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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oM6 | 20121 | 2024-03-21 | 2019-04-18 | 3.1 | 3.70 | 3.14 | 3.3 | 0.008 | 0.91 | 0.0 | 0.05 | 23.86 | 0.02 | 2.005 | 6.68 | 0.30 | 4.2 | 94.7 | 1.1 | -3.33 | 0.89 | 0.88 | 2.32 | 3.3 | 0.007 | 0.74 | 1.0 | 0.04 | 23.31 | 0.01 | 1.972 | 17.66 | 5.01 | 4.7 | 95.2 | 0.1 | -0.44 | 0.55 | 0.90 | 0.91 | 2.06 | 144295 | 5715 | 55 | 4638 | 1 | 0 | 0 | logfile |
✔ | 7C79 | 30296 | 2024-03-20 | 2020-05-24 | 2.5 | 3.14 | — | 3.0 | 0.002 | 0.59 | 0.0 | 0.04 | 18.30 | 0.00 | 1.974 | 8.78 | 0.09 | 5.7 | 94.2 | 0.1 | -2.99 | 0.74 | 0.68 | 0.77 | 3.0 | 0.003 | 0.71 | 0.0 | 0.04 | 19.61 | 0.00 | 2.096 | 10.72 | 3.31 | 6.8 | 93.2 | 0.0 | -0.38 | 1.42 | 0.80 | 0.78 | 1.60 | 27324 | 2519 | 14 | 331 | 2 | 0 | 0 | logfile |
✔ | 5GAM | 8011 | 2024-03-17 | 2015-12-15 | 3.7 | 4.03 | — | 3.9 | 0.008 | 1.49 | 11.0 | 0.10 | 22.02 | 0.01 | 1.976 | 11.79 | 6.60 | 10.0 | 88.2 | 1.8 | -2.90 | 0.72 | 0.57 | 1.24 | 3.9 | 0.003 | 0.85 | 0.0 | 0.05 | 21.22 | 0.01 | 2.035 | 17.78 | 4.34 | 7.3 | 92.5 | 0.2 | -0.96 | 1.69 | 0.80 | 0.80 | 1.22 | 19123 | 2002 | 13 | 166 | 19 | 0 | 0 | logfile |
✔ | 7V07 | 26940 | 2024-03-14 | 2022-05-10 | 2.8 | 2.64 | 3.01 | 2.7 | 0.007 | 1.00 | 1.0 | 0.06 | 21.79 | 0.01 | 2.251 | 8.29 | 3.89 | 1.8 | 97.9 | 0.3 | 1.10 | 0.63 | 0.86 | 3.66 | 2.7 | 0.002 | 0.57 | 0.0 | 0.04 | 18.42 | 0.01 | 2.181 | 7.65 | 2.32 | 1.3 | 98.7 | 0.0 | 2.07 | 1.35 | 0.62 | 0.87 | 4.02 | 9162 | 1114 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7CAD | 30327 | 2024-03-14 | 2020-06-08 | 3.41 | 3.74 | — | 3.7 | 0.004 | 0.72 | 0.0 | 0.05 | 13.11 | 0.00 | 2.196 | 11.28 | 0.57 | 7.6 | 92.3 | 0.2 | -4.35 | 0.75 | 0.84 | 2.98 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 15.10 | 0.00 | 2.211 | 10.10 | 3.42 | 5.2 | 94.8 | 0.0 | -1.39 | 0.41 | 0.75 | 0.86 | 2.13 | 10026 | 1318 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NWW | 12636 | 2024-03-22 | 2021-03-17 | 3.05 | 3.83 | 3.02 | 2.9 | 0.010 | 0.97 | 0.0 | 0.06 | 22.83 | 0.02 | 1.667 | 7.33 | 0.49 | 3.6 | 96.3 | 0.2 | -3.85 | 0.89 | 0.86 | 3.17 | 3.0 | 0.006 | 0.74 | 0.0 | 0.04 | 22.90 | 0.01 | 1.023 | 14.47 | 2.90 | 3.9 | 96.1 | 0.0 | -0.13 | 2.45 | 0.92 | 0.91 | 2.72 | 145149 | 5738 | 67 | 4651 | 415 | 0 | 0 | logfile |
