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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JD0 | 6631 | 2023-02-24 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.40 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.28 | 0.00 | 2.128 | 14.60 | 0.16 | 4.9 | 94.9 | 0.1 | 0.69 | 2.53 | 0.85 | 0.86 | 2.35 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JD1 | 6634 | 2023-02-24 | 2016-03-28 | 3.3 | 2.71 | — | 3.0 | 0.015 | 1.01 | 0.0 | 0.06 | 8.10 | 0.01 | 1.935 | 12.60 | 0.00 | 8.2 | 91.6 | 0.2 | -5.08 | 0.79 | 0.80 | 3.01 | 2.5 | 0.004 | 0.68 | 0.0 | 0.04 | 15.21 | 0.00 | 2.159 | 9.66 | 0.28 | 2.8 | 97.2 | 0.0 | 0.47 | 1.81 | 0.80 | 0.85 | 2.00 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD2 | 6635 | 2023-02-24 | 2016-03-28 | 3.3 | 2.95 | — | 2.9 | 0.011 | 1.04 | 0.0 | 0.06 | 8.84 | 0.01 | 2.219 | 10.21 | 0.72 | 5.6 | 93.6 | 0.8 | -5.54 | 0.80 | 0.83 | 3.54 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.29 | 0.00 | 2.187 | 9.17 | 0.44 | 4.1 | 95.9 | 0.0 | 0.18 | 1.19 | 0.81 | 0.87 | 2.36 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2023-02-24 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.17 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.34 | 0.00 | 2.140 | 12.61 | 0.28 | 4.0 | 96.0 | 0.0 | -0.42 | 1.00 | 0.81 | 0.83 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2023-02-24 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.60 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.60 | 0.00 | 2.026 | 11.75 | 0.32 | 3.9 | 96.1 | 0.0 | 0.50 | 0.72 | 0.80 | 0.87 | 2.40 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-02-19 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.54 | 5.0 | 0.13 | 16.74 | 0.02 | 1.335 | 78.07 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.87 | 0.0 | 0.05 | 12.42 | 0.00 | 2.050 | 18.43 | 0.00 | 8.4 | 90.7 | 0.9 | -0.63 | 1.77 | 0.57 | 0.72 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2023-02-17 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.24 | 0.0 | 0.05 | 17.17 | 0.01 | 2.010 | 31.44 | 0.49 | 9.2 | 89.6 | 1.2 | -2.49 | 2.03 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-02-24 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-02-24 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2023-02-25 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.004 | 0.85 | 0.0 | 0.04 | 17.10 | 0.00 | 2.084 | 16.34 | 0.45 | 5.7 | 93.9 | 0.4 | 0.75 | 3.18 | 0.89 | 0.84 | 1.24 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2023-02-20 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.04 | 12.22 | 0.00 | 2.111 | 17.83 | 0.00 | 10.2 | 88.5 | 1.3 | -1.76 | 1.66 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-02-26 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 4V19 | 2787 | 2023-02-27 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.32 | 0.0 | 0.05 | 20.28 | 0.05 | 1.860 | 9.75 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.003 | 1.00 | 0.0 | 0.04 | 19.43 | 0.01 | 1.122 | 8.45 | 0.58 | 3.5 | 96.5 | 0.1 | 0.02 | 1.52 | 0.76 | 0.87 | 2.12 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2023-02-28 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.17 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 16.87 | 0.00 | 2.083 | 10.93 | 0.29 | 4.4 | 95.5 | 0.1 | 0.59 | 1.92 | 0.38 | 0.79 | 1.76 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2023-02-19 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.68 | 8.0 | 0.11 | 19.25 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.004 | 0.75 | 0.0 | 0.05 | 17.83 | 0.00 | 2.195 | 13.49 | 0.48 | 5.9 | 93.7 | 0.3 | -0.03 | 3.23 | 0.62 | 0.82 | 2.08 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2023-02-20 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.004 | 0.60 | 0.0 | 0.03 | 10.41 | 0.00 | 2.080 | 11.78 | 0.00 | 5.3 | 94.7 | 0.0 | -0.72 | 1.45 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2023-02-19 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.9 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.048 | 8.96 | 0.00 | 4.7 | 95.3 | 0.0 | -0.78 | 0.97 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✔ | 5A8L | 3099 | 2023-02-20 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 8.91 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.005 | 0.82 | 0.0 | 0.04 | 17.26 | 0.01 | 2.034 | 19.30 | 1.33 | 10.7 | 88.1 | 1.1 | -2.35 | 1.54 | 0.23 | 0.63 | 0.72 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2023-02-23 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.91 | 3.0 | 0.11 | 10.21 | 0.02 | 1.986 | 10.66 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.004 | 0.71 | 0.0 | 0.05 | 11.25 | 0.00 | 2.046 | 11.61 | 0.05 | 7.0 | 92.5 | 0.5 | -0.83 | 1.60 | 0.82 | 0.83 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2023-02-20 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 21.88 | 0.01 | 2.197 | 7.01 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.74 | 0.00 | 2.150 | 14.50 | 0.00 | 9.5 | 90.2 | 0.3 | -1.36 | 2.82 | 0.63 | 0.76 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |