Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6MZV	9308	2022-05-16	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.32	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32833	4523	42	0	0	0	0	logfile
✔	5YFP	6827	2022-05-16	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.12	0.0	0.04	10.78	0.00	2.024	26.41	0.10	17.3	82.4	0.3	-2.42	3.44	0.91	0.74	—	33096	5982	8	0	0	0	0	logfile
✘	6RKV	4912	2022-05-13	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	12.80	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	6SL1	10234	2022-05-14	2019-08-16	3.6	3.62	—	3.5	0.011	0.83	0.0	0.05	14.89	0.01	2.016	13.61	6.72	8.4	91.4	0.2	-4.42	0.72	0.80	2.39	3.5	0.009	1.02	1.0	0.04	16.25	0.01	1.647	9.54	0.44	4.2	95.8	0.0	-0.18	0.79	0.72	0.80	1.79	21041	2652	1	0	2	0	0	logfile
✔	6oiF	20076	2022-05-13	2019-04-09	4.4	4.70	—	4.6	0.008	1.21	0.0	0.05	9.73	0.01	1.596	6.18	0.00	11.4	88.6	0.0	-4.69	0.65	0.66	—	4.6	0.006	0.73	0.0	0.05	12.19	0.00	1.803	28.16	0.00	10.2	89.8	0.0	-2.31	1.72	0.69	0.78	—	115025	7050	49	0	25	0	56750	logfile
✔	6SUE	10312	2022-05-12	2019-09-13	3.4	3.48	3.43	3.3	0.021	1.72	5.0	0.10	10.89	0.01	2.214	1.52	0.01	2.1	97.7	0.3	0.31	0.86	0.81	2.68	3.3	0.004	0.70	0.0	0.04	14.63	0.00	1.506	13.30	0.18	3.5	96.5	0.1	0.73	1.38	0.87	0.84	2.30	108270	13628	6	0	0	0	0	logfile
✔	6GEN	4396	2022-05-17	2018-04-27	3.6	4.67	—	4.5	0.004	0.75	0.0	0.04	20.46	0.01	2.109	5.91	8.77	3.9	96.0	0.0	-4.51	0.78	0.58	-0.18	4.4	0.003	0.76	0.0	0.04	21.34	0.00	1.014	16.32	0.38	4.7	95.3	0.0	-0.45	2.07	0.84	0.74	0.08	44481	4683	29	346	151	0	0	logfile
✔	6P4H	20249	2022-05-15	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	16.95	0.00	2.179	2.65	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.004	0.65	0.0	0.04	17.57	0.00	2.043	12.09	0.69	4.8	95.1	0.0	-0.71	0.66	0.78	0.81	2.06	79374	4862	36	1900	0	0	0	logfile
✔	6EF3	9045	2022-05-17	2018-08-15	4.17	3.04	—	3.8	0.016	1.11	0.0	0.07	11.79	0.01	1.340	5.82	0.07	14.7	85.2	0.0	-5.91	0.65	0.81	—	3.8	0.007	0.88	0.0	0.05	13.23	0.01	2.072	10.93	0.09	8.9	91.1	0.0	-2.55	0.75	0.67	0.83	—	44271	5824	30	0	6	0	0	logfile
✔	6MZU	9307	2022-05-16	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	3.5	0.004	0.67	0.0	0.04	14.50	0.00	2.198	12.84	0.53	1.5	98.5	0.0	-0.13	1.63	0.80	0.88	3.74	32833	4523	42	0	0	0	0	logfile
✔	5YKF	6832	2022-05-18	2017-10-14	4.33	4.45	4.32	4.3	0.006	0.81	4.0	0.05	13.65	0.01	2.030	15.33	8.16	4.4	95.1	0.4	-2.48	0.78	0.77	—	4.3	0.004	0.71	0.0	0.04	12.97	0.00	2.161	14.75	0.00	4.9	95.0	0.1	0.47	3.12	0.79	0.80	—	50988	6536	15	0	12	0	0	logfile
✔	6P4G	20248	2022-05-15	2019-05-27	3.1	3.17	3.35	3.1	0.010	1.45	4.0	0.10	17.35	0.00	2.232	2.68	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.006	0.78	2.0	0.04	17.63	0.01	2.032	13.69	0.26	5.0	94.9	0.1	-1.03	1.38	0.75	0.79	1.66	79374	4862	36	1900	0	0	0	logfile
✔	6RiE	4890	2022-05-17	2019-04-23	3.1	3.16	2.97	3.1	0.005	0.76	0.0	0.05	15.16	0.01	2.067	4.46	0.07	4.2	95.8	0.0	-3.21	0.80	0.85	3.51	3.1	0.003	0.54	0.0	0.04	16.16	0.00	1.371	7.85	0.07	3.2	96.8	0.0	-0.18	0.38	0.82	0.87	3.15	36583	4418	17	41	7	0	0	logfile
✔	6HiX	0231	2022-05-16	2018-08-31	3.39	3.49	3.39	3.4	0.008	1.31	12.0	0.05	14.85	0.01	1.582	14.43	4.18	4.5	95.2	0.3	-3.09	0.84	0.82	2.30	3.4	0.003	0.69	0.0	0.04	16.95	0.01	1.985	12.82	0.41	5.2	94.7	0.1	-0.10	0.78	0.87	0.86	2.10	133849	14850	98	591	477	0	0	logfile
✔	6SKY	10231	2022-05-15	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.12	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.003	0.53	0.0	0.04	16.56	0.01	2.114	5.43	2.72	2.0	98.0	0.0	1.60	2.20	0.74	0.85	2.27	22348	2824	4	0	4	0	0	logfile
✔	6N1V	9319	2022-05-17	2018-11-12	4.0	4.63	—	4.2	0.008	0.96	0.0	0.06	15.13	0.01	2.226	8.06	10.74	6.7	93.1	0.2	-2.97	0.79	0.72	—	4.2	0.004	0.71	0.0	0.05	14.72	0.01	2.112	13.31	0.47	7.4	92.4	0.1	-1.06	1.70	0.86	0.85	—	36498	4470	27	0	144	0	0	logfile
✘	5YKG	6833	2022-05-18	2017-10-14	4.57	4.68	4.39	4.4	0.005	0.71	4.0	0.04	13.41	0.01	2.245	13.33	7.90	4.2	95.6	0.1	-2.42	0.73	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50868	6536	16	0	12	0	0	logfile
✔	6J30	9773	2022-05-12	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.68	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.73	0.0	0.04	12.16	0.00	2.060	19.48	0.00	5.3	94.5	0.2	-0.65	1.90	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6K15	9905	2022-05-14	2019-05-09	3.4	3.68	—	3.6	0.005	0.96	0.0	0.05	10.23	0.01	1.639	5.00	0.33	8.6	91.3	0.1	-4.21	0.74	0.78	2.17	3.6	0.008	0.97	1.0	0.04	14.90	0.00	1.908	10.28	0.37	7.3	92.7	0.0	-0.09	1.38	0.76	0.81	1.11	21486	2655	14	0	1	0	0	logfile
✔	6PEW	20334	2022-05-18	2019-06-21	3.2	3.44	—	3.4	0.009	1.23	12.0	0.08	15.69	0.01	1.770	12.92	3.11	5.2	94.4	0.4	-4.44	0.79	0.85	2.46	3.4	0.005	0.68	0.0	0.05	16.62	0.00	2.088	8.85	0.52	7.2	92.8	0.0	-0.93	1.28	0.79	0.87	2.68	51348	6252	12	0	0	0	0	logfile

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