Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CKB	30384	2023-08-12	2020-07-16	3.24	3.29	—	3.2	0.008	0.88	0.0	0.05	16.33	0.01	2.160	6.96	1.05	4.0	96.0	0.0	-0.87	0.85	0.88	2.17	3.2	0.006	0.72	0.0	0.05	17.10	0.00	2.145	7.26	1.43	2.5	97.5	0.0	-0.14	0.28	0.85	0.90	2.74	114840	15840	180	0	0	0	0	logfile
✔	7TS0	26104	2023-08-11	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.005	0.63	0.0	0.04	15.45	0.00	2.073	6.94	2.05	2.2	97.8	0.0	1.52	1.63	0.62	0.84	2.85	9383	1186	6	0	0	0	0	logfile
✔	8AXK	15700	2023-08-26	2022-08-31	4.05	4.12	3.79	4.1	0.002	0.46	0.0	0.04	10.52	0.00	2.167	6.25	3.27	5.0	95.0	0.0	3.62	0.41	0.83	—	4.1	0.003	0.70	0.0	0.04	13.37	0.00	2.049	10.66	0.06	5.4	94.6	0.0	2.73	2.12	0.41	0.83	—	44141	5608	85	0	0	0	0	logfile
✔	6HV9	0288	2023-08-26	2018-10-10	4.98	4.88	—	4.5	0.012	1.86	14.0	0.09	12.25	0.01	1.447	9.25	0.49	10.9	88.8	0.3	-4.02	0.78	0.66	—	4.5	0.003	0.77	0.0	0.04	13.30	0.00	2.086	16.13	0.02	8.1	91.8	0.1	-1.67	1.65	0.79	0.68	—	47617	6040	18	49	4	0	0	logfile
✔	7UAE	26422	2023-08-09	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	12.76	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.003	0.70	0.0	0.04	16.00	0.00	2.188	7.54	1.68	5.4	94.6	0.0	0.27	1.66	0.68	0.89	4.14	4513	535	7	0	18	0	0	logfile
✘	6LQM	0948	2023-08-23	2020-01-14	3.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139464	7108	53	3808	251	0	0	logfile
✔	6QPi	4614	2023-08-09	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.003	0.53	0.0	0.04	5.28	0.00	2.448	1.19	0.00	2.6	97.4	0.0	1.11	0.59	0.41	0.64	—	2288	462	2	0	0	0	0	logfile
✔	7P5J	13200	2023-08-09	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	15.50	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.79	0.0	0.04	17.82	0.00	2.172	11.51	0.45	1.8	98.2	0.0	3.11	0.48	0.53	0.77	—	6250	798	6	0	8	0	0	logfile
✔	6R9B	4769	2023-08-18	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.54	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	3.7	0.004	0.85	0.0	0.05	15.31	0.00	2.124	14.93	0.70	9.8	90.1	0.1	-2.04	1.63	0.70	0.61	0.99	25880	3401	7	0	0	0	0	logfile
✔	6LW1	30002	2023-08-12	2020-02-06	2.8	2.98	—	3.1	0.010	1.05	0.0	0.07	17.53	0.00	2.119	11.43	7.10	10.3	89.2	0.5	-3.85	0.67	0.80	2.54	3.1	0.003	0.62	0.0	0.05	17.99	0.00	2.108	10.95	4.74	5.9	93.8	0.3	-2.06	0.48	0.62	0.78	2.80	12412	1526	4	0	2	0	0	logfile
✔	8H14	34424	2023-08-18	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.84	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.003	0.55	0.0	0.04	14.67	0.00	2.212	3.63	0.41	2.6	97.4	0.0	-0.02	0.39	0.79	0.87	2.92	24750	3087	6	0	45	0	0	logfile
✔	7Mi5	23840	2023-08-14	2021-04-16	3.57	3.95	—	3.9	0.010	1.47	4.0	0.06	21.14	0.01	1.662	35.40	11.95	9.4	90.5	0.1	-2.45	0.68	0.65	0.89	3.9	0.003	0.73	0.0	0.04	19.02	0.00	2.093	12.92	0.54	5.6	94.4	0.0	-0.11	1.77	0.75	0.79	0.90	15469	1785	14	60	7	0	0	logfile
✔	7WQ4	32699	2023-08-10	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✔	5TQQ	8435	2023-08-12	2016-10-24	3.76	2.84	—	3.8	0.008	1.52	32.0	0.09	12.22	0.01	2.136	6.30	0.89	4.7	95.2	0.1	-0.21	0.64	0.72	1.71	3.8	0.003	0.68	0.0	0.04	14.63	0.00	2.137	13.21	0.30	2.5	97.5	0.0	1.58	1.52	0.69	0.83	1.42	12574	1642	6	0	0	0	0	logfile
✘	6CMX	7526	2023-08-11	2018-03-06	3.1	3.31	—	3.3	0.009	1.01	0.0	0.14	10.09	0.01	1.638	21.48	1.51	9.6	90.2	0.2	-3.85	0.72	0.76	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10139	1300	4	0	17	0	0	logfile
✔	6R7X	4746	2023-08-11	2019-03-29	3.47	3.59	3.33	3.6	0.005	0.79	0.0	0.04	13.63	0.01	2.289	3.15	0.00	2.4	97.4	0.2	-3.00	0.65	0.86	3.62	3.6	0.003	0.53	0.0	0.04	15.06	0.00	2.246	7.14	0.19	1.9	98.1	0.0	1.77	0.34	0.64	0.88	3.36	10630	1258	4	0	28	0	0	logfile
✔	8H15	34425	2023-08-17	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.03	1.0	0.07	14.04	0.01	2.182	2.84	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.003	0.56	0.0	0.04	15.17	0.00	2.116	4.02	0.24	3.3	96.7	0.0	0.01	1.39	0.75	0.84	2.78	22813	2888	6	0	18	0	0	logfile
✔	8EY2	28666	2023-08-09	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.66	0.0	0.04	16.12	0.00	2.101	15.52	0.55	7.0	93.0	0.0	-0.88	1.13	0.79	0.81	2.19	4908	634	4	0	0	0	0	logfile
✔	8G8G	29850	2023-08-13	2023-02-17	3.2	4.22	3.27	3.4	0.005	0.59	0.0	0.03	27.75	0.00	1.622	6.71	0.64	1.8	98.2	0.0	-0.50	0.70	0.50	0.77	3.0	0.004	0.65	0.0	0.03	28.86	0.00	2.193	11.69	0.13	2.9	97.1	0.0	1.87	1.57	0.91	0.87	1.73	14558	931	11	348	0	0	0	logfile
✔	6V1S	21016	2023-08-15	2019-11-21	3.8	3.91	—	3.9	0.007	0.75	0.0	0.05	14.40	0.01	2.181	10.19	0.25	12.6	87.4	0.0	-5.42	0.74	0.86	2.93	3.8	0.003	0.62	0.0	0.04	15.96	0.00	2.208	8.10	0.30	6.5	93.5	0.0	-2.74	1.19	0.74	0.85	2.31	17964	2293	15	0	14	0	0	logfile

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