✔ | 7KJW | 22900 | 2024-03-11 | 2020-10-26 | 2.9 | 3.11 | — | 3.1 | 0.006 | 0.56 | 0.0 | 0.04 | 16.98 | 0.00 | 2.198 | 4.70 | 0.87 | 2.6 | 97.3 | 0.1 | 0.64 | 0.76 | 0.83 | 4.14 | 3.1 | 0.003 | 0.53 | 0.0 | 0.04 | 17.99 | 0.00 | 2.258 | 7.83 | 0.87 | 2.5 | 97.5 | 0.0 | 0.34 | 0.92 | 0.78 | 0.87 | 3.99 | 8561 | 949 | 5 | 44 | 2 | 0 | 0 | logfile |
✔ | 7YM8 | 33924 | 2024-03-10 | 2022-07-27 | 2.92 | 3.14 | 2.90 | 3.2 | 0.006 | 0.86 | 0.0 | 0.05 | 16.01 | 0.01 | 2.331 | 4.04 | 0.00 | 4.2 | 95.8 | 0.0 | -3.62 | 0.68 | 0.81 | 3.68 | 3.2 | 0.002 | 0.53 | 0.0 | 0.04 | 16.18 | 0.00 | 2.228 | 6.41 | 1.86 | 3.5 | 96.5 | 0.0 | 0.28 | 0.39 | 0.65 | 0.82 | 3.04 | 4287 | 556 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 6DQN | 7981 | 2024-03-18 | 2018-06-11 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138876 | 8744 | 8 | 0 | 8 | 0 | 69396 | logfile |
✘ | 6DRC | 7994 | 2024-03-18 | 2018-06-11 | 3.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138860 | 8744 | 8 | 0 | 16 | 0 | 69384 | logfile |
✔ | 8C92 | 16499 | 2024-03-10 | 2023-01-21 | 3.79 | 4.24 | 4.02 | 3.8 | 0.002 | 0.38 | 0.0 | 0.03 | 22.72 | 0.00 | 1.872 | 5.69 | 0.00 | 4.5 | 95.4 | 0.1 | 0.46 | 0.83 | 0.79 | 1.60 | 3.8 | 0.003 | 0.54 | 0.0 | 0.03 | 23.05 | 0.00 | 2.032 | 15.59 | 3.53 | 7.0 | 93.0 | 0.0 | -0.87 | 0.53 | 0.84 | 0.83 | 1.67 | 53489 | 1700 | 17 | 1873 | 0 | 0 | 0 | logfile |
✔ | 6BGo | 7098 | 2024-03-25 | 2017-10-29 | 4.2 | 4.71 | — | 4.0 | 0.007 | 0.99 | 0.0 | 0.05 | 12.93 | 0.01 | 1.245 | 13.74 | 1.01 | 3.0 | 96.9 | 0.1 | -0.26 | 0.83 | 0.75 | — | 4.0 | 0.003 | 0.60 | 0.0 | 0.04 | 12.78 | 0.00 | 2.024 | 6.84 | 0.06 | 3.2 | 96.7 | 0.0 | 2.10 | 1.56 | 0.90 | 0.86 | — | 46500 | 6170 | 35 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UE9 | 20751 | 2024-03-17 | 2019-09-20 | 2.9 | 3.89 | — | 4.2 | 0.007 | 1.05 | 0.0 | 0.06 | 14.61 | 0.01 | 2.241 | 3.10 | 0.32 | 11.2 | 88.8 | 0.0 | -3.87 | 0.59 | 0.37 | 0.26 | 3.6 | 0.004 | 1.00 | 0.0 | 0.05 | 15.55 | 0.01 | 2.152 | 11.81 | 2.34 | 7.4 | 92.6 | 0.0 | -1.74 | 1.74 | 0.78 | 0.81 | 1.73 | 18227 | 2475 | 17 | 0 | 12 | 0 | 0 | logfile |
✘ | 6o2P | 0611 | 2024-03-14 | 2019-02-24 | 3.3 | 3.80 | — | 3.8 | 0.014 | 1.83 | 0.0 | 0.64 | 22.92 | 0.00 | 1.908 | 0.66 | 1.16 | 4.5 | 95.5 | 0.0 | -3.17 | 0.51 | 0.72 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9767 | 1179 | 3 | 0 | 29 | 0 | 0 | logfile |
