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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JB6 | 6408 | 2024-03-16 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.29 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.003 | 0.58 | 0.0 | 0.04 | 15.04 | 0.00 | 2.144 | 6.05 | 1.93 | 1.7 | 98.3 | 0.0 | -0.02 | 1.18 | 0.62 | 0.89 | 3.86 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2024-03-16 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 11.60 | 0.00 | 0.793 | 10.58 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 15.92 | 0.00 | 2.115 | 10.90 | 2.65 | 2.5 | 97.4 | 0.1 | 0.31 | 0.82 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2024-03-18 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 18.14 | 0.01 | 1.253 | 18.05 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 3JBR | 6475 | 2024-03-17 | 2015-09-29 | 4.2 | 4.39 | — | 4.2 | 0.009 | 1.31 | 0.0 | 0.06 | 11.09 | 0.00 | 1.419 | 19.19 | 0.37 | 8.1 | 84.8 | 7.0 | -3.43 | 0.66 | 0.70 | — | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 10.62 | 0.00 | 2.119 | 14.52 | 0.00 | 11.4 | 86.4 | 2.2 | -0.66 | 1.53 | 0.66 | 0.71 | — | 16467 | 2148 | 6 | 0 | 385 | 0 | 0 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JBT | 6480 | 2024-03-15 | 2015-10-15 | 3.8 | 3.89 | — | 3.8 | 0.008 | 1.31 | 7.0 | 0.07 | 19.73 | 0.01 | 1.919 | 70.66 | 18.24 | 8.0 | 88.3 | 3.6 | -0.65 | 0.57 | 0.50 | 0.49 | 3.8 | 0.004 | 0.81 | 0.0 | 0.04 | 17.10 | 0.00 | 1.759 | 17.33 | 3.43 | 8.0 | 91.3 | 0.7 | -1.47 | 1.75 | 0.70 | 0.69 | 0.69 | 70252 | 8736 | 28 | 0 | 21 | 0 | 0 | logfile |
✔ | 3JBU | 6483 | 2024-03-20 | 2015-10-16 | 3.64 | 3.71 | — | 3.6 | 0.008 | 1.32 | 5.0 | 0.10 | 25.15 | 0.01 | 0.232 | 33.71 | 2.84 | 8.0 | 89.1 | 2.9 | -2.66 | 0.70 | 0.74 | 0.87 | 3.6 | 0.004 | 0.75 | 0.0 | 0.04 | 24.18 | 0.01 | 1.980 | 14.04 | 6.19 | 9.1 | 90.4 | 0.5 | -2.32 | 1.60 | 0.72 | 0.78 | 0.96 | 143334 | 5599 | 54 | 4638 | 0 | 0 | 0 | logfile |
✔ | 3JBV | 6486 | 2024-03-22 | 2015-10-16 | 3.32 | 3.40 | — | 3.3 | 0.007 | 1.32 | 4.0 | 0.10 | 25.42 | 0.01 | 0.389 | 31.39 | 3.04 | 8.1 | 88.9 | 3.0 | -2.71 | 0.67 | 0.78 | 1.48 | 3.3 | 0.004 | 0.71 | 0.0 | 0.04 | 24.19 | 0.01 | 1.980 | 12.86 | 5.99 | 8.9 | 90.5 | 0.6 | -1.87 | 1.56 | 0.69 | 0.80 | 1.40 | 145911 | 5734 | 57 | 4712 | 1 | 0 | 0 | logfile |
✘ | 3JBW | 6489 | 2024-03-24 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.90 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2024-03-22 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.20 | 0.01 | 1.816 | 16.75 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 21.23 | 0.00 | 2.086 | 16.68 | 3.47 | 4.5 | 95.4 | 0.1 | -0.43 | 0.78 | 0.74 | 0.82 | 1.84 | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2024-03-22 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.89 | 0.01 | 2.015 | 24.71 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 21.40 | 0.00 | 2.109 | 15.87 | 2.53 | 4.3 | 95.4 | 0.3 | -0.27 | 0.85 | 0.75 | 0.83 | 1.45 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |
✔ | 3JC1 | 6461 | 2024-03-19 | 2015-11-09 | 4.0 | 4.30 | — | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 10.37 | 0.00 | 2.291 | 8.81 | 0.00 | 3.8 | 96.2 | 0.0 | -3.91 | 0.31 | 0.59 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.04 | 16.21 | 0.00 | 2.171 | 10.22 | 2.89 | 1.8 | 98.2 | 0.0 | 3.43 | 1.22 | 0.44 | 0.76 | — | 92106 | 11628 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2024-03-10 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.83 | 0.0 | 0.04 | 17.12 | 0.00 | 2.209 | 14.20 | 3.66 | 6.6 | 92.8 | 0.6 | -1.30 | 2.30 | 0.23 | 0.52 | 1.41 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2024-03-24 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2024-03-19 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2024-03-15 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.84 | 0.01 | 2.370 | 2.63 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 19.35 | 0.00 | 2.135 | 14.52 | 0.19 | 4.6 | 95.4 | 0.0 | 0.14 | 2.45 | 0.76 | 0.76 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 3JCE | 6550 | 2024-03-02 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 22.68 | 0.00 | 1.106 | 32.64 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.1 | 0.006 | 1.17 | 5.0 | 0.05 | 25.14 | 0.01 | 1.590 | 49.53 | 2.65 | 13.3 | 85.5 | 1.2 | -3.72 | 1.89 | 0.70 | 0.41 | 0.15 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2024-03-16 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.68 | 0.00 | 1.959 | 12.92 | 2.23 | 3.6 | 96.4 | 0.0 | 1.69 | 1.46 | 0.75 | 0.85 | 1.85 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |