Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5AJ3	2913	2023-04-23	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.06	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✘	5BK4	9400	2023-04-22	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.44	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62482	7636	22	120	8	0	0	logfile
✔	5BKF	9403	2023-04-22	2021-03-19	3.6	3.87	—	4.0	0.004	0.54	0.0	0.04	13.37	0.00	2.015	7.17	0.35	6.2	93.8	0.0	-3.64	0.66	0.81	2.57	3.9	0.003	0.71	0.0	0.04	16.00	0.00	2.234	11.94	0.42	3.6	96.4	0.0	-0.31	1.34	0.66	0.83	2.29	13470	1694	10	0	9	0	0	logfile
✔	5BKG	9404	2023-04-22	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.34	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.05	15.62	0.00	2.210	11.60	0.27	4.4	95.6	0.0	-0.58	0.64	0.70	0.84	2.09	13509	1689	10	0	9	0	0	logfile
✔	5BKi	9405	2023-04-24	2021-03-19	3.1	3.21	—	3.2	0.010	1.04	0.0	0.06	15.27	0.01	2.252	4.46	0.44	5.4	94.6	0.0	-5.10	0.70	0.85	3.65	3.2	0.002	0.53	0.0	0.05	16.01	0.00	2.138	5.90	0.05	3.6	96.4	0.0	0.05	1.61	0.65	0.85	2.70	16933	2156	20	0	21	4	0	logfile
✔	5BKJ	9406	2023-04-24	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	5.00	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	5BKK	9407	2023-04-24	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.72	0.00	2.242	5.39	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.56	0.0	0.05	16.37	0.00	2.142	8.32	0.33	2.9	97.1	0.0	-0.82	1.21	0.65	0.82	2.02	16831	2156	11	0	6	0	0	logfile
✔	5FN2	3237	2023-04-21	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.005	0.92	0.0	0.05	14.42	0.01	2.145	22.58	0.00	9.5	89.6	0.8	-1.02	1.11	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	5FN3	3238	2023-04-21	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.83	0.0	0.04	13.92	0.01	2.063	18.67	0.00	8.4	90.6	1.0	-0.49	2.22	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN4	3239	2023-04-21	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.48	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN5	3240	2023-04-21	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.86	0.0	0.04	13.72	0.01	2.178	20.91	0.10	8.6	90.7	0.7	-0.88	1.04	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FUU	3308	2023-04-25	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	11.14	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.004	0.85	0.0	0.05	13.02	0.00	2.160	14.08	0.05	6.9	92.6	0.6	-1.30	0.96	0.77	0.83	—	20735	2281	70	0	213	0	0	logfile
✔	5FWK	3337	2023-04-27	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.17	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.62	0.0	0.04	14.82	0.00	1.821	11.16	0.28	5.7	94.3	0.0	-0.14	1.24	0.77	0.77	1.68	26221	1612	6	0	4	0	13109	logfile
✔	5G04	3385	2023-04-23	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.008	0.89	0.0	0.04	18.07	0.00	2.003	19.55	0.83	5.9	93.5	0.6	0.04	1.74	0.84	0.77	0.67	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2023-04-22	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.003	0.84	0.0	0.04	17.34	0.00	2.093	16.82	0.41	4.9	94.6	0.5	0.75	3.20	0.89	0.84	1.25	63181	8027	21	0	3	0	0	logfile
✔	5G06	3366	2023-04-27	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.05	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	4.7	0.003	0.75	0.0	0.04	14.36	0.00	2.082	17.81	0.00	4.2	95.6	0.1	-0.48	1.80	0.88	0.79	—	26794	3420	11	0	0	0	0	logfile
✔	5G2X	3331	2023-04-24	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	5G2Y	3332	2023-04-22	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5GAK	3227	2023-04-26	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	5GAM	8011	2023-04-25	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.79	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.87	0.0	0.05	18.86	0.00	2.066	18.19	0.55	6.9	93.0	0.2	-1.07	1.70	0.80	0.79	1.15	19123	2002	13	166	19	0	0	logfile

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