Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAG	3038	2021-11-19	2015-06-10	3.65	3.73	—	3.7	0.008	1.35	24.0	0.10	20.18	0.01	0.799	7.60	12.37	9.6	87.0	3.3	-3.61	0.79	0.87	1.91	3.7	0.005	0.75	3.0	0.04	18.47	0.01	1.313	16.47	0.33	7.4	91.7	0.9	-1.06	1.64	0.77	0.84	1.50	226469	12666	106	5820	207	0	0	logfile
✔	3JAH	3039	2021-11-19	2015-06-10	3.45	3.60	—	3.5	0.009	1.36	27.0	0.10	20.43	0.01	1.389	8.26	13.13	10.7	85.8	3.5	-4.27	0.80	0.87	2.12	3.5	0.004	0.75	0.0	0.04	18.48	0.01	1.916	15.70	0.84	8.3	90.8	0.8	-1.32	0.89	0.81	0.86	1.59	226454	12664	107	5820	207	0	0	logfile
✔	3JAJ	3037	2021-11-19	2015-06-16	3.75	3.82	3.77	3.8	0.013	1.90	339.0	0.13	23.43	0.02	0.312	55.51	20.83	14.7	79.8	5.5	-5.44	0.74	0.80	0.72	3.8	0.006	0.85	0.0	0.04	19.04	0.01	1.882	18.23	1.09	10.5	88.6	1.0	-1.98	1.70	0.77	0.83	1.14	228197	12521	100	5958	193	0	0	logfile
✔	3JAK	6349	2021-11-05	2015-06-16	3.3	3.49	—	3.6	0.009	1.40	0.0	0.08	15.62	0.01	2.010	2.26	1.12	2.2	97.7	0.1	0.27	0.64	0.85	2.90	3.5	0.004	0.69	0.0	0.04	16.53	0.00	2.042	6.83	0.19	1.9	98.1	0.0	1.10	0.75	0.61	0.87	2.66	43066	5428	26	0	18	0	0	logfile
✔	3JAL	6350	2021-11-05	2015-06-16	3.5	3.70	—	3.6	0.010	1.46	5.0	0.08	15.74	0.01	1.948	1.62	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.003	0.63	0.0	0.04	16.92	0.00	2.019	7.22	0.30	2.2	97.8	0.0	1.07	0.82	0.66	0.86	2.44	43012	5428	26	0	18	0	0	logfile
✔	3JAM	3047	2021-11-04	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.004	0.72	0.0	0.04	19.16	0.01	1.908	13.09	0.68	9.5	89.4	1.1	-0.86	1.57	0.67	0.85	1.60	77850	5056	42	1780	83	0	0	logfile
✘	3JAP	3048	2021-11-05	2015-06-18	4.9	5.03	5.09	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.250	9.46	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98333	7272	53	1869	255	0	0	logfile
✔	3JAR	6351	2021-11-05	2015-06-19	3.4	3.64	—	3.6	0.008	1.38	6.0	0.08	16.19	0.01	1.923	1.68	1.82	2.6	97.2	0.2	0.27	0.69	0.87	3.14	3.6	0.003	0.59	0.0	0.04	16.61	0.00	2.008	5.82	0.24	2.0	98.0	0.0	0.99	1.53	0.66	0.88	2.63	43024	5428	26	6	12	0	0	logfile
✔	3JAS	6353	2021-11-05	2015-06-19	3.5	3.68	—	3.7	0.008	1.46	6.0	0.08	16.41	0.01	1.846	3.37	2.07	3.1	96.8	0.1	0.41	0.64	0.85	2.90	3.6	0.004	0.65	0.0	0.04	16.93	0.00	1.961	8.28	0.35	3.2	96.8	0.0	1.01	0.80	0.60	0.84	2.41	40506	5124	24	6	12	0	0	logfile
✔	3JAT	6352	2021-11-05	2015-06-20	3.5	3.68	—	3.7	0.010	1.55	12.0	0.09	16.24	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.003	0.64	0.0	0.04	17.20	0.00	1.964	7.95	0.23	2.6	97.4	0.0	0.87	1.54	0.63	0.85	2.20	40500	5124	24	0	24	0	0	logfile
✔	3JAU	6366	2021-11-02	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.24	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.005	0.79	0.0	0.05	13.66	0.00	2.062	27.61	0.00	4.6	95.0	0.4	-0.49	1.54	0.24	0.61	—	114900	14700	180	0	0	0	0	logfile
✔	3JB6	6408	2021-11-02	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.25	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.12	0.00	2.098	5.54	0.20	2.0	98.0	0.0	0.10	1.20	0.64	0.89	3.62	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2021-11-02	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.004	0.73	0.0	0.04	15.47	0.00	2.125	13.04	0.60	3.0	96.9	0.1	0.10	0.90	0.79	0.85	—	14176	1733	8	11	3	0	0	logfile
✘	3JB8	6382	2021-11-22	2015-08-04	3.6	3.59	—	96.0	0.011	1.51	0.0	0.07	11.99	0.01	0.235	176.39	4.85	9.9	87.9	2.2	-2.92	0.00	0.00	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	245880	33000	180	0	0	0	0	logfile
✔	3JB9	6413	2021-11-05	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.04	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	3.6	0.007	0.86	1.0	0.04	16.93	0.01	1.620	14.21	0.17	6.4	92.8	0.7	-0.88	0.97	0.56	0.65	1.10	86551	9194	50	328	1328	0	0	logfile
✔	3JBR	6475	2021-11-02	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.15	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.004	0.80	0.0	0.04	11.12	0.00	2.054	17.30	0.00	12.8	85.2	1.9	-0.89	1.59	0.66	0.72	—	16467	2148	6	0	385	0	0	logfile
✔	3JBS	6478	2021-11-01	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.1	0.003	0.63	0.0	0.04	18.16	0.00	2.254	7.58	3.29	2.3	97.7	0.0	1.44	1.34	0.21	0.80	3.51	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2021-11-03	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.45	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.81	0.0	0.04	16.88	0.00	1.837	16.22	0.49	7.5	91.8	0.8	-1.32	1.82	0.70	0.67	0.80	70252	8736	28	0	21	0	0	logfile
✔	3JBU	6483	2021-11-06	2015-10-16	3.64	3.71	—	3.6	0.008	1.32	5.0	0.10	19.19	0.01	0.232	33.71	2.84	8.0	89.1	2.9	-2.66	0.70	0.74	0.87	3.6	0.008	0.92	2.0	0.04	18.19	0.01	1.659	17.35	0.46	9.6	89.8	0.6	-2.31	1.61	0.72	0.78	0.96	143334	5599	54	4638	0	0	0	logfile
✔	3JBV	6486	2021-11-06	2015-10-16	3.32	3.40	—	3.3	0.007	1.32	4.0	0.10	19.58	0.01	0.389	31.38	3.04	8.1	88.9	3.0	-2.71	0.67	0.78	1.48	3.3	0.006	0.79	1.0	0.04	17.86	0.01	1.658	14.61	0.17	8.6	90.7	0.6	-1.88	1.58	0.68	0.80	1.46	145911	5734	57	4712	1	0	0	logfile

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