Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XS6	22301	2023-04-24	2020-07-15	3.7	2.21	—	2.2	0.004	0.83	0.0	0.05	14.26	0.01	2.240	4.49	0.00	6.1	93.9	0.0	-1.99	0.57	0.59	2.30	2.2	0.003	0.59	0.0	0.04	15.91	0.00	2.160	8.43	0.15	5.1	94.9	0.0	-0.95	0.37	0.57	0.59	2.19	18294	2357	3	0	0	0	0	logfile
✔	7KKK	22907	2023-04-19	2020-10-27	3.03	3.38	3.82	3.3	0.021	1.74	3.0	0.12	10.44	0.01	2.364	0.75	0.21	1.8	98.2	0.0	0.60	0.63	0.82	3.30	3.3	0.002	0.57	0.0	0.04	14.50	0.00	1.873	4.96	0.28	1.9	98.1	0.0	0.57	1.49	0.62	0.84	3.19	52320	3360	21	0	54	0	25449	logfile
✔	6HJN	0234	2023-04-22	2018-09-04	3.3	3.88	3.28	3.6	0.008	1.23	3.0	0.11	12.09	0.02	1.734	5.04	2.80	8.9	91.1	0.0	-3.22	0.91	0.91	4.09	3.6	0.003	0.68	0.0	0.04	14.00	0.00	2.096	6.24	0.16	8.3	91.7	0.0	-0.32	0.55	0.89	0.89	3.27	12309	1488	24	0	48	0	0	logfile
✔	7URT	26718	2023-04-20	2022-04-22	2.39	2.51	2.52	2.5	0.008	0.96	0.0	0.07	14.02	0.01	0.512	6.62	1.60	0.9	99.1	0.0	1.22	0.71	0.82	4.21	2.5	0.036	3.37	11.0	0.30	17.01	0.01	0.291	9.27	1.09	1.7	98.2	0.1	1.92	1.13	0.69	0.81	2.58	107880	13260	60	0	120	0	0	logfile
✔	6ZiQ	11228	2023-04-26	2020-06-26	4.33	3.58	4.02	3.4	0.005	0.74	0.0	0.08	14.69	0.00	1.911	19.90	0.00	8.6	91.4	0.0	-1.50	0.48	0.72	—	3.4	0.003	0.61	0.0	0.08	14.71	0.00	1.943	12.69	0.08	5.5	94.5	0.0	0.57	0.60	0.47	0.72	—	22255	1385	15	0	0	0	11316	logfile
✔	7TPK	26058	2023-04-19	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.69	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.004	0.63	0.0	0.04	15.27	0.00	2.331	4.95	0.00	4.2	95.8	0.0	-1.45	1.26	0.65	0.81	3.26	1484	194	1	0	1	0	0	logfile
✔	6RDW	4833	2023-04-20	2019-04-12	3.8	3.78	—	3.8	0.010	1.05	0.0	0.06	15.03	0.01	2.050	6.72	0.55	5.8	94.0	0.2	-4.32	0.66	0.83	1.85	3.8	0.003	0.64	0.0	0.04	16.47	0.00	1.917	11.85	0.32	4.5	95.4	0.1	-0.25	0.58	0.66	0.83	1.25	53748	7103	37	0	11	0	0	logfile
✔	7JLX	22383	2023-04-20	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.003	0.75	0.0	0.04	7.17	0.00	2.306	8.03	0.00	17.7	82.3	0.0	-2.25	2.42	0.48	0.53	—	3288	664	4	0	0	0	0	logfile
✔	6XBW	22121	2023-04-22	2020-06-07	3.37	3.48	—	3.4	0.010	1.30	80.0	0.09	15.41	0.01	1.049	8.64	0.61	3.3	96.5	0.3	-5.55	0.74	0.85	2.39	3.4	0.005	0.74	0.0	0.04	16.62	0.00	2.019	11.18	0.45	5.5	94.5	0.1	-0.71	1.10	0.76	0.89	2.20	63090	8186	38	0	18	0	0	logfile
✘	7PNK	13548	2023-04-21	2021-09-07	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60673	6142	74	0	250	0	0	logfile
