Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAT	6352	2022-07-07	2015-06-20	3.5	3.68	—	3.7	0.009	1.54	12.0	0.09	16.21	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.004	0.63	0.0	0.04	17.24	0.00	1.850	8.29	0.25	2.5	97.5	0.0	0.90	0.77	0.63	0.85	2.28	40500	5124	24	0	24	0	0	logfile
✘	3JAU	6366	2022-07-04	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.51	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	114900	14700	180	0	0	0	0	logfile
✔	3JB6	6408	2022-07-04	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.06	0.00	2.157	5.94	0.20	1.8	98.2	0.0	0.16	1.19	0.63	0.88	3.71	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2022-07-04	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.69	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.68	0.0	0.04	15.37	0.00	2.188	10.87	0.66	2.6	97.3	0.1	0.19	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	3JB9	6413	2022-07-05	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.11	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	3.6	0.007	0.90	2.0	0.04	17.16	0.01	1.525	16.23	0.17	6.3	93.0	0.8	-1.24	0.93	0.56	0.64	1.07	86551	9194	50	328	1328	0	0	logfile
✔	3JBR	6475	2022-07-04	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.29	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.76	0.0	0.04	11.15	0.00	2.086	14.97	0.09	11.5	86.4	2.1	-0.82	1.54	0.66	0.70	—	16467	2148	6	0	385	0	0	logfile
✔	3JBS	6478	2022-07-02	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2022-07-04	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.93	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.92	0.00	1.871	15.41	0.42	7.1	92.1	0.8	-1.31	1.73	0.69	0.66	0.68	70252	8736	28	0	21	0	0	logfile
✔	3JBU	6483	2022-07-07	2015-10-16	3.64	3.71	—	3.6	0.008	1.32	5.0	0.10	19.19	0.01	0.232	33.74	2.84	8.0	89.1	2.9	-2.66	0.70	0.74	0.87	3.6	0.008	0.92	4.0	0.04	17.98	0.01	1.665	17.16	0.33	9.8	89.6	0.5	-2.41	2.05	0.72	0.78	0.99	143334	5599	54	4638	0	0	0	logfile
✔	3JBV	6486	2022-07-08	2015-10-16	3.32	3.40	—	3.3	0.007	1.32	4.0	0.10	19.58	0.01	0.389	31.42	3.04	8.1	88.9	3.0	-2.71	0.67	0.78	1.48	3.3	0.006	0.82	1.0	0.04	18.06	0.01	1.721	16.11	0.30	9.6	89.8	0.7	-2.08	1.55	0.69	0.80	1.50	145911	5734	57	4712	1	0	0	logfile
✔	3JBW	6489	2022-07-07	2015-10-21	4.6	4.71	—	4.6	0.013	1.70	1.0	0.08	21.70	0.01	1.977	22.80	4.88	5.6	93.6	0.9	-3.37	0.75	0.79	—	4.6	0.004	0.80	0.0	0.04	21.59	0.01	2.115	22.64	0.06	5.4	94.4	0.2	-0.90	1.70	0.76	0.80	—	19997	1946	12	222	2	0	0	logfile
✔	3JBX	6487	2022-07-06	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.87	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	3.5	0.004	0.77	0.0	0.04	21.52	0.01	2.088	16.62	0.76	4.3	95.5	0.1	-0.65	0.79	0.75	0.82	1.82	16670	1802	14	116	6	0	0	logfile
✔	3JBY	6488	2022-07-06	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.87	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.005	0.78	0.0	0.04	21.25	0.01	2.173	14.91	0.51	4.6	95.1	0.3	-0.23	0.86	0.75	0.82	1.50	16846	1802	12	124	6	0	0	logfile
✔	3JC1	6461	2022-07-06	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.009	0.98	2.0	0.04	15.96	0.00	1.718	14.77	0.23	1.9	98.1	0.0	3.07	1.23	0.43	0.75	—	92106	11628	68	0	0	0	0	logfile
✔	3JC2	3245	2022-07-03	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.017	1.85	1.0	0.04	17.47	0.01	2.061	19.15	0.00	7.9	91.3	0.9	-1.89	2.29	0.24	0.53	1.41	3911	482	4	0	32	0	0	logfile
✔	3JC5	6535	2022-07-07	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	4.8	0.004	1.01	0.0	0.05	13.22	0.00	1.966	23.19	0.02	9.3	89.9	0.9	-1.49	1.56	0.83	0.78	—	40041	5039	11	0	0	0	0	logfile
✔	3JC6	6534	2022-07-05	2015-11-24	3.7	4.01	—	3.9	0.009	1.53	0.0	0.06	12.91	0.01	1.203	39.77	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	3.9	0.004	1.16	0.0	0.05	16.98	0.01	2.018	20.74	0.79	9.7	89.5	0.8	-1.58	1.58	0.82	0.77	1.09	23732	2953	12	0	1	0	0	logfile
✘	3JC7	6536	2022-07-07	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.96	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✘	3JCA	6441	2022-07-03	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	3.54	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11466	1226	16	80	4	0	0	logfile
✔	3JCD	6549	2022-07-08	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.009	1.30	3.0	0.06	19.34	0.01	1.552	58.33	0.29	15.3	83.3	1.3	-4.06	2.01	0.67	0.38	0.30	147815	5982	57	4715	0	0	0	logfile

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