	0.65	—	4.0	0.004	0.81	0.0	0.04	16.57	0.00	2.112	14.67	0.39	3.6	96.4	0.0	-0.07	0.94	0.57	0.67	—	11700	1422	3	0	0	0	0	logfile
✔	6LTH	0968	2023-08-13	2020-01-22	3.0	3.24	—	3.1	0.006	0.72	1.0	0.05	15.07	0.01	2.174	12.03	0.12	4.6	95.4	0.0	-3.45	0.80	0.83	2.97	3.2	0.004	0.70	0.0	0.04	17.32	0.00	2.070	11.16	2.44	3.3	96.7	0.0	1.29	1.25	0.81	0.85	2.67	14970	1845	9	0	1	0	0	logfile
✔	8FYB	29563	2023-08-13	2023-01-25	3.1	3.33	3.15	3.3	0.004	0.60	0.0	0.04	20.78	0.00	2.211	12.15	0.09	3.6	96.4	0.0	0.63	0.71	0.78	2.70	3.3	0.003	0.57	0.0	0.04	22.34	0.00	2.194	12.42	0.18	3.6	96.4	0.0	0.91	1.69	0.70	0.79	2.32	13486	1359	10	136	0	0	0	logfile
✔	6oFF	20044	2023-08-12	2019-03-29	3.2	3.32	—	3.3	0.009	0.83	0.0	0.04	10.88	0.01	2.147	4.73	0.00	3.9	96.1	0.0	-5.21	0.59	0.85	4.52	3.3	0.002	0.53	0.0	0.03	15.58	0.00	2.230	6.89	0.25	3.8	96.2	0.0	4.04	1.22	0.62	0.88	3.84	11016	1404	18	0	0	0	0	logfile
✔	8FK0	29247	2023-08-12	2022-12-20	4.0	4.01	3.66	3.9	0.003	0.56	0.0	0.04	11.08	0.00	2.069	9.71	0.14	2.6	97.4	0.0	0.90	0.47	0.82	—	3.9	0.002	0.55	0.0	0.04	13.29	0.00	2.075	8.87	0.14	2.9	97.1	0.0	0.83	1.17	0.47	0.82	—	12628	1848	14	0	0	0	0	logfile
✔	6LNi	0931	2023-08-09	2019-12-30	2.702	2.94	—	2.9	0.004	0.55	0.0	0.04	14.81	0.00	2.200	10.98	0.00	12.6	87.4	0.0	-6.05	0.48	0.82	5.95	2.9	0.003	0.67	0.0	0.05	19.43	0.00	2.260	10.36	1.93	11.6	88.4	0.0	-3.97	1.54	0.53	0.87	5.22	4920	600	10	0	0	0	0	logfile
✔	8FYC	29564	2023-08-13	2023-01-25	4.1	4.43	4.15	4.1	0.004	0.68	2.0	0.05	20.58	0.00	2.196	18.87	0.25	3.2	96.7	0.1	-0.60	0.82	0.74	—	4.1	0.004	0.69	0.0	0.04	21.64	0.00	2.130	24.26	0.00	3.8	96.2	0.0	-0.75	1.29	0.83	0.75	—	14575	1475	11	145	0	0	0	logfile
✔	6R91	4765	2023-08-25	2019-04-02	4.1	5.15	—	5.0	0.006	1.01	0.0	0.05	23.74	0.01	2.021	3.55	0.65	4.6	95.0	0.5	-0.83	0.64	0.52	—	5.0	0.003	0.67	0.0	0.04	23.98	0.00	1.835	13.74	0.00	5.5	94.4	0.1	-1.38	1.01	0.66	0.55	—	40540	1969	12	290	0	0	19063	logfile
✔	8B0K	15786	2023-08-10	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.60	0.0	0.04	13.64	0.00	2.240	7.92	2.76	3.5	96.5	0.0	0.93	0.88	0.58	0.85	4.37	3830	492	1	0	0	0	0	logfile
✔	8DVR	27743	2023-08-09	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	13.62	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.59	0.0	0.04	15.74	0.00	2.266	10.10	0.35	6.1	93.9	0.0	0.14	0.57	0.71	0.82	2.11	5601	635	4	21	2	0	0	logfile
✘	7PD3	13329	2023-08-09	2021-08-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108076	9276	76	1522	125	0	0	logfile
✔	6HE4	0209	2023-08-12	2018-08-20	4.85	4.88	—	4.8	0.036	3.65	111.0	0.21	18.70	0.03	1.953	1.83	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	4.8	0.005	1.03	0.0	0.05	14.57	0.01	1.807	30.94	0.00	8.2	91.1	0.7	-1.51	2.38	0.59	0.77	—	12684	1602	11	0	10	0	0	logfile
✔	7ARL	11886	2023-08-11	2020-10-25	3.2	3.44	—	3.5	0.003	0.73	0.0	0.05	13.09	0.00	2.378	3.27	0.00	4.6	95.4	0.0	-5.83	0.62	0.73	0.86	3.4	0.003	0.71	0.0	0.04	15.72	0.00	2.027	8.28	0.31	4.7	95.3	0.0	-1.16	1.33	0.66	0.81	1.65	9467	1256	9	0	6	0	0	logfile

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