✔	7YAD	33709	2023-04-20	2022-06-27	2.66	2.45	2.92	2.2	0.003	0.55	0.0	0.04	12.58	0.00	2.165	5.84	0.00	4.5	95.3	0.1	-1.22	0.71	0.77	3.55	2.2	0.003	0.60	0.0	0.04	15.11	0.00	2.169	7.20	1.12	5.4	94.5	0.1	-1.14	2.15	0.73	0.80	2.89	6728	848	8	0	6	0	0	logfile
✔	6oEE	20020	2023-04-28	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	3.8	0.003	0.79	0.0	0.04	17.76	0.00	2.249	11.89	0.67	12.7	87.3	0.0	-1.07	0.97	0.35	0.75	0.82	28000	3402	14	0	0	0	0	logfile
✔	6HJQ	0236	2023-04-26	2018-09-04	4.1	4.38	4.03	4.1	0.006	0.94	0.0	0.06	10.07	0.01	1.406	4.81	0.13	5.6	94.3	0.1	-3.06	0.83	0.87	—	4.1	0.003	0.68	0.0	0.04	11.52	0.00	2.000	9.92	0.00	5.4	94.6	0.0	-0.55	1.66	0.83	0.87	—	22530	2871	27	0	42	0	0	logfile
✔	8A8V	15241	2023-04-28	2022-06-24	3.34	3.62	3.37	3.7	0.004	0.79	0.0	0.05	15.57	0.01	2.208	8.03	0.11	3.5	96.5	0.0	-0.58	0.75	0.79	1.81	3.7	0.003	0.62	0.0	0.04	16.86	0.00	2.175	11.46	0.35	3.2	96.8	0.0	0.71	0.42	0.76	0.83	1.53	27164	3396	13	0	33	0	0	logfile
✔	7T9i	25758	2023-04-26	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.76	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.67	0.0	0.04	15.11	0.00	1.904	9.43	2.50	6.3	93.7	0.0	-0.52	1.14	0.74	0.72	2.51	23529	1532	11	0	8	0	11557	logfile
✔	6X6K	22076	2023-04-21	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.004	0.69	0.0	0.05	16.58	0.00	2.126	16.02	0.31	5.4	94.6	0.0	-0.16	0.63	0.70	0.85	2.39	60970	7602	42	0	0	0	0	logfile
✔	6HJR	0237	2023-04-22	2018-09-04	4.2	4.57	4.24	4.3	0.009	1.13	0.0	0.07	11.24	0.01	2.200	6.58	0.70	10.6	89.2	0.2	-3.38	0.84	0.88	—	4.3	0.002	0.65	0.0	0.04	12.00	0.00	2.090	9.54	0.00	7.3	92.5	0.1	-0.81	0.60	0.83	0.87	—	12579	1578	19	0	31	0	0	logfile
✔	6RDQ	4827	2023-04-20	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	14.97	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.004	0.69	0.0	0.04	16.63	0.00	1.887	14.01	0.37	5.2	94.6	0.1	-0.59	0.62	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✔	6oEG	20020	2023-04-24	2019-03-27	3.8	3.93	—	3.9	0.008	1.12	0.0	0.06	13.46	0.01	2.370	5.57	5.56	8.1	91.9	0.0	-4.92	0.42	0.79	3.01	3.9	0.004	0.82	0.0	0.05	15.80	0.00	2.022	10.49	0.55	8.2	91.8	0.0	-1.28	0.93	0.43	0.78	2.38	18564	2268	14	0	0	0	0	logfile
✘	7JRo	22447	2023-04-22	2020-08-12	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12747	1492	17	0	26	0	0	logfile

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