Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6V4D	21040	2021-12-01	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.80	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	4.1	0.003	0.88	0.0	0.05	16.75	0.01	2.085	13.54	1.01	6.2	93.8	0.0	-0.80	0.63	0.46	0.78	1.50	3095	422	1	0	0	0	0	logfile
✔	6T2C	10368	2021-12-02	2019-10-08	3.52	3.61	3.52	3.6	0.008	0.76	0.0	0.05	14.31	0.01	2.097	4.19	6.25	5.7	94.2	0.1	-3.65	0.69	0.84	2.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10700	1255	5	29	1	0	0	logfile
✔	6UUN	20883	2021-12-01	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	8.93	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.1	0.003	0.57	0.0	0.04	15.94	0.00	2.165	8.41	2.95	2.7	97.3	0.0	0.26	1.01	0.69	0.84	3.03	8980	1202	7	0	0	0	0	logfile
✔	6SZ9	10350	2021-12-02	2019-10-02	3.7	4.00	3.73	3.9	0.005	0.82	0.0	0.05	15.57	0.01	2.293	6.37	0.27	3.2	96.8	0.0	-3.82	0.77	0.79	1.44	3.9	0.004	0.70	0.0	0.04	16.82	0.00	2.070	11.63	0.54	4.4	95.6	0.0	-0.36	0.57	0.77	0.79	1.10	10233	1290	6	0	1	0	0	logfile
✘	6VFi	21173	2021-12-02	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	6WB2	21585	2021-12-01	2020-03-26	4.5	4.71	—	4.5	0.002	0.44	0.0	0.04	11.33	0.00	2.293	7.72	0.17	3.1	96.9	0.0	-3.59	0.86	0.80	—	4.5	0.003	0.56	0.0	0.04	12.04	0.00	2.149	10.01	0.17	3.6	96.4	0.0	-0.22	0.62	0.87	0.83	—	8407	946	4	75	0	0	0	logfile
✔	6W4S	21539	2021-12-01	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.00	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	3.6	0.004	0.68	0.0	0.04	15.50	0.01	2.156	8.80	0.56	3.8	96.2	0.0	1.78	0.45	0.59	0.85	2.13	4986	650	3	0	0	0	0	logfile
✔	7JYi	22526	2021-12-01	2020-08-30	3.4	3.52	—	3.5	0.008	0.75	0.0	0.05	16.05	0.00	2.104	14.16	5.45	10.3	89.2	0.5	-4.54	0.43	0.84	2.04	3.5	0.003	0.66	0.0	0.04	16.57	0.00	2.106	9.55	0.21	8.2	91.7	0.1	-1.64	0.66	0.41	0.85	1.96	8807	1152	4	0	0	0	0	logfile
✔	6SGS	10183	2021-12-01	2019-08-05	3.2	3.29	3.18	3.3	0.004	0.64	0.0	0.04	13.19	0.00	2.011	5.85	0.14	2.8	97.2	0.0	-3.26	0.57	0.69	0.97	3.3	0.003	0.57	0.0	0.04	15.74	0.00	1.949	6.80	0.17	2.4	97.6	0.0	1.27	2.13	0.67	0.85	2.37	54156	3528	8	0	0	0	27338	logfile
✘	6WTi	21897	2021-12-01	2020-05-02	2.38	2.42	—	2.5	0.010	1.20	5.0	0.07	19.47	0.01	1.179	9.07	11.79	4.6	95.3	0.1	-3.48	0.60	0.74	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9980	1207	8	0	14	0	0	logfile
✔	6SGR	10182	2021-12-01	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.13	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.54	0.0	0.04	15.48	0.00	1.986	5.36	0.17	2.8	97.2	0.0	1.14	0.77	0.71	0.86	2.87	54142	3528	8	0	0	0	27330	logfile
✔	6ZoN	11325	2021-12-01	2020-07-07	3.0	3.06	—	2.7	0.010	1.05	0.0	0.06	16.88	0.01	2.199	7.74	0.53	6.3	93.7	0.0	-4.42	0.80	0.72	2.34	2.7	0.008	0.83	0.0	0.04	17.22	0.01	1.819	17.35	2.17	5.9	94.1	0.0	-1.53	0.47	0.77	0.69	1.92	109201	9169	51	1721	183	0	0	logfile
✔	6VJM	21219	2021-12-02	2020-01-16	3.97	4.44	—	4.1	0.005	0.91	0.0	0.06	14.29	0.01	2.297	6.77	0.19	8.3	91.7	0.0	-4.38	0.81	0.79	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10629	1369	8	0	11	0	0	logfile
✔	6PZT	20537	2021-12-01	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.120	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.69	0.00	2.287	9.32	1.72	8.3	91.7	0.0	0.41	0.58	0.63	0.80	2.09	6062	932	2	0	0	0	0	logfile
✔	7BZF	30252	2021-12-01	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	13.90	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.006	0.77	0.0	0.04	15.99	0.00	2.170	12.90	0.19	7.3	92.7	0.0	-1.48	0.47	0.69	0.78	2.03	9932	1200	7	19	2	0	0	logfile
✔	7BTF	30178	2021-12-01	2020-04-01	2.95	3.30	3.02	3.2	0.009	0.73	0.0	0.05	12.87	0.00	2.262	6.36	0.00	7.0	93.0	0.0	-2.91	0.77	0.89	4.15	3.2	0.004	0.62	0.0	0.04	15.36	0.00	2.157	5.32	2.05	4.2	95.8	0.0	-0.23	0.95	0.78	0.90	3.45	9685	1213	5	0	2	0	0	logfile
✔	6M71	30127	2021-12-01	2020-03-16	2.9	3.35	3.10	3.3	0.003	0.59	0.0	0.04	13.42	0.00	1.966	8.99	0.00	4.2	95.8	0.0	-3.06	0.74	0.80	3.55	3.3	0.003	0.62	0.0	0.04	15.48	0.00	2.220	9.35	1.69	3.8	96.2	0.0	0.05	1.72	0.75	0.82	3.15	8614	1085	4	0	0	0	0	logfile
✔	6RJU	4906	2021-12-01	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6V7B	21094	2021-12-02	2019-12-08	3.4	3.51	—	3.4	0.008	0.84	0.0	0.05	16.15	0.01	2.234	4.02	0.11	3.1	96.9	0.0	-6.34	0.58	0.88	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58277	5635	48	646	0	0	0	logfile
✔	6U8Y	20692	2021-12-02	2019-09-06	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48364	6140	30	0	6	0	0	logfile

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