✔ | 6UTi | 20880 | 2024-03-25 | 2019-10-29 | 3.4 | 3.66 | 3.48 | 3.7 | 0.007 | 1.12 | 0.0 | 0.06 | 10.05 | 0.01 | 2.232 | 3.12 | 0.22 | 5.1 | 94.8 | 0.1 | -2.89 | 0.75 | 0.83 | 2.32 | 3.6 | 0.004 | 0.89 | 7.0 | 0.05 | 15.24 | 0.01 | 2.151 | 5.05 | 2.30 | 3.2 | 96.7 | 0.1 | 0.53 | 1.37 | 0.74 | 0.86 | 2.35 | 46396 | 6006 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6V3K | 21038 | 2024-03-15 | 2019-11-25 | 3.4 | 3.77 | 3.45 | 3.7 | 0.006 | 0.73 | 0.0 | 0.04 | 19.80 | 0.01 | 1.659 | 9.64 | 0.19 | 4.9 | 95.1 | 0.0 | -2.30 | 0.76 | 0.88 | 3.33 | 3.7 | 0.005 | 0.58 | 0.0 | 0.04 | 20.39 | 0.00 | 1.897 | 7.74 | 2.04 | 3.7 | 96.3 | 0.0 | 0.21 | 0.88 | 0.68 | 0.89 | 3.00 | 11314 | 1226 | 16 | 72 | 10 | 0 | 0 | logfile |
✔ | 7YWA | 34151 | 2024-03-10 | 2022-08-22 | 3.26 | 2.85 | 3.14 | 3.1 | 0.006 | 0.87 | 0.0 | 0.05 | 18.91 | 0.00 | 1.718 | 11.41 | 0.85 | 3.0 | 97.0 | 0.0 | 0.53 | 0.37 | 0.69 | 2.31 | 3.1 | 0.003 | 0.52 | 0.0 | 0.04 | 19.16 | 0.00 | 1.966 | 11.50 | 4.09 | 2.4 | 97.6 | 0.0 | 0.86 | 0.50 | 0.44 | 0.73 | 2.05 | 5808 | 744 | 6 | 6 | 4 | 0 | 0 | logfile |
✔ | 8G30 | 29686 | 2024-03-18 | 2023-02-06 | 3.1 | 4.00 | 3.09 | 3.6 | 0.016 | 1.87 | 0.0 | 0.09 | 16.96 | 0.01 | 2.213 | 0.83 | 0.56 | 6.2 | 93.5 | 0.3 | -1.88 | 0.83 | 0.87 | 3.70 | 3.6 | 0.004 | 0.74 | 0.0 | 0.04 | 13.77 | 0.00 | 2.159 | 10.75 | 2.49 | 3.4 | 96.4 | 0.2 | -0.39 | 0.66 | 0.79 | 0.82 | 3.01 | 20449 | 2503 | 40 | 0 | 91 | 0 | 0 | logfile |
✔ | 7TAD | 25771 | 2024-03-11 | 2021-12-20 | 3.6 | 3.82 | — | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 14.28 | 0.01 | 2.126 | 10.39 | 0.00 | 2.8 | 97.2 | 0.0 | 0.68 | 0.62 | 0.64 | 1.42 | 3.8 | 0.002 | 0.59 | 0.0 | 0.04 | 16.03 | 0.00 | 2.191 | 8.10 | 1.12 | 1.7 | 98.3 | 0.0 | 2.74 | 0.49 | 0.64 | 0.67 | 1.20 | 8550 | 1113 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6Y6X | 10709 | 2024-03-19 | 2020-02-27 | 2.8 | 2.76 | — | 2.7 | 0.007 | 1.01 | 0.0 | 0.07 | 24.05 | 0.01 | 1.914 | 4.55 | 0.96 | 7.0 | 92.7 | 0.3 | -2.80 | 0.80 | 0.87 | 3.06 | 2.7 | 0.007 | 0.74 | 0.0 | 0.05 | 23.83 | 0.01 | 1.794 | 9.77 | 2.87 | 6.9 | 93.1 | 0.1 | -0.40 | 1.16 | 0.82 | 0.91 | 3.05 | 140969 | 6788 | 60 | 4049 | 235 | 0 | 0 | logfile |