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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JC5 | 6535 | 2022-12-20 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.35 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2022-12-18 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.53 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.77 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2022-12-20 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.96 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2022-12-12 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.62 | 0.01 | 2.370 | 3.54 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.68 | 0.0 | 0.04 | 19.69 | 0.01 | 2.009 | 16.11 | 0.19 | 5.4 | 94.6 | 0.0 | -0.35 | 2.48 | 0.76 | 0.77 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2022-12-13 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.69 | 0.00 | 1.975 | 12.25 | 0.13 | 3.6 | 96.4 | 0.0 | 1.83 | 0.69 | 0.74 | 0.85 | 1.74 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 3JCi | 6555 | 2022-12-17 | 2015-12-13 | 2.9 | 3.14 | — | 3.1 | 0.010 | 0.89 | 0.0 | 0.05 | 8.65 | 0.01 | 0.060 | 32.23 | 0.00 | 2.1 | 97.3 | 0.5 | -2.08 | 0.74 | 0.84 | 5.65 | 3.1 | 0.013 | 0.91 | 17.0 | 0.05 | 16.16 | 0.01 | 1.687 | 17.43 | 2.47 | 3.8 | 96.1 | 0.1 | -1.14 | 0.85 | 0.67 | 0.85 | 4.75 | 94977 | 11590 | 61 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCL | 6526 | 2022-12-15 | 2015-12-21 | 4.0 | 4.03 | — | 4.0 | 0.018 | 1.83 | 9.0 | 0.09 | 9.75 | 0.01 | 2.379 | 2.99 | 0.00 | 5.2 | 94.3 | 0.6 | -0.72 | 0.71 | 0.74 | — | 4.0 | 0.004 | 0.75 | 0.0 | 0.04 | 14.71 | 0.00 | 2.130 | 13.44 | 0.40 | 7.4 | 92.5 | 0.1 | -0.55 | 1.78 | 0.69 | 0.69 | — | 24822 | 3201 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCo | 6574 | 2022-12-19 | 2016-01-06 | 4.8 | 5.76 | — | 4.7 | 0.012 | 1.35 | 4.0 | 0.06 | 10.71 | 0.01 | 1.268 | 95.93 | 0.41 | 13.5 | 85.0 | 1.5 | -5.20 | 0.87 | 0.76 | — | 4.7 | 0.005 | 0.89 | 0.0 | 0.05 | 12.37 | 0.01 | 1.973 | 40.19 | 0.01 | 8.9 | 90.7 | 0.4 | -1.74 | 3.09 | 0.90 | 0.84 | — | 104317 | 13329 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCP | 6575 | 2022-12-19 | 2016-01-06 | 4.6 | 4.81 | — | 4.5 | 0.011 | 1.30 | 3.0 | 0.06 | 10.56 | 0.01 | 1.114 | 72.27 | 0.76 | 11.7 | 86.7 | 1.7 | -5.00 | 0.76 | 0.66 | — | 4.5 | 0.005 | 0.87 | 0.0 | 0.05 | 12.40 | 0.01 | 1.907 | 33.00 | 0.01 | 8.6 | 91.1 | 0.3 | -1.22 | 0.96 | 0.86 | 0.81 | — | 104170 | 13367 | 47 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2022-12-19 | 2016-03-10 | 3.2 | 3.37 | — | 3.2 | 0.012 | 1.45 | 0.0 | 0.07 | 13.92 | 0.01 | 1.210 | 23.56 | 0.03 | 5.0 | 94.1 | 1.0 | -1.00 | 0.79 | 0.84 | 3.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✔ | 3JCZ | 6630 | 2022-12-15 | 2016-03-27 | 3.26 | 3.11 | — | 3.3 | 0.008 | 0.69 | 0.0 | 0.05 | 7.32 | 0.01 | 2.244 | 9.10 | 0.00 | 7.0 | 93.0 | 0.0 | -4.42 | 0.77 | 0.85 | 4.34 | 3.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.81 | 0.00 | 2.037 | 10.72 | 0.08 | 5.2 | 94.8 | 0.0 | -0.54 | 2.05 | 0.78 | 0.88 | 2.25 | 23286 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2022-12-15 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.63 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 14.32 | 0.00 | 2.131 | 13.81 | 0.12 | 4.7 | 95.2 | 0.1 | 0.79 | 2.53 | 0.85 | 0.86 | 2.00 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JD1 | 6634 | 2022-12-15 | 2016-03-28 | 3.3 | 2.71 | — | 3.0 | 0.015 | 1.01 | 0.0 | 0.06 | 8.10 | 0.01 | 1.935 | 12.85 | 0.00 | 8.2 | 91.6 | 0.2 | -5.08 | 0.79 | 0.80 | 3.01 | 2.5 | 0.004 | 0.68 | 0.0 | 0.04 | 15.13 | 0.00 | 2.159 | 9.53 | 0.24 | 3.0 | 97.0 | 0.0 | 0.50 | 1.81 | 0.80 | 0.85 | 2.03 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD2 | 6635 | 2022-12-15 | 2016-03-28 | 3.3 | 2.95 | — | 2.9 | 0.011 | 1.04 | 0.0 | 0.06 | 8.84 | 0.01 | 2.219 | 10.21 | 0.72 | 5.6 | 93.6 | 0.8 | -5.54 | 0.80 | 0.83 | 3.54 | 2.9 | 0.003 | 0.58 | 0.0 | 0.04 | 14.11 | 0.00 | 2.213 | 8.68 | 0.48 | 3.7 | 96.3 | 0.0 | 0.38 | 0.98 | 0.81 | 0.87 | 2.34 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2022-12-15 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.30 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.004 | 0.70 | 0.0 | 0.04 | 15.37 | 0.00 | 2.156 | 14.78 | 0.24 | 4.7 | 95.3 | 0.0 | -0.91 | 0.99 | 0.81 | 0.84 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2022-12-15 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.85 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.69 | 0.00 | 2.029 | 11.52 | 0.48 | 3.9 | 96.1 | 0.0 | 0.66 | 0.73 | 0.80 | 0.87 | 2.26 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 3JD6 | 6425 | 2022-12-21 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 34.0 | 0.12 | 14.71 | 0.02 | 0.000 | 5.64 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.59 | 0.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45781 | 2839 | 17 | 0 | 0 | 0 | 22542 | logfile |
✔ | 3JD8 | 6640 | 2022-12-12 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.54 | 5.0 | 0.13 | 16.74 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.004 | 0.89 | 0.0 | 0.05 | 12.15 | 0.00 | 2.013 | 20.78 | 0.00 | 9.0 | 90.2 | 0.8 | -1.05 | 1.79 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2022-12-11 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 180.45 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.0 | 0.004 | 1.18 | 0.0 | 0.05 | 17.18 | 0.01 | 2.023 | 26.84 | 0.49 | 9.4 | 89.6 | 1.0 | -2.22 | 1.72 | 0.31 | 0.41 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-12-12 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.15 | 0.0 | 0.05 | 15.79 | 0.01 | 2.143 | 26.45 | 0.01 | 19.2 | 76.6 | 4.1 | -4.17 | 1.41 | 0.61 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |