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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6MZV | 9308 | 2022-05-16 | 2018-11-05 | 3.4 | 3.57 | — | 3.5 | 0.006 | 0.73 | 0.0 | 0.05 | 8.48 | 0.01 | 2.343 | 7.32 | 0.34 | 3.4 | 96.6 | 0.0 | -4.51 | 0.79 | 0.86 | 4.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2022-05-16 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.12 | 0.0 | 0.04 | 10.78 | 0.00 | 2.024 | 26.41 | 0.10 | 17.3 | 82.4 | 0.3 | -2.42 | 3.44 | 0.91 | 0.74 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2022-05-13 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 12.80 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✔ | 6SL1 | 10234 | 2022-05-14 | 2019-08-16 | 3.6 | 3.62 | — | 3.5 | 0.011 | 0.83 | 0.0 | 0.05 | 14.89 | 0.01 | 2.016 | 13.61 | 6.72 | 8.4 | 91.4 | 0.2 | -4.42 | 0.72 | 0.80 | 2.39 | 3.5 | 0.009 | 1.02 | 1.0 | 0.04 | 16.25 | 0.01 | 1.647 | 9.54 | 0.44 | 4.2 | 95.8 | 0.0 | -0.18 | 0.79 | 0.72 | 0.80 | 1.79 | 21041 | 2652 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6oiF | 20076 | 2022-05-13 | 2019-04-09 | 4.4 | 4.70 | — | 4.6 | 0.008 | 1.21 | 0.0 | 0.05 | 9.73 | 0.01 | 1.596 | 6.18 | 0.00 | 11.4 | 88.6 | 0.0 | -4.69 | 0.65 | 0.66 | — | 4.6 | 0.006 | 0.73 | 0.0 | 0.05 | 12.19 | 0.00 | 1.803 | 28.16 | 0.00 | 10.2 | 89.8 | 0.0 | -2.31 | 1.72 | 0.69 | 0.78 | — | 115025 | 7050 | 49 | 0 | 25 | 0 | 56750 | logfile |
✔ | 6SUE | 10312 | 2022-05-12 | 2019-09-13 | 3.4 | 3.48 | 3.43 | 3.3 | 0.021 | 1.72 | 5.0 | 0.10 | 10.89 | 0.01 | 2.214 | 1.52 | 0.01 | 2.1 | 97.7 | 0.3 | 0.31 | 0.86 | 0.81 | 2.68 | 3.3 | 0.004 | 0.70 | 0.0 | 0.04 | 14.63 | 0.00 | 1.506 | 13.30 | 0.18 | 3.5 | 96.5 | 0.1 | 0.73 | 1.38 | 0.87 | 0.84 | 2.30 | 108270 | 13628 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2022-05-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.91 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 21.34 | 0.00 | 1.014 | 16.32 | 0.38 | 4.7 | 95.3 | 0.0 | -0.45 | 2.07 | 0.84 | 0.74 | 0.08 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 6P4H | 20249 | 2022-05-15 | 2019-05-27 | 3.2 | 3.13 | 3.20 | 3.1 | 0.010 | 1.43 | 0.0 | 0.10 | 16.95 | 0.00 | 2.179 | 2.65 | 2.17 | 6.6 | 92.8 | 0.7 | -3.62 | 0.67 | 0.75 | 2.61 | 3.1 | 0.004 | 0.65 | 0.0 | 0.04 | 17.57 | 0.00 | 2.043 | 12.09 | 0.69 | 4.8 | 95.1 | 0.0 | -0.71 | 0.66 | 0.78 | 0.81 | 2.06 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6EF3 | 9045 | 2022-05-17 | 2018-08-15 | 4.17 | 3.04 | — | 3.8 | 0.016 | 1.11 | 0.0 | 0.07 | 11.79 | 0.01 | 1.340 | 5.82 | 0.07 | 14.7 | 85.2 | 0.0 | -5.91 | 0.65 | 0.81 | — | 3.8 | 0.007 | 0.88 | 0.0 | 0.05 | 13.23 | 0.01 | 2.072 | 10.93 | 0.09 | 8.9 | 91.1 | 0.0 | -2.55 | 0.75 | 0.67 | 0.83 | — | 44271 | 5824 | 30 | 0 | 6 | 0 | 0 | logfile |
✔ | 6MZU | 9307 | 2022-05-16 | 2018-11-05 | 3.4 | 3.56 | — | 3.5 | 0.006 | 0.72 | 0.0 | 0.05 | 8.11 | 0.01 | 2.309 | 6.63 | 0.03 | 2.5 | 97.5 | 0.0 | -4.73 | 0.78 | 0.85 | 4.19 | 3.5 | 0.004 | 0.67 | 0.0 | 0.04 | 14.50 | 0.00 | 2.198 | 12.84 | 0.53 | 1.5 | 98.5 | 0.0 | -0.13 | 1.63 | 0.80 | 0.88 | 3.74 | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 5YKF | 6832 | 2022-05-18 | 2017-10-14 | 4.33 | 4.45 | 4.32 | 4.3 | 0.006 | 0.81 | 4.0 | 0.05 | 13.65 | 0.01 | 2.030 | 15.33 | 8.16 | 4.4 | 95.1 | 0.4 | -2.48 | 0.78 | 0.77 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.04 | 12.97 | 0.00 | 2.161 | 14.75 | 0.00 | 4.9 | 95.0 | 0.1 | 0.47 | 3.12 | 0.79 | 0.80 | — | 50988 | 6536 | 15 | 0 | 12 | 0 | 0 | logfile |
✔ | 6P4G | 20248 | 2022-05-15 | 2019-05-27 | 3.1 | 3.17 | 3.35 | 3.1 | 0.010 | 1.45 | 4.0 | 0.10 | 17.35 | 0.00 | 2.232 | 2.68 | 3.36 | 8.9 | 90.2 | 0.9 | -4.06 | 0.67 | 0.74 | 2.52 | 3.1 | 0.006 | 0.78 | 2.0 | 0.04 | 17.63 | 0.01 | 2.032 | 13.69 | 0.26 | 5.0 | 94.9 | 0.1 | -1.03 | 1.38 | 0.75 | 0.79 | 1.66 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |
✔ | 6RiE | 4890 | 2022-05-17 | 2019-04-23 | 3.1 | 3.16 | 2.97 | 3.1 | 0.005 | 0.76 | 0.0 | 0.05 | 15.16 | 0.01 | 2.067 | 4.46 | 0.07 | 4.2 | 95.8 | 0.0 | -3.21 | 0.80 | 0.85 | 3.51 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 16.16 | 0.00 | 1.371 | 7.85 | 0.07 | 3.2 | 96.8 | 0.0 | -0.18 | 0.38 | 0.82 | 0.87 | 3.15 | 36583 | 4418 | 17 | 41 | 7 | 0 | 0 | logfile |
✔ | 6HiX | 0231 | 2022-05-16 | 2018-08-31 | 3.39 | 3.49 | 3.39 | 3.4 | 0.008 | 1.31 | 12.0 | 0.05 | 14.85 | 0.01 | 1.582 | 14.43 | 4.18 | 4.5 | 95.2 | 0.3 | -3.09 | 0.84 | 0.82 | 2.30 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.95 | 0.01 | 1.985 | 12.82 | 0.41 | 5.2 | 94.7 | 0.1 | -0.10 | 0.78 | 0.87 | 0.86 | 2.10 | 133849 | 14850 | 98 | 591 | 477 | 0 | 0 | logfile |
✔ | 6SKY | 10231 | 2022-05-15 | 2019-08-16 | 2.8 | 2.95 | — | 3.0 | 0.009 | 0.69 | 0.0 | 0.05 | 13.80 | 0.00 | 2.077 | 5.12 | 3.63 | 4.2 | 95.8 | 0.0 | -2.12 | 0.75 | 0.85 | 2.69 | 3.0 | 0.003 | 0.53 | 0.0 | 0.04 | 16.56 | 0.01 | 2.114 | 5.43 | 2.72 | 2.0 | 98.0 | 0.0 | 1.60 | 2.20 | 0.74 | 0.85 | 2.27 | 22348 | 2824 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6N1V | 9319 | 2022-05-17 | 2018-11-12 | 4.0 | 4.63 | — | 4.2 | 0.008 | 0.96 | 0.0 | 0.06 | 15.13 | 0.01 | 2.226 | 8.06 | 10.74 | 6.7 | 93.1 | 0.2 | -2.97 | 0.79 | 0.72 | — | 4.2 | 0.004 | 0.71 | 0.0 | 0.05 | 14.72 | 0.01 | 2.112 | 13.31 | 0.47 | 7.4 | 92.4 | 0.1 | -1.06 | 1.70 | 0.86 | 0.85 | — | 36498 | 4470 | 27 | 0 | 144 | 0 | 0 | logfile |
✘ | 5YKG | 6833 | 2022-05-18 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.41 | 0.01 | 2.245 | 13.33 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2022-05-12 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.68 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.003 | 0.73 | 0.0 | 0.04 | 12.16 | 0.00 | 2.060 | 19.48 | 0.00 | 5.3 | 94.5 | 0.2 | -0.65 | 1.90 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6K15 | 9905 | 2022-05-14 | 2019-05-09 | 3.4 | 3.68 | — | 3.6 | 0.005 | 0.96 | 0.0 | 0.05 | 10.23 | 0.01 | 1.639 | 5.00 | 0.33 | 8.6 | 91.3 | 0.1 | -4.21 | 0.74 | 0.78 | 2.17 | 3.6 | 0.008 | 0.97 | 1.0 | 0.04 | 14.90 | 0.00 | 1.908 | 10.28 | 0.37 | 7.3 | 92.7 | 0.0 | -0.09 | 1.38 | 0.76 | 0.81 | 1.11 | 21486 | 2655 | 14 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PEW | 20334 | 2022-05-18 | 2019-06-21 | 3.2 | 3.44 | — | 3.4 | 0.009 | 1.23 | 12.0 | 0.08 | 15.69 | 0.01 | 1.770 | 12.92 | 3.11 | 5.2 | 94.4 | 0.4 | -4.44 | 0.79 | 0.85 | 2.46 | 3.4 | 0.005 | 0.68 | 0.0 | 0.05 | 16.62 | 0.00 | 2.088 | 8.85 | 0.52 | 7.2 | 92.8 | 0.0 | -0.93 | 1.28 | 0.79 | 0.87 | 2.68 | 51348 | 6252 | 12 | 0 | 0 | 0 | 0 | logfile |