Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EXP	28658	2023-07-05	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.70	0.0	0.04	13.28	0.00	2.061	14.99	0.00	4.7	95.3	0.0	0.30	1.14	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	7AP9	11851	2023-07-14	2020-10-16	3.01	3.70	—	3.2	0.008	0.68	0.0	0.05	12.00	0.00	2.023	4.33	2.91	6.9	93.1	0.0	-0.45	0.90	0.88	3.79	3.2	0.004	0.61	0.0	0.04	13.63	0.00	2.030	7.49	0.14	6.1	93.9	0.0	0.37	0.53	0.90	0.89	3.35	30881	3782	14	11	5	0	0	logfile
✔	7YZo	14391	2023-07-08	2022-02-21	3.4	3.53	3.40	3.5	0.004	0.70	0.0	0.04	17.64	0.00	1.498	5.76	0.08	3.2	96.8	0.0	0.79	0.80	0.83	2.80	3.5	0.005	0.62	0.0	0.04	19.10	0.00	1.880	8.47	0.47	3.7	96.3	0.0	0.07	0.36	0.82	0.85	2.45	13068	1497	10	62	8	0	0	logfile
✔	7KEJ	22839	2023-07-07	2020-10-11	3.8	3.55	—	3.6	0.021	1.73	0.0	0.11	10.03	0.01	1.201	0.59	0.00	0.4	99.6	0.0	1.20	0.82	0.84	4.49	3.6	0.003	0.64	0.0	0.04	14.71	0.00	2.126	6.60	0.41	2.0	98.0	0.0	0.01	1.66	0.82	0.83	3.57	13806	1740	18	0	24	0	0	logfile
✔	5W1R	8751	2023-07-12	2017-06-04	4.4	4.48	—	4.4	0.006	1.21	2.0	0.06	14.97	0.01	1.238	42.66	1.30	15.6	79.1	5.4	-5.31	0.66	0.69	—	4.4	0.003	0.91	0.0	0.04	13.29	0.01	2.114	13.00	0.04	9.3	89.9	0.7	-1.87	1.91	0.66	0.69	—	25559	3563	1	0	0	0	0	logfile
✔	7JV6	22494	2023-07-12	2020-08-20	3.0	3.20	3.11	3.2	0.014	1.41	0.0	0.09	10.09	0.01	2.402	0.75	0.00	2.8	97.2	0.0	0.65	0.71	0.72	3.26	3.1	0.004	0.63	0.0	0.05	14.65	0.00	2.187	6.66	3.09	3.1	96.9	0.0	0.00	0.63	0.76	0.79	2.82	26648	3612	24	0	60	0	0	logfile
✔	6F2D	4173	2023-07-06	2017-11-24	4.2	4.27	4.05	4.1	0.010	1.19	0.0	0.05	9.30	0.01	2.023	26.29	0.51	16.3	83.0	0.7	-6.32	0.71	0.72	—	4.1	0.003	0.89	0.0	0.04	13.03	0.01	2.125	12.83	0.00	7.7	91.7	0.6	0.23	2.03	0.75	0.77	—	12541	1629	10	0	0	0	0	logfile
✔	6Lo8	0935	2023-07-04	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.004	0.83	0.0	0.04	17.18	0.00	2.116	14.07	0.57	5.0	95.0	0.0	1.41	0.93	0.66	0.79	1.78	7972	997	10	0	0	0	0	logfile
✔	6B3o	7040	2023-07-04	2017-09-22	4.1	4.04	—	4.1	0.024	1.82	0.0	0.11	10.99	0.01	2.285	2.28	0.34	2.1	97.6	0.3	1.14	0.69	0.76	—	4.0	0.005	0.75	0.0	0.04	14.24	0.00	2.119	10.89	0.00	4.7	95.0	0.3	0.76	1.67	0.71	0.77	—	7980	1032	3	0	0	0	0	logfile
✔	5ZR1	6941	2023-07-10	2018-04-21	3.0	3.18	—	3.1	0.007	1.04	2.0	0.06	15.46	0.01	2.050	4.08	0.65	4.3	95.7	0.0	-5.16	0.77	0.84	3.94	3.1	0.005	0.65	0.0	0.04	18.51	0.00	1.851	7.81	2.34	3.8	96.2	0.0	-0.31	1.59	0.75	0.86	3.09	22260	2509	11	82	6	0	0	logfile
