Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JD0	6631	2023-02-24	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile
✔	3JD1	6634	2023-02-24	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2023-02-24	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.8	0.004	0.60	0.0	0.04	14.29	0.00	2.187	9.17	0.44	4.1	95.9	0.0	0.18	1.19	0.81	0.87	2.36	23814	2976	12	0	12	0	0	logfile
✔	3JD3	6632	2023-02-24	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD4	6633	2023-02-24	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.60	0.00	2.026	11.75	0.32	3.9	96.1	0.0	0.50	0.72	0.80	0.87	2.40	24054	2982	12	0	18	0	0	logfile
✔	3JD8	6640	2023-02-19	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.07	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.87	0.0	0.05	12.42	0.00	2.050	18.43	0.00	8.4	90.7	0.9	-0.63	1.77	0.57	0.72	—	8050	1133	7	0	25	0	0	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	3LoS	5137	2023-02-24	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✘	4CE4	2490	2023-02-24	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	4Ui9	2924	2023-02-25	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.004	0.85	0.0	0.04	17.10	0.00	2.084	16.34	0.45	5.7	93.9	0.4	0.75	3.18	0.89	0.84	1.24	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2023-02-20	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.22	0.00	2.111	17.83	0.00	10.2	88.5	1.3	-1.76	1.66	0.55	0.74	—	8518	791	5	0	458	0	0	logfile
✔	4UQ8	2676	2023-02-26	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.47	0.00	2.110	23.19	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	4V19	2787	2023-02-27	2014-09-25	3.4	3.44	—	3.4	0.009	1.32	0.0	0.05	20.28	0.05	1.860	9.75	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.003	1.00	0.0	0.04	19.43	0.01	1.122	8.45	0.58	3.5	96.5	0.1	0.02	1.52	0.76	0.87	2.12	69409	4361	42	1583	171	204	0	logfile
✔	4V1A	2787	2023-02-28	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.70	0.0	0.04	16.87	0.00	2.083	10.93	0.29	4.4	95.5	0.1	0.59	1.92	0.38	0.79	1.76	31917	3843	24	0	94	0	0	logfile
✔	5A63	3061	2023-02-19	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.75	0.0	0.05	17.83	0.00	2.195	13.49	0.48	5.9	93.7	0.3	-0.03	3.23	0.62	0.82	2.08	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2023-02-20	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2023-02-19	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	5A8L	3099	2023-02-20	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.91	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	5ACo	3121	2023-02-23	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.66	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.004	0.71	0.0	0.05	11.25	0.00	2.046	11.61	0.05	7.0	92.5	0.5	-0.83	1.60	0.82	0.83	—	21297	2415	69	0	192	0	0	logfile
✔	5AEY	2850	2023-02-20	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.75	0.0	0.04	15.74	0.00	2.150	14.50	0.00	9.5	90.2	0.3	-1.36	2.82	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile

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