✔	6DZM	8936	2023-07-07	2018-07-05	4.29	4.66	—	4.3	0.008	0.96	0.0	0.05	9.60	0.01	2.058	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.003	0.76	0.0	0.05	12.09	0.00	2.177	14.52	0.00	8.9	91.1	0.0	-1.87	0.98	0.78	0.83	—	13584	1695	24	0	27	0	0	logfile
✔	7RHZ	24472	2023-07-06	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.07	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.004	0.65	0.0	0.04	21.35	0.00	2.012	13.15	0.00	4.8	95.2	0.0	0.40	1.31	0.88	0.77	—	12550	615	4	88	0	0	5875	logfile
✔	6PCi	20301	2023-07-09	2019-06-17	4.12	4.25	—	4.1	0.009	1.05	0.0	0.06	8.96	0.01	2.268	6.36	0.00	6.8	93.2	0.0	-2.72	0.85	0.84	—	4.1	0.004	0.73	0.0	0.05	12.81	0.00	2.112	17.12	0.05	6.5	93.5	0.0	-0.84	0.84	0.85	0.84	—	18828	2382	24	0	27	0	0	logfile
✔	7YZP	14393	2023-07-09	2022-02-21	4.0	4.15	4.02	4.0	0.003	0.62	1.0	0.04	17.63	0.00	1.593	8.32	0.00	4.2	95.8	0.0	0.73	0.83	0.78	—	4.0	0.002	0.63	0.0	0.04	19.11	0.00	2.004	11.08	0.07	3.8	96.2	0.0	0.76	0.37	0.84	0.79	—	14107	1633	9	59	8	0	0	logfile
✔	6H3L	0135	2023-07-13	2018-07-19	4.2	4.88	—	3.9	0.015	1.70	0.0	0.08	11.55	0.01	2.124	5.25	0.06	7.7	91.4	0.9	-1.43	0.92	0.69	—	3.7	0.003	0.62	0.0	0.04	13.27	0.00	1.891	16.48	0.00	6.8	93.0	0.2	-1.95	1.34	0.91	0.76	—	29319	1881	3	0	0	0	14388	logfile
✔	6VX6	21431	2023-07-07	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.003	0.61	0.0	0.04	16.35	0.00	2.069	7.45	1.38	1.4	98.6	0.0	0.77	0.98	0.77	0.89	3.36	15061	1830	10	0	6	0	0	logfile
✔	6Fo1	4287	2023-07-08	2018-02-05	3.57	3.71	—	3.6	0.007	0.82	0.0	0.04	10.81	0.00	2.039	23.07	0.06	6.1	93.9	0.1	-3.76	0.83	0.85	2.87	3.6	0.003	0.69	0.0	0.04	15.43	0.00	2.201	9.81	0.30	3.4	96.5	0.1	0.44	0.79	0.83	0.84	2.15	15645	2012	13	0	6	0	0	logfile
✔	6V9Q	21126	2023-07-13	2019-12-15	2.9	3.05	—	3.0	0.008	1.12	1.0	0.07	12.82	0.01	2.040	9.79	1.56	6.5	93.4	0.1	-4.27	0.76	0.83	3.71	3.0	0.006	0.75	0.0	0.05	16.98	0.01	2.101	8.90	3.38	6.2	93.8	0.0	-0.56	1.72	0.75	0.86	3.27	28090	3337	13	61	4	0	0	logfile
✘	6PM5	20388	2023-07-07	2019-07-01	3.1	3.38	—	3.4	0.002	0.49	0.0	0.06	6.82	0.00	2.275	4.99	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13975	1735	15	0	15	0	0	logfile
✔	7JW0	22512	2023-07-12	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile

• ← previous
• Page 6 of 500